Wall clock time and date at job start Mon Mar 30 2020 01:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35045 * 126.39836 * 2 1 4 4 N 1.30499 * 108.69833 * 180.26451 * 3 2 1 5 5 C 1.34123 * 109.25789 * 359.76823 * 4 3 2 6 6 C 1.34667 * 108.02241 * 359.97438 * 5 4 3 7 7 C 1.50693 * 126.59390 * 179.97438 * 6 5 4 8 8 O 1.42904 * 109.47483 * 0.02562 * 7 6 5 9 9 C 1.42892 * 114.00355 * 184.47343 * 8 7 6 10 10 H 1.09004 * 109.47036 * 334.91503 * 9 8 7 11 11 C 1.50702 * 109.46813 * 214.92180 * 9 8 7 12 12 H 1.07999 * 120.00435 * 355.26189 * 11 9 8 13 13 C 1.37885 * 119.99757 * 174.99232 * 11 9 8 14 14 N 1.31514 * 120.00084 * 0.27110 * 13 11 9 15 15 Si 1.86797 * 119.99882 * 180.27239 * 13 11 9 16 16 H 1.48510 * 109.47165 * 89.99909 * 15 13 11 17 17 H 1.48503 * 109.47318 * 209.99724 * 15 13 11 18 18 H 1.48502 * 109.47487 * 330.00196 * 15 13 11 19 19 C 1.52999 * 109.47475 * 94.92235 * 9 8 7 20 20 N 1.46894 * 109.47076 * 54.23434 * 19 9 8 21 21 C 1.46893 * 109.47451 * 54.16841 * 20 19 9 22 22 C 1.46905 * 109.47263 * 174.16935 * 20 19 9 23 23 C 1.46907 * 109.47023 * 294.16438 * 20 19 9 24 24 H 1.08999 * 109.47173 * 270.12251 * 1 2 3 25 25 H 1.09001 * 109.46802 * 30.12362 * 1 2 3 26 26 H 1.09002 * 109.46937 * 150.12137 * 1 2 3 27 27 H 1.08000 * 125.64999 * 0.07078 * 3 2 1 28 28 H 1.08003 * 125.99078 * 179.97438 * 5 4 3 29 29 H 1.09005 * 109.47654 * 240.02513 * 7 6 5 30 30 H 1.08997 * 109.47424 * 120.02726 * 7 6 5 31 31 H 0.96998 * 119.99871 * 179.97438 * 14 13 11 32 32 H 1.08996 * 109.47295 * 174.23680 * 19 9 8 33 33 H 1.09007 * 109.46425 * 294.23278 * 19 9 8 34 34 H 1.08998 * 109.47158 * 50.79719 * 21 20 19 35 35 H 1.08995 * 109.47472 * 170.80133 * 21 20 19 36 36 H 1.09004 * 109.47248 * 290.80133 * 21 20 19 37 37 H 1.09003 * 109.46768 * 59.99724 * 22 20 19 38 38 H 1.08990 * 109.47359 * 180.02562 * 22 20 19 39 39 H 1.09004 * 109.46605 * 300.00004 * 22 20 19 40 40 H 1.09006 * 109.46743 * 76.48223 * 23 20 19 41 41 H 1.09001 * 109.46677 * 196.47805 * 23 20 19 42 42 H 1.08995 * 109.47300 * 316.47791 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6902 -0.0057 5 6 3.5460 -0.6505 -0.0044 6 6 2.2773 -1.1018 0.0030 7 6 1.8364 -2.5428 0.0064 8 8 2.9853 -3.3926 0.0013 9 6 2.6782 -4.7846 -0.0978 10 1 1.6740 -4.9634 0.2864 11 6 3.6735 -5.5772 0.7098 12 1 4.5060 -5.0772 1.1824 13 6 3.5182 -6.9401 0.8501 14 7 2.5045 -7.5491 0.2746 15 14 4.7476 -7.9214 1.8575 16 1 4.2980 -7.9750 3.2719 17 1 4.8427 -9.3008 1.3157 18 1 6.0795 -7.2686 1.7860 19 6 2.7487 -5.2195 -1.5630 20 7 4.0575 -4.8527 -2.1202 21 6 5.1227 -5.4097 -1.2759 22 6 4.1789 -5.3921 -3.4812 23 6 4.1796 -3.3893 -2.1609 24 1 -0.3633 0.0022 1.0276 25 1 -0.3633 0.8889 -0.5158 26 1 -0.3633 -0.8911 -0.5120 27 1 1.9335 2.1144 0.0011 28 1 4.4368 -1.2612 -0.0085 29 1 1.2341 -2.7407 -0.8803 30 1 1.2433 -2.7392 0.8996 31 1 2.3955 -8.5079 0.3729 32 1 2.6157 -6.2993 -1.6283 33 1 1.9607 -4.7215 -2.1280 34 1 4.9386 -6.4714 -1.1121 35 1 6.0846 -5.2800 -1.7718 36 1 5.1352 -4.8910 -0.3173 37 1 3.3884 -4.9788 -4.1077 38 1 5.1501 -5.1204 -3.8945 39 1 4.0882 -6.4780 -3.4510 40 1 4.3830 -3.0137 -1.1580 41 1 4.9974 -3.1114 -2.8258 42 1 3.2492 -2.9571 -2.5291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222594638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:14 Heat of formation + Delta-G solvation = 133.119881 kcal Electronic energy + Delta-G solvation = -22326.078584 eV Core-core repulsion = 19233.784427 eV Total energy + Delta-G solvation = -3092.294157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.177 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.22063 -42.93739 -38.68348 -35.15595 -35.02618 -32.26683 -30.71515 -30.13184 -29.95391 -28.03057 -27.77640 -26.63761 -24.48003 -23.10156 -22.12706 -21.12290 -19.19774 -18.49658 -18.30209 -17.94734 -17.72572 -17.05704 -16.55113 -16.02298 -15.92950 -15.50086 -14.95611 -14.82248 -14.62810 -14.48752 -14.03640 -13.96360 -13.84390 -13.74448 -13.68221 -13.53118 -13.47740 -13.20411 -12.95350 -12.51888 -12.31090 -12.15375 -11.62634 -11.14651 -10.86484 -10.63948 -10.46822 -10.16250 -9.26782 -7.97541 -6.04453 0.67349 1.01541 1.61681 1.95479 2.07339 2.14112 2.25243 2.54760 2.65239 2.69259 2.75264 2.99408 3.35712 3.39863 3.48976 3.60987 3.70003 3.78780 3.85513 3.87590 3.90837 3.95509 3.99661 4.10559 4.15527 4.22842 4.28751 4.33845 4.42564 4.50004 4.56544 4.76630 4.84534 5.02126 5.19879 5.32212 5.77507 5.91765 6.11389 6.17384 6.35992 7.01486 7.14356 7.63137 9.08423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.458 5.458 3 C 0.184 3.816 4 N -0.495 5.495 5 C -0.004 4.004 6 C -0.036 4.036 7 C 0.142 3.858 8 O -0.381 6.381 9 C 0.200 3.800 10 H 0.067 0.933 11 C -0.549 4.549 12 H 0.086 0.914 13 C 0.070 3.930 14 N -0.879 5.879 15 Si 0.902 3.098 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.264 1.264 19 C -0.021 4.021 20 N -0.248 5.248 21 C -0.037 4.037 22 C -0.043 4.043 23 C -0.041 4.041 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.206 0.794 28 H 0.171 0.829 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.283 0.717 32 H 0.148 0.852 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.161 0.839 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.147 0.853 41 H 0.095 0.905 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 5.287 -10.649 11.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.143 5.143 3 C -0.097 4.097 4 N -0.212 5.212 5 C -0.152 4.152 6 C -0.150 4.150 7 C 0.064 3.936 8 O -0.300 6.300 9 C 0.143 3.857 10 H 0.085 0.915 11 C -0.586 4.586 12 H 0.104 0.896 13 C -0.137 4.137 14 N -0.514 5.514 15 Si 0.727 3.273 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.189 1.189 19 C -0.142 4.142 20 N 0.094 4.906 21 C -0.177 4.177 22 C -0.185 4.185 23 C -0.182 4.182 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.223 0.777 28 H 0.188 0.812 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.165 0.835 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.178 0.822 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.165 0.835 41 H 0.114 0.886 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.416 5.658 -10.670 12.084 hybrid contribution -0.815 -1.228 0.459 1.544 sum -1.231 4.429 -10.211 11.198 Atomic orbital electron populations 1.22107 0.76421 1.04817 1.04087 1.45209 1.07630 1.06387 1.55041 1.25027 0.85564 0.93363 1.05791 1.70342 1.19343 1.12148 1.19412 1.22033 0.95807 0.90567 1.06826 1.20827 0.91782 0.89209 1.13170 1.20323 0.88707 0.84148 1.00411 1.87788 1.29644 1.18207 1.94410 1.20180 1.00948 0.76366 0.88225 0.91510 1.21000 1.11726 0.91745 1.34095 0.89573 1.24965 0.96243 0.97572 0.94950 1.69699 1.27993 1.12286 1.41386 0.86348 0.80465 0.79205 0.81299 1.19262 1.20273 1.18860 1.24743 0.80208 1.08130 1.01131 1.45718 1.17059 1.14379 1.13439 1.24944 0.87298 1.05829 0.99611 1.24009 1.07037 1.04559 0.82871 1.24417 1.05914 0.77707 1.10200 0.90121 0.89056 0.89716 0.77699 0.81167 0.93058 0.91766 0.90677 0.83465 0.89689 0.86711 0.90417 0.82203 0.87614 0.87318 0.86884 0.83493 0.88634 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.31 11.01 59.85 0.66 0.35 16 2 N -0.46 0.45 3.15 -121.37 -0.38 0.06 16 3 C 0.18 0.05 12.56 -90.37 -1.14 -1.08 16 4 N -0.49 -1.53 11.25 -14.67 -0.16 -1.70 16 5 C 0.00 -0.01 10.98 -17.82 -0.20 -0.20 16 6 C -0.04 0.00 6.93 -81.60 -0.57 -0.56 16 7 C 0.14 -0.22 5.83 36.00 0.21 -0.01 16 8 O -0.38 0.42 5.28 -35.23 -0.19 0.24 16 9 C 0.20 0.09 2.24 -27.88 -0.06 0.03 16 10 H 0.07 0.22 7.76 -51.93 -0.40 -0.18 16 11 C -0.55 -2.02 5.17 -34.44 -0.18 -2.19 16 12 H 0.09 0.37 6.74 -52.49 -0.35 0.01 16 13 C 0.07 0.41 4.14 -17.82 -0.07 0.34 16 14 N -0.88 -6.27 11.67 55.43 0.65 -5.63 16 15 Si 0.90 5.70 29.54 -169.99 -5.02 0.68 16 16 H -0.27 -2.30 7.11 56.52 0.40 -1.90 16 17 H -0.28 -2.04 7.11 56.52 0.40 -1.64 16 18 H -0.26 -1.51 7.11 56.52 0.40 -1.11 16 19 C -0.02 0.08 4.20 -3.83 -0.02 0.06 16 20 N -0.25 1.78 0.05 -395.62 -0.02 1.76 16 21 C -0.04 0.19 6.59 60.06 0.40 0.58 16 22 C -0.04 0.42 7.93 60.07 0.48 0.90 16 23 C -0.04 0.32 7.20 60.07 0.43 0.75 16 24 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 25 H 0.09 -0.56 8.14 -51.93 -0.42 -0.98 16 26 H 0.08 -0.46 7.89 -51.93 -0.41 -0.87 16 27 H 0.21 -0.62 8.06 -52.49 -0.42 -1.05 16 28 H 0.17 -0.01 6.86 -52.48 -0.36 -0.37 16 29 H 0.05 -0.18 8.14 -51.93 -0.42 -0.60 16 30 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.28 2.24 8.31 -40.82 -0.34 1.90 16 32 H 0.15 -0.17 6.29 -51.93 -0.33 -0.50 16 33 H 0.08 -0.48 7.88 -51.93 -0.41 -0.89 16 34 H 0.11 -0.33 6.53 -51.93 -0.34 -0.67 16 35 H 0.08 -0.60 8.01 -51.93 -0.42 -1.02 16 36 H 0.16 -0.44 4.23 -51.93 -0.22 -0.66 16 37 H 0.11 -1.16 8.14 -51.93 -0.42 -1.58 16 38 H 0.11 -1.25 7.95 -51.93 -0.41 -1.66 16 39 H 0.11 -1.06 8.11 -51.93 -0.42 -1.48 16 40 H 0.15 -0.81 3.91 -51.93 -0.20 -1.01 16 41 H 0.10 -0.93 7.86 -51.93 -0.41 -1.34 16 42 H 0.10 -0.77 7.77 -51.93 -0.40 -1.17 16 LS Contribution 321.91 15.07 4.85 4.85 Total: 0.00 -13.69 321.91 -7.09 -20.77 By element: Atomic # 1 Polarization: -13.24 SS G_CDS: -6.76 Total: -20.00 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -0.05 Total: -1.04 kcal Atomic # 7 Polarization: -5.58 SS G_CDS: 0.08 Total: -5.50 kcal Atomic # 8 Polarization: 0.42 SS G_CDS: -0.19 Total: 0.24 kcal Atomic # 14 Polarization: 5.70 SS G_CDS: -5.02 Total: 0.68 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -13.69 -7.09 -20.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222594638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.892 kcal (2) G-P(sol) polarization free energy of solvation -13.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds