Wall clock time and date at job start Mon Mar 30 2020 01:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35041 * 126.39784 * 2 1 4 4 N 1.30500 * 108.69719 * 179.82955 * 3 2 1 5 5 C 1.34124 * 109.25936 * 0.44507 * 4 3 2 6 6 C 1.50703 * 125.99221 * 179.72879 * 5 4 3 7 7 O 1.42894 * 109.47170 * 179.97438 * 6 5 4 8 8 C 1.42903 * 114.00236 * 179.97438 * 7 6 5 9 9 H 1.09006 * 109.46550 * 30.00052 * 8 7 6 10 10 C 1.50696 * 109.47063 * 270.00535 * 8 7 6 11 11 H 1.08000 * 120.00205 * 124.72772 * 10 8 7 12 12 C 1.37881 * 120.00207 * 304.71709 * 10 8 7 13 13 N 1.31513 * 120.00366 * 192.29588 * 12 10 8 14 14 Si 1.86808 * 119.99612 * 12.29767 * 12 10 8 15 15 H 1.48508 * 109.46849 * 90.01025 * 14 12 10 16 16 H 1.48492 * 109.47005 * 210.00639 * 14 12 10 17 17 H 1.48498 * 109.46844 * 330.01094 * 14 12 10 18 18 C 1.52993 * 109.47113 * 149.99990 * 8 7 6 19 19 N 1.46900 * 109.47050 * 191.11348 * 18 8 7 20 20 C 1.46901 * 109.47056 * 53.74625 * 19 18 8 21 21 C 1.46894 * 109.47493 * 173.74646 * 19 18 8 22 22 C 1.46897 * 109.47408 * 293.75047 * 19 18 8 23 23 C 1.34669 * 108.01932 * 359.72522 * 5 4 3 24 24 H 1.08997 * 109.47171 * 269.68350 * 1 2 3 25 25 H 1.08994 * 109.47022 * 29.68326 * 1 2 3 26 26 H 1.08996 * 109.47130 * 149.68294 * 1 2 3 27 27 H 1.07997 * 125.65094 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.46816 * 300.00100 * 6 5 4 29 29 H 1.09001 * 109.47281 * 59.99532 * 6 5 4 30 30 H 0.96999 * 119.99817 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47313 * 311.11226 * 18 8 7 32 32 H 1.09007 * 109.47268 * 71.11935 * 18 8 7 33 33 H 1.09004 * 109.47132 * 51.97494 * 20 19 18 34 34 H 1.09002 * 109.47149 * 171.96752 * 20 19 18 35 35 H 1.08991 * 109.47446 * 291.97276 * 20 19 18 36 36 H 1.09000 * 109.47346 * 59.99943 * 21 19 18 37 37 H 1.08998 * 109.47965 * 180.02562 * 21 19 18 38 38 H 1.09005 * 109.47578 * 300.00594 * 21 19 18 39 39 H 1.08994 * 109.47368 * 69.49517 * 22 19 18 40 40 H 1.09002 * 109.47172 * 189.49825 * 22 19 18 41 41 H 1.09003 * 109.46919 * 309.49495 * 22 19 18 42 42 H 1.08000 * 126.59088 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6902 0.0037 5 6 3.5460 -0.6505 -0.0037 6 6 4.7890 -1.5026 -0.0084 7 8 4.4202 -2.8831 -0.0154 8 6 5.5313 -3.7817 -0.0208 9 1 6.3738 -3.3208 0.4949 10 6 5.9210 -4.0900 -1.4435 11 1 6.9347 -3.9196 -1.7748 12 6 4.9835 -4.5898 -2.3223 13 7 5.3648 -5.0841 -3.4798 14 14 3.1715 -4.5648 -1.8687 15 1 2.5628 -3.2918 -2.3319 16 1 2.4826 -5.7083 -2.5191 17 1 3.0287 -4.6742 -0.3947 18 6 5.1428 -5.0775 0.6939 19 7 6.3454 -5.8890 0.9243 20 6 7.3522 -5.0836 1.6283 21 6 5.9971 -7.0598 1.7403 22 6 6.8896 -6.3352 -0.3651 23 6 2.2772 -1.1018 -0.0061 24 1 -0.3633 -0.0057 1.0276 25 1 -0.3633 0.8928 -0.5089 26 1 -0.3633 -0.8871 -0.5187 27 1 1.9335 2.1144 -0.0004 28 1 5.3793 -1.2793 -0.8972 29 1 5.3793 -1.2891 0.8828 30 1 4.7051 -5.4354 -4.0981 31 1 4.6765 -4.8394 1.6498 32 1 4.4401 -5.6366 0.0760 33 1 6.9037 -4.6352 2.5149 34 1 8.1848 -5.7213 1.9254 35 1 7.7151 -4.2967 0.9672 36 1 5.2501 -7.6575 1.2180 37 1 6.8894 -7.6618 1.9117 38 1 5.5933 -6.7288 2.6971 39 1 7.3026 -5.4804 -0.9006 40 1 7.6757 -7.0704 -0.1929 41 1 6.0943 -6.7861 -0.9587 42 1 1.9612 -2.1345 -0.0122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223551186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:12 Heat of formation + Delta-G solvation = 138.700570 kcal Electronic energy + Delta-G solvation = -21946.580206 eV Core-core repulsion = 18854.528047 eV Total energy + Delta-G solvation = -3092.052160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.177 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.33368 -42.76179 -38.65600 -35.05838 -34.34955 -32.33487 -30.61802 -30.36623 -30.03727 -28.54337 -27.79087 -26.07345 -24.57310 -22.78724 -21.86986 -21.02824 -19.50024 -18.51313 -18.40250 -18.04008 -17.54980 -16.89378 -16.47422 -16.20345 -15.48123 -15.22890 -15.03173 -14.83826 -14.64104 -14.59851 -14.25227 -14.11558 -14.08221 -13.98415 -13.70625 -13.60424 -13.49408 -13.28983 -12.87599 -12.33155 -12.08446 -11.95959 -11.79773 -10.77211 -10.60785 -10.37297 -10.16818 -9.92706 -9.01538 -7.77318 -5.95663 0.30376 1.32921 1.90657 2.02268 2.04288 2.18119 2.28269 2.38418 2.38994 2.41837 2.91978 3.01781 3.15186 3.22843 3.41588 3.56562 3.61673 3.68160 3.74204 3.81272 3.83526 3.90545 4.03400 4.11200 4.14162 4.18195 4.24953 4.39457 4.44937 4.55359 4.72578 4.86557 4.95236 5.06424 5.19728 5.49721 5.69249 5.96821 6.34922 6.53027 6.74091 7.15244 7.35091 7.80746 9.28920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.468 5.468 3 C 0.182 3.818 4 N -0.487 5.487 5 C -0.001 4.001 6 C 0.161 3.839 7 O -0.389 6.389 8 C 0.168 3.832 9 H 0.054 0.946 10 C -0.591 4.591 11 H 0.091 0.909 12 C 0.094 3.906 13 N -0.850 5.850 14 Si 0.894 3.106 15 H -0.269 1.269 16 H -0.302 1.302 17 H -0.254 1.254 18 C -0.006 4.006 19 N -0.254 5.254 20 C -0.046 4.046 21 C -0.040 4.040 22 C -0.042 4.042 23 C -0.034 4.034 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.207 0.793 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.280 0.720 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.162 0.838 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -6.539 13.995 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.152 5.152 3 C -0.100 4.100 4 N -0.207 5.207 5 C -0.129 4.129 6 C 0.083 3.917 7 O -0.309 6.309 8 C 0.111 3.889 9 H 0.071 0.929 10 C -0.626 4.626 11 H 0.109 0.891 12 C -0.118 4.118 13 N -0.481 5.481 14 Si 0.725 3.275 15 H -0.195 1.195 16 H -0.231 1.231 17 H -0.180 1.180 18 C -0.127 4.127 19 N 0.087 4.913 20 C -0.187 4.187 21 C -0.182 4.182 22 C -0.182 4.182 23 C -0.167 4.167 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.223 0.777 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.145 0.855 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.180 0.820 40 H 0.109 0.891 41 H 0.133 0.867 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.853 -6.182 13.788 15.224 hybrid contribution -1.807 -0.307 -0.102 1.836 sum 0.046 -6.489 13.686 15.147 Atomic orbital electron populations 1.22055 0.76492 1.04864 1.03618 1.45449 1.07784 1.07186 1.54767 1.24957 0.85226 0.93668 1.06177 1.70043 1.19710 1.10878 1.20090 1.20369 0.93820 0.90429 1.08292 1.20093 0.91192 0.79506 1.00871 1.87678 1.33620 1.14801 1.94761 1.20283 0.86512 0.84799 0.97261 0.92854 1.21151 0.99434 1.48185 0.93856 0.89112 1.25027 0.99872 0.92307 0.94590 1.69885 1.36216 1.33560 1.08455 0.86743 0.83954 0.78320 0.78480 1.19462 1.23069 1.18010 1.24453 0.85083 0.98131 1.05040 1.45701 1.15466 1.14295 1.15849 1.24090 0.93544 0.99947 1.01153 1.24034 1.06737 0.88848 0.98612 1.24670 1.03377 1.07350 0.82826 1.22428 0.90760 0.92453 1.11028 0.90419 0.89247 0.89692 0.77689 0.90974 0.92778 0.90985 0.87633 0.85915 0.87152 0.86993 0.85477 0.86684 0.86675 0.87048 0.82025 0.89137 0.86749 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.11 11.18 59.85 0.67 0.56 16 2 N -0.47 -1.38 3.15 -126.00 -0.40 -1.77 16 3 C 0.18 0.66 12.56 -90.38 -1.14 -0.48 16 4 N -0.49 -3.28 11.25 -10.88 -0.12 -3.40 16 5 C 0.00 0.00 7.07 -82.85 -0.59 -0.59 16 6 C 0.16 0.70 6.36 36.01 0.23 0.93 16 7 O -0.39 -1.32 5.65 -35.23 -0.20 -1.52 16 8 C 0.17 0.00 2.00 -27.89 -0.06 -0.06 16 9 H 0.05 -0.13 5.41 -51.93 -0.28 -0.42 16 10 C -0.59 -2.85 6.12 -34.44 -0.21 -3.06 16 11 H 0.09 0.63 7.37 -52.49 -0.39 0.24 16 12 C 0.09 0.77 5.00 -17.82 -0.09 0.68 16 13 N -0.85 -9.72 13.96 55.43 0.77 -8.95 16 14 Si 0.89 6.53 24.35 -169.99 -4.14 2.39 16 15 H -0.27 -2.76 7.11 56.52 0.40 -2.36 16 16 H -0.30 -2.71 7.11 56.52 0.40 -2.31 16 17 H -0.25 -0.96 4.95 56.52 0.28 -0.68 16 18 C -0.01 0.03 3.20 -3.83 -0.01 0.02 16 19 N -0.25 2.40 0.05 -395.63 -0.02 2.38 16 20 C -0.05 0.51 7.38 60.07 0.44 0.95 16 21 C -0.04 0.50 7.97 60.06 0.48 0.98 16 22 C -0.04 0.28 6.93 60.06 0.42 0.70 16 23 C -0.03 -0.17 10.89 -16.56 -0.18 -0.35 16 24 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 25 H 0.09 -0.29 8.14 -51.93 -0.42 -0.71 16 26 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 27 H 0.21 -0.07 8.06 -52.49 -0.42 -0.50 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.12 8.09 -51.93 -0.42 -0.30 16 30 H 0.28 3.23 8.31 -40.82 -0.34 2.89 16 31 H 0.11 -0.73 8.06 -51.93 -0.42 -1.14 16 32 H 0.12 -0.34 4.60 -51.93 -0.24 -0.57 16 33 H 0.11 -1.35 8.07 -51.93 -0.42 -1.77 16 34 H 0.11 -1.50 8.03 -51.93 -0.42 -1.91 16 35 H 0.13 -1.20 6.09 -51.93 -0.32 -1.52 16 36 H 0.11 -1.38 8.14 -51.93 -0.42 -1.81 16 37 H 0.11 -1.63 8.01 -51.93 -0.42 -2.05 16 38 H 0.11 -1.52 8.10 -51.93 -0.42 -1.94 16 39 H 0.16 -0.54 4.71 -51.93 -0.24 -0.79 16 40 H 0.09 -0.87 8.00 -51.93 -0.42 -1.28 16 41 H 0.11 -0.48 7.62 -51.93 -0.40 -0.87 16 42 H 0.17 0.72 7.81 -52.49 -0.41 0.31 16 LS Contribution 321.28 15.07 4.84 4.84 Total: 0.00 -20.14 321.28 -6.29 -26.43 By element: Atomic # 1 Polarization: -13.69 SS G_CDS: -6.99 Total: -20.68 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.03 Total: 0.29 kcal Atomic # 7 Polarization: -11.98 SS G_CDS: 0.23 Total: -11.75 kcal Atomic # 8 Polarization: -1.32 SS G_CDS: -0.20 Total: -1.52 kcal Atomic # 14 Polarization: 6.53 SS G_CDS: -4.14 Total: 2.39 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -20.14 -6.29 -26.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223551186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.128 kcal (2) G-P(sol) polarization free energy of solvation -20.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds