Wall clock time and date at job start Mon Mar 30 2020 01:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35045 * 126.39836 * 2 1 4 4 N 1.30499 * 108.69833 * 180.26451 * 3 2 1 5 5 C 1.34123 * 109.25789 * 359.76823 * 4 3 2 6 6 C 1.34667 * 108.02241 * 359.97438 * 5 4 3 7 7 C 1.50693 * 126.59390 * 179.97438 * 6 5 4 8 8 O 1.42904 * 109.47483 * 0.02562 * 7 6 5 9 9 C 1.42892 * 114.00355 * 184.47343 * 8 7 6 10 10 H 1.09004 * 109.47036 * 334.91503 * 9 8 7 11 11 C 1.50702 * 109.46813 * 214.92180 * 9 8 7 12 12 H 1.07999 * 120.00435 * 355.26189 * 11 9 8 13 13 C 1.37885 * 119.99757 * 174.99232 * 11 9 8 14 14 N 1.31514 * 120.00084 * 0.27110 * 13 11 9 15 15 Si 1.86797 * 119.99882 * 180.27239 * 13 11 9 16 16 H 1.48510 * 109.47165 * 89.99909 * 15 13 11 17 17 H 1.48503 * 109.47318 * 209.99724 * 15 13 11 18 18 H 1.48502 * 109.47487 * 330.00196 * 15 13 11 19 19 C 1.52999 * 109.47475 * 94.92235 * 9 8 7 20 20 N 1.46894 * 109.47076 * 54.23434 * 19 9 8 21 21 C 1.46893 * 109.47451 * 54.16841 * 20 19 9 22 22 C 1.46905 * 109.47263 * 174.16935 * 20 19 9 23 23 C 1.46907 * 109.47023 * 294.16438 * 20 19 9 24 24 H 1.08999 * 109.47173 * 270.12251 * 1 2 3 25 25 H 1.09001 * 109.46802 * 30.12362 * 1 2 3 26 26 H 1.09002 * 109.46937 * 150.12137 * 1 2 3 27 27 H 1.08000 * 125.64999 * 0.07078 * 3 2 1 28 28 H 1.08003 * 125.99078 * 179.97438 * 5 4 3 29 29 H 1.09005 * 109.47654 * 240.02513 * 7 6 5 30 30 H 1.08997 * 109.47424 * 120.02726 * 7 6 5 31 31 H 0.96998 * 119.99871 * 179.97438 * 14 13 11 32 32 H 1.08996 * 109.47295 * 174.23680 * 19 9 8 33 33 H 1.09007 * 109.46425 * 294.23278 * 19 9 8 34 34 H 1.08998 * 109.47158 * 50.79719 * 21 20 19 35 35 H 1.08995 * 109.47472 * 170.80133 * 21 20 19 36 36 H 1.09004 * 109.47248 * 290.80133 * 21 20 19 37 37 H 1.09003 * 109.46768 * 59.99724 * 22 20 19 38 38 H 1.08990 * 109.47359 * 180.02562 * 22 20 19 39 39 H 1.09004 * 109.46605 * 300.00004 * 22 20 19 40 40 H 1.09006 * 109.46743 * 76.48223 * 23 20 19 41 41 H 1.09001 * 109.46677 * 196.47805 * 23 20 19 42 42 H 1.08995 * 109.47300 * 316.47791 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6902 -0.0057 5 6 3.5460 -0.6505 -0.0044 6 6 2.2773 -1.1018 0.0030 7 6 1.8364 -2.5428 0.0064 8 8 2.9853 -3.3926 0.0013 9 6 2.6782 -4.7846 -0.0978 10 1 1.6740 -4.9634 0.2864 11 6 3.6735 -5.5772 0.7098 12 1 4.5060 -5.0772 1.1824 13 6 3.5182 -6.9401 0.8501 14 7 2.5045 -7.5491 0.2746 15 14 4.7476 -7.9214 1.8575 16 1 4.2980 -7.9750 3.2719 17 1 4.8427 -9.3008 1.3157 18 1 6.0795 -7.2686 1.7860 19 6 2.7487 -5.2195 -1.5630 20 7 4.0575 -4.8527 -2.1202 21 6 5.1227 -5.4097 -1.2759 22 6 4.1789 -5.3921 -3.4812 23 6 4.1796 -3.3893 -2.1609 24 1 -0.3633 0.0022 1.0276 25 1 -0.3633 0.8889 -0.5158 26 1 -0.3633 -0.8911 -0.5120 27 1 1.9335 2.1144 0.0011 28 1 4.4368 -1.2612 -0.0085 29 1 1.2341 -2.7407 -0.8803 30 1 1.2433 -2.7392 0.8996 31 1 2.3955 -8.5079 0.3729 32 1 2.6157 -6.2993 -1.6283 33 1 1.9607 -4.7215 -2.1280 34 1 4.9386 -6.4714 -1.1121 35 1 6.0846 -5.2800 -1.7718 36 1 5.1352 -4.8910 -0.3173 37 1 3.3884 -4.9788 -4.1077 38 1 5.1501 -5.1204 -3.8945 39 1 4.0882 -6.4780 -3.4510 40 1 4.3830 -3.0137 -1.1580 41 1 4.9974 -3.1114 -2.8258 42 1 3.2492 -2.9571 -2.5291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222594638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:14 Heat of formation + Delta-G solvation = 133.046652 kcal Electronic energy + Delta-G solvation = -22326.081759 eV Core-core repulsion = 19233.784427 eV Total energy + Delta-G solvation = -3092.297332 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.03648 -42.62234 -38.58462 -35.41297 -34.91814 -32.28452 -30.61579 -29.72720 -29.34525 -27.78207 -27.62435 -26.61889 -24.29850 -22.92673 -22.05509 -21.04592 -19.23809 -18.24923 -18.10168 -17.61961 -17.37443 -16.93407 -16.58057 -16.10103 -15.76936 -15.51435 -14.92374 -14.53384 -14.32304 -14.15813 -13.83156 -13.73603 -13.49699 -13.40733 -13.37207 -13.21383 -13.12592 -12.95256 -12.84200 -12.68424 -12.58283 -12.16975 -12.03552 -11.34315 -10.88289 -10.73216 -10.54158 -10.34260 -9.23289 -8.44212 -6.43139 1.08086 1.20407 1.35929 1.49515 1.56016 1.77219 2.23889 2.25805 2.83371 2.91804 3.18407 3.27677 3.33577 3.79195 3.95504 4.05989 4.09839 4.13020 4.25106 4.31520 4.35383 4.39619 4.45467 4.50348 4.52125 4.59984 4.70863 4.72064 4.77802 4.83610 4.86866 4.94593 5.01231 5.25682 5.34341 5.39641 5.57639 5.81851 5.82477 6.23508 6.31358 6.67446 7.16854 7.21639 8.60484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.457 5.457 3 C 0.179 3.821 4 N -0.540 5.540 5 C -0.025 4.025 6 C -0.033 4.033 7 C 0.146 3.854 8 O -0.376 6.376 9 C 0.202 3.798 10 H 0.038 0.962 11 C -0.525 4.525 12 H 0.079 0.921 13 C 0.053 3.947 14 N -0.898 5.898 15 Si 0.919 3.081 16 H -0.303 1.303 17 H -0.293 1.293 18 H -0.253 1.253 19 C -0.005 4.005 20 N -0.239 5.239 21 C -0.036 4.036 22 C -0.045 4.045 23 C -0.041 4.041 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.097 0.903 27 H 0.232 0.768 28 H 0.174 0.826 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.271 0.729 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 6.835 -12.977 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.141 5.141 3 C -0.103 4.103 4 N -0.259 5.259 5 C -0.172 4.172 6 C -0.148 4.148 7 C 0.068 3.932 8 O -0.295 6.295 9 C 0.145 3.855 10 H 0.055 0.945 11 C -0.562 4.562 12 H 0.096 0.904 13 C -0.151 4.151 14 N -0.535 5.535 15 Si 0.748 3.252 16 H -0.230 1.230 17 H -0.219 1.219 18 H -0.177 1.177 19 C -0.127 4.127 20 N 0.103 4.897 21 C -0.177 4.177 22 C -0.185 4.185 23 C -0.182 4.182 24 H 0.101 0.899 25 H 0.130 0.870 26 H 0.116 0.884 27 H 0.248 0.752 28 H 0.191 0.809 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.151 0.849 39 H 0.124 0.876 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.774 7.219 -13.006 14.895 hybrid contribution -0.666 -1.600 1.235 2.128 sum -1.441 5.619 -11.771 13.123 Atomic orbital electron populations 1.22381 0.74284 1.06534 1.04760 1.45414 1.08908 1.05717 1.54013 1.25542 0.85187 0.94670 1.04903 1.70288 1.21223 1.13134 1.21231 1.22195 0.96737 0.90380 1.07915 1.20936 0.91575 0.89864 1.12464 1.20337 0.88460 0.83329 1.01078 1.87838 1.29757 1.17278 1.94676 1.19875 0.98069 0.76986 0.90558 0.94474 1.21192 1.11335 0.91250 1.32459 0.90355 1.24980 0.96188 0.98284 0.95601 1.69755 1.29025 1.11337 1.43425 0.86139 0.81309 0.78737 0.79012 1.23031 1.21934 1.17686 1.24222 0.83042 1.06908 0.98567 1.45526 1.14673 1.14966 1.14494 1.24641 0.89553 1.03937 0.99566 1.24196 1.09268 1.04252 0.80828 1.24424 1.07565 0.76728 1.09506 0.89941 0.87015 0.88440 0.75168 0.80917 0.90235 0.93140 0.91940 0.85607 0.86634 0.89084 0.86857 0.84933 0.85718 0.84856 0.87563 0.85835 0.85735 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.65 11.01 127.77 1.41 0.76 16 2 N -0.46 1.29 3.15 -537.89 -1.70 -0.41 16 3 C 0.18 0.02 12.56 180.26 2.26 2.29 16 4 N -0.54 -3.57 11.25 -200.31 -2.25 -5.82 16 5 C -0.02 -0.08 10.98 83.52 0.92 0.84 16 6 C -0.03 0.02 6.93 40.95 0.28 0.30 16 7 C 0.15 -0.52 5.83 71.23 0.42 -0.10 16 8 O -0.38 0.78 5.28 -148.98 -0.79 -0.01 16 9 C 0.20 0.31 2.24 29.85 0.07 0.38 16 10 H 0.04 0.29 7.76 -2.39 -0.02 0.28 16 11 C -0.52 -4.68 5.17 25.60 0.13 -4.55 16 12 H 0.08 0.80 6.74 -2.91 -0.02 0.79 16 13 C 0.05 0.74 4.14 84.66 0.35 1.09 16 14 N -0.90 -14.86 11.67 21.45 0.25 -14.61 16 15 Si 0.92 13.94 29.54 68.60 2.03 15.97 16 16 H -0.30 -6.28 7.11 99.48 0.71 -5.58 16 17 H -0.29 -5.11 7.11 99.48 0.71 -4.40 16 18 H -0.25 -3.22 7.11 99.48 0.71 -2.51 16 19 C 0.00 0.04 4.20 86.30 0.36 0.40 16 20 N -0.24 3.77 0.05 ******* -0.07 3.70 16 21 C -0.04 0.37 6.59 127.69 0.84 1.22 16 22 C -0.04 0.99 7.93 127.69 1.01 2.00 16 23 C -0.04 0.72 7.20 127.69 0.92 1.64 16 24 H 0.08 -0.86 8.14 -2.39 -0.02 -0.88 16 25 H 0.11 -1.62 8.14 -2.39 -0.02 -1.64 16 26 H 0.10 -1.26 7.89 -2.39 -0.02 -1.28 16 27 H 0.23 -1.63 8.06 -2.91 -0.02 -1.66 16 28 H 0.17 0.16 6.86 -2.91 -0.02 0.14 16 29 H 0.08 -0.72 8.14 -2.38 -0.02 -0.74 16 30 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.27 5.04 8.31 -92.71 -0.77 4.27 16 32 H 0.13 -0.25 6.29 -2.39 -0.02 -0.26 16 33 H 0.12 -1.56 7.88 -2.38 -0.02 -1.58 16 34 H 0.09 -0.44 6.53 -2.39 -0.02 -0.45 16 35 H 0.11 -1.96 8.01 -2.39 -0.02 -1.98 16 36 H 0.13 -0.63 4.23 -2.38 -0.01 -0.64 16 37 H 0.12 -3.16 8.14 -2.39 -0.02 -3.18 16 38 H 0.13 -3.54 7.95 -2.39 -0.02 -3.55 16 39 H 0.11 -2.12 8.11 -2.38 -0.02 -2.14 16 40 H 0.12 -1.44 3.91 -2.38 -0.01 -1.45 16 41 H 0.12 -2.82 7.86 -2.39 -0.02 -2.84 16 42 H 0.11 -1.97 7.77 -2.39 -0.02 -1.99 16 Total: 0.00 -35.69 321.91 7.43 -28.25 By element: Atomic # 1 Polarization: -34.31 SS G_CDS: 0.99 Total: -33.32 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 8.97 Total: 6.26 kcal Atomic # 7 Polarization: -13.38 SS G_CDS: -3.77 Total: -17.15 kcal Atomic # 8 Polarization: 0.78 SS G_CDS: -0.79 Total: -0.01 kcal Atomic # 14 Polarization: 13.94 SS G_CDS: 2.03 Total: 15.97 kcal Total: -35.69 7.43 -28.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222594638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.300 kcal (2) G-P(sol) polarization free energy of solvation -35.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds