Wall clock time and date at job start Mon Mar 30 2020 01:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34939 * 126.03802 * 2 1 4 4 C 1.35314 * 107.74885 * 180.02562 * 3 2 1 5 5 C 1.50694 * 126.04478 * 179.73964 * 4 3 2 6 6 O 1.42903 * 109.47402 * 89.99827 * 5 4 3 7 7 C 1.42898 * 114.00221 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47156 * 30.00032 * 7 6 5 9 9 C 1.50701 * 109.47235 * 270.00021 * 7 6 5 10 10 H 1.07994 * 120.00286 * 119.99720 * 9 7 6 11 11 C 1.37880 * 119.99659 * 300.00054 * 9 7 6 12 12 N 1.31521 * 120.00063 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00066 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46858 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47193 * 119.99877 * 13 11 9 16 16 H 1.48499 * 109.47453 * 239.99955 * 13 11 9 17 17 C 1.52997 * 109.47301 * 149.99608 * 7 6 5 18 18 N 1.46898 * 109.47194 * 293.29549 * 17 7 6 19 19 C 1.46903 * 109.47339 * 64.49884 * 18 17 7 20 20 C 1.46905 * 109.47115 * 184.49709 * 18 17 7 21 21 C 1.46898 * 109.47136 * 304.49472 * 18 17 7 22 22 C 1.39874 * 107.91557 * 359.97438 * 4 3 2 23 23 N 1.30840 * 108.20494 * 0.02562 * 22 4 3 24 24 H 1.08998 * 109.47445 * 89.99838 * 1 2 3 25 25 H 1.09004 * 109.47387 * 210.00149 * 1 2 3 26 26 H 1.09001 * 109.46749 * 330.00011 * 1 2 3 27 27 H 1.08008 * 126.13162 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.47326 * 209.99875 * 5 4 3 29 29 H 1.08998 * 109.47428 * 329.99700 * 5 4 3 30 30 H 0.96997 * 119.99875 * 180.02562 * 12 11 9 31 31 H 1.09007 * 109.46768 * 53.29628 * 17 7 6 32 32 H 1.09001 * 109.47280 * 173.29201 * 17 7 6 33 33 H 1.08996 * 109.46878 * 50.74420 * 19 18 17 34 34 H 1.08996 * 109.47092 * 170.74416 * 19 18 17 35 35 H 1.09001 * 109.46794 * 290.74378 * 19 18 17 36 36 H 1.09000 * 109.46777 * 60.00239 * 20 18 17 37 37 H 1.09000 * 109.46991 * 179.97438 * 20 18 17 38 38 H 1.08993 * 109.47201 * 300.00322 * 20 18 17 39 39 H 1.09007 * 109.46912 * 60.00152 * 21 18 17 40 40 H 1.09000 * 109.47276 * 179.97438 * 21 18 17 41 41 H 1.09000 * 109.47676 * 300.00325 * 21 18 17 42 42 H 1.08003 * 125.89765 * 180.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5451 -0.0063 6 8 5.1574 1.8284 1.3391 7 6 6.3146 2.6599 1.4465 8 1 6.3645 3.3262 0.5852 9 6 7.5503 1.7983 1.4873 10 1 8.3096 1.9067 0.7270 11 6 7.7114 0.8714 2.4952 12 7 6.7869 0.7396 3.4214 13 14 9.2427 -0.1972 2.5455 14 1 10.1220 0.1437 1.3983 15 1 9.9719 0.0421 3.8168 16 1 8.8515 -1.6272 2.4609 17 6 6.2290 3.4899 2.7289 18 7 5.1173 4.4441 2.6214 19 6 3.8480 3.7095 2.5362 20 6 5.1015 5.3131 3.8057 21 6 5.2906 5.2639 1.4148 22 6 3.5346 -0.7322 -0.0003 23 7 2.2890 -1.1328 -0.0002 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.9282 2.1194 -0.0004 28 1 5.5812 1.0319 -0.5195 29 1 4.5434 2.4779 -0.5236 30 1 6.9005 0.0878 4.1307 31 1 6.0596 2.8288 3.5789 32 1 7.1624 4.0342 2.8724 33 1 3.7947 2.9812 3.3453 34 1 3.0167 4.4093 2.6219 35 1 3.7908 3.1930 1.5780 36 1 6.0433 5.8582 3.8689 37 1 4.2769 6.0214 3.7257 38 1 4.9730 4.7048 4.7010 39 1 5.3023 4.6191 0.5360 40 1 4.4654 5.9716 1.3348 41 1 6.2324 5.8090 1.4780 42 1 4.4053 -1.3711 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222429999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:03 Heat of formation + Delta-G solvation = 137.392703 kcal Electronic energy + Delta-G solvation = -22041.390468 eV Core-core repulsion = 18949.281595 eV Total energy + Delta-G solvation = -3092.108873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.177 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.55816 -42.02315 -38.26172 -35.04042 -34.09047 -32.14271 -30.86834 -29.44600 -29.33643 -28.24388 -27.70013 -25.60851 -24.46578 -22.36517 -21.98163 -21.17583 -18.89174 -18.09419 -17.87636 -17.59519 -17.30190 -16.75916 -16.44694 -16.08555 -15.66176 -15.32936 -14.90781 -14.46943 -14.00971 -13.88682 -13.63170 -13.52200 -13.43308 -13.19454 -13.15755 -13.09207 -13.05938 -12.94958 -12.77636 -12.65786 -12.62306 -12.35619 -11.91931 -11.41932 -11.09223 -10.75586 -10.33921 -9.83651 -9.34896 -8.27549 -6.41523 1.00468 1.13836 1.32836 1.46174 1.51278 1.73133 1.80046 2.34110 2.96364 3.09895 3.19806 3.25267 3.56249 3.77823 4.02797 4.09659 4.24138 4.33210 4.36322 4.39615 4.44819 4.46721 4.47187 4.56390 4.58120 4.67058 4.73067 4.74865 4.82506 4.85352 4.90311 4.93633 5.00167 5.15983 5.31842 5.45212 5.66935 5.68051 6.01493 6.23862 6.49904 6.76751 6.99468 7.40508 8.70876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.381 5.381 3 C 0.084 3.916 4 C -0.247 4.247 5 C 0.147 3.853 6 O -0.376 6.376 7 C 0.195 3.805 8 H 0.061 0.939 9 C -0.566 4.566 10 H 0.051 0.949 11 C 0.072 3.928 12 N -0.866 5.866 13 Si 0.908 3.092 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.302 1.302 17 C 0.017 3.983 18 N -0.257 5.257 19 C -0.037 4.037 20 C -0.042 4.042 21 C -0.052 4.052 22 C 0.043 3.957 23 N -0.348 5.348 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.124 0.876 27 H 0.224 0.776 28 H 0.025 0.975 29 H 0.077 0.923 30 H 0.261 0.739 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.138 0.862 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.142 0.858 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.145 0.855 41 H 0.123 0.877 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.846 20.734 -0.263 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.163 5.163 3 C -0.063 4.063 4 C -0.259 4.259 5 C 0.069 3.931 6 O -0.296 6.296 7 C 0.138 3.862 8 H 0.079 0.921 9 C -0.604 4.604 10 H 0.069 0.931 11 C -0.134 4.134 12 N -0.502 5.502 13 Si 0.737 3.263 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.229 1.229 17 C -0.104 4.104 18 N 0.085 4.915 19 C -0.179 4.179 20 C -0.183 4.183 21 C -0.193 4.193 22 C -0.142 4.142 23 N -0.171 5.171 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.142 0.858 27 H 0.240 0.760 28 H 0.043 0.957 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.156 0.844 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.163 0.837 41 H 0.141 0.859 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.961 19.553 0.073 23.459 hybrid contribution 2.178 -1.257 0.023 2.515 sum -10.783 18.296 0.096 21.237 Atomic orbital electron populations 1.22194 0.72079 1.05934 1.04525 1.48842 1.07922 1.03591 1.55965 1.22912 0.89476 0.94712 0.99240 1.20060 0.95274 0.92943 1.17619 1.20309 0.91104 0.96231 0.85417 1.88139 1.45271 1.71543 1.24619 1.19940 0.84412 0.89360 0.92480 0.92145 1.21646 1.06285 1.21526 1.10971 0.93104 1.25079 0.96022 0.96681 0.95614 1.69744 1.32434 1.34616 1.13383 0.86333 0.82625 0.79439 0.77854 1.20104 1.21050 1.22922 1.24067 0.89357 0.91800 1.05204 1.45967 1.15115 1.14841 1.15581 1.24238 0.84109 1.00161 1.09361 1.24167 1.09682 0.96990 0.87481 1.24267 1.09545 0.98233 0.87212 1.23917 0.94758 0.96554 0.98993 1.77346 1.02462 1.10461 1.26807 0.89706 0.90225 0.85781 0.76005 0.95690 0.90478 0.92969 0.86043 0.85941 0.89337 0.84414 0.86323 0.86046 0.83950 0.87865 0.87630 0.83662 0.85880 0.81691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.54 11.47 127.77 1.47 0.92 16 2 N -0.38 -1.22 4.01 -369.55 -1.48 -2.70 16 3 C 0.08 -0.17 11.40 83.54 0.95 0.78 16 4 C -0.25 -1.24 5.73 -20.15 -0.12 -1.35 16 5 C 0.15 0.37 5.54 71.23 0.39 0.77 16 6 O -0.38 -1.64 6.44 -148.98 -0.96 -2.60 16 7 C 0.19 0.43 1.85 29.85 0.06 0.49 16 8 H 0.06 -0.25 5.49 -2.39 -0.01 -0.27 16 9 C -0.57 -9.33 8.89 25.60 0.23 -9.10 16 10 H 0.05 1.00 7.81 -2.91 -0.02 0.98 16 11 C 0.07 1.56 5.24 84.65 0.44 2.00 16 12 N -0.87 -18.80 10.95 21.45 0.23 -18.57 16 13 Si 0.91 20.57 29.54 68.60 2.03 22.60 16 14 H -0.28 -6.45 7.11 99.48 0.71 -5.75 16 15 H -0.28 -6.61 7.11 99.48 0.71 -5.91 16 16 H -0.30 -8.04 7.11 99.48 0.71 -7.33 16 17 C 0.02 -0.12 3.53 86.30 0.30 0.19 16 18 N -0.26 5.52 0.05 ******* -0.07 5.45 16 19 C -0.04 0.74 7.17 127.69 0.92 1.65 16 20 C -0.04 1.13 8.00 127.69 1.02 2.16 16 21 C -0.05 1.36 7.54 127.69 0.96 2.33 16 22 C 0.04 0.54 11.96 85.24 1.02 1.56 16 23 N -0.35 -4.55 12.58 -57.02 -0.72 -5.27 16 24 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 25 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.12 -1.69 8.14 -2.39 -0.02 -1.71 16 27 H 0.22 -3.21 8.06 -2.91 -0.02 -3.24 16 28 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.08 -0.53 8.08 -2.39 -0.02 -0.54 16 30 H 0.26 6.23 8.31 -92.71 -0.77 5.46 16 31 H 0.12 0.16 6.12 -2.38 -0.01 0.15 16 32 H 0.12 -1.05 8.09 -2.39 -0.02 -1.07 16 33 H 0.09 -1.12 7.94 -2.39 -0.02 -1.14 16 34 H 0.14 -3.93 8.01 -2.39 -0.02 -3.95 16 35 H 0.12 -1.90 5.04 -2.39 -0.01 -1.91 16 36 H 0.12 -3.39 8.12 -2.39 -0.02 -3.41 16 37 H 0.14 -4.69 8.07 -2.39 -0.02 -4.71 16 38 H 0.10 -2.41 8.14 -2.39 -0.02 -2.43 16 39 H 0.11 -2.42 5.86 -2.38 -0.01 -2.43 16 40 H 0.15 -4.82 8.14 -2.39 -0.02 -4.84 16 41 H 0.12 -3.38 8.14 -2.39 -0.02 -3.39 16 42 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 Total: 0.00 -52.30 333.25 7.66 -44.64 By element: Atomic # 1 Polarization: -46.92 SS G_CDS: 0.98 Total: -45.94 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 7.65 Total: 2.38 kcal Atomic # 7 Polarization: -19.05 SS G_CDS: -2.03 Total: -21.08 kcal Atomic # 8 Polarization: -1.64 SS G_CDS: -0.96 Total: -2.60 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: 2.03 Total: 22.60 kcal Total: -52.30 7.66 -44.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222429999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.036 kcal (2) G-P(sol) polarization free energy of solvation -52.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds