Wall clock time and date at job start Mon Mar 30 2020 01:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35041 * 126.39784 * 2 1 4 4 N 1.30500 * 108.69719 * 179.82955 * 3 2 1 5 5 C 1.34124 * 109.25936 * 0.44507 * 4 3 2 6 6 C 1.50703 * 125.99221 * 179.72879 * 5 4 3 7 7 O 1.42894 * 109.47170 * 179.97438 * 6 5 4 8 8 C 1.42903 * 114.00236 * 179.97438 * 7 6 5 9 9 H 1.09006 * 109.46550 * 30.00052 * 8 7 6 10 10 C 1.50696 * 109.47063 * 270.00535 * 8 7 6 11 11 H 1.08000 * 120.00205 * 124.72772 * 10 8 7 12 12 C 1.37881 * 120.00207 * 304.71709 * 10 8 7 13 13 N 1.31513 * 120.00366 * 192.29588 * 12 10 8 14 14 Si 1.86808 * 119.99612 * 12.29767 * 12 10 8 15 15 H 1.48508 * 109.46849 * 90.01025 * 14 12 10 16 16 H 1.48492 * 109.47005 * 210.00639 * 14 12 10 17 17 H 1.48498 * 109.46844 * 330.01094 * 14 12 10 18 18 C 1.52993 * 109.47113 * 149.99990 * 8 7 6 19 19 N 1.46900 * 109.47050 * 191.11348 * 18 8 7 20 20 C 1.46901 * 109.47056 * 53.74625 * 19 18 8 21 21 C 1.46894 * 109.47493 * 173.74646 * 19 18 8 22 22 C 1.46897 * 109.47408 * 293.75047 * 19 18 8 23 23 C 1.34669 * 108.01932 * 359.72522 * 5 4 3 24 24 H 1.08997 * 109.47171 * 269.68350 * 1 2 3 25 25 H 1.08994 * 109.47022 * 29.68326 * 1 2 3 26 26 H 1.08996 * 109.47130 * 149.68294 * 1 2 3 27 27 H 1.07997 * 125.65094 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.46816 * 300.00100 * 6 5 4 29 29 H 1.09001 * 109.47281 * 59.99532 * 6 5 4 30 30 H 0.96999 * 119.99817 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47313 * 311.11226 * 18 8 7 32 32 H 1.09007 * 109.47268 * 71.11935 * 18 8 7 33 33 H 1.09004 * 109.47132 * 51.97494 * 20 19 18 34 34 H 1.09002 * 109.47149 * 171.96752 * 20 19 18 35 35 H 1.08991 * 109.47446 * 291.97276 * 20 19 18 36 36 H 1.09000 * 109.47346 * 59.99943 * 21 19 18 37 37 H 1.08998 * 109.47965 * 180.02562 * 21 19 18 38 38 H 1.09005 * 109.47578 * 300.00594 * 21 19 18 39 39 H 1.08994 * 109.47368 * 69.49517 * 22 19 18 40 40 H 1.09002 * 109.47172 * 189.49825 * 22 19 18 41 41 H 1.09003 * 109.46919 * 309.49495 * 22 19 18 42 42 H 1.08000 * 126.59088 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6902 0.0037 5 6 3.5460 -0.6505 -0.0037 6 6 4.7890 -1.5026 -0.0084 7 8 4.4202 -2.8831 -0.0154 8 6 5.5313 -3.7817 -0.0208 9 1 6.3738 -3.3208 0.4949 10 6 5.9210 -4.0900 -1.4435 11 1 6.9347 -3.9196 -1.7748 12 6 4.9835 -4.5898 -2.3223 13 7 5.3648 -5.0841 -3.4798 14 14 3.1715 -4.5648 -1.8687 15 1 2.5628 -3.2918 -2.3319 16 1 2.4826 -5.7083 -2.5191 17 1 3.0287 -4.6742 -0.3947 18 6 5.1428 -5.0775 0.6939 19 7 6.3454 -5.8890 0.9243 20 6 7.3522 -5.0836 1.6283 21 6 5.9971 -7.0598 1.7403 22 6 6.8896 -6.3352 -0.3651 23 6 2.2772 -1.1018 -0.0061 24 1 -0.3633 -0.0057 1.0276 25 1 -0.3633 0.8928 -0.5089 26 1 -0.3633 -0.8871 -0.5187 27 1 1.9335 2.1144 -0.0004 28 1 5.3793 -1.2793 -0.8972 29 1 5.3793 -1.2891 0.8828 30 1 4.7051 -5.4354 -4.0981 31 1 4.6765 -4.8394 1.6498 32 1 4.4401 -5.6366 0.0760 33 1 6.9037 -4.6352 2.5149 34 1 8.1848 -5.7213 1.9254 35 1 7.7151 -4.2967 0.9672 36 1 5.2501 -7.6575 1.2180 37 1 6.8894 -7.6618 1.9117 38 1 5.5933 -6.7288 2.6971 39 1 7.3026 -5.4804 -0.9006 40 1 7.6757 -7.0704 -0.1929 41 1 6.0943 -6.7861 -0.9587 42 1 1.9612 -2.1345 -0.0122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223551186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:11 Heat of formation + Delta-G solvation = 130.063859 kcal Electronic energy + Delta-G solvation = -21946.954722 eV Core-core repulsion = 18854.528047 eV Total energy + Delta-G solvation = -3092.426676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.177 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.02824 -42.70282 -38.84025 -35.28175 -34.77224 -32.43813 -30.69119 -29.54706 -29.52075 -28.59924 -27.69064 -26.29606 -24.33645 -22.69635 -22.07552 -21.28764 -19.52815 -18.28257 -17.98060 -17.80818 -17.34603 -16.98855 -16.60936 -16.47072 -15.57661 -15.45594 -15.00382 -14.94101 -14.67369 -14.43464 -13.90561 -13.75796 -13.58057 -13.50747 -13.24431 -13.18352 -13.07072 -13.02638 -12.96952 -12.73266 -12.52909 -12.14157 -12.06850 -11.12103 -10.94810 -10.83700 -10.58958 -10.25253 -9.32705 -8.44357 -6.53618 0.96938 1.06270 1.28174 1.48951 1.53504 1.92417 2.05245 2.28191 2.53006 2.90376 3.09946 3.12971 3.38023 3.83278 3.90097 3.94700 4.02366 4.14089 4.25914 4.30810 4.32888 4.37650 4.40103 4.44824 4.46951 4.58633 4.64389 4.65890 4.72020 4.75165 4.81327 4.82853 4.85778 4.94701 5.25542 5.28221 5.34229 5.66777 5.96333 6.20996 6.37417 6.63198 7.05868 7.22338 8.64899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.468 5.468 3 C 0.184 3.816 4 N -0.530 5.530 5 C -0.028 4.028 6 C 0.166 3.834 7 O -0.396 6.396 8 C 0.157 3.843 9 H 0.086 0.914 10 C -0.548 4.548 11 H 0.064 0.936 12 C 0.057 3.943 13 N -0.911 5.911 14 Si 0.922 3.078 15 H -0.314 1.314 16 H -0.332 1.332 17 H -0.193 1.193 18 C 0.004 3.996 19 N -0.243 5.243 20 C -0.052 4.052 21 C -0.045 4.045 22 C -0.036 4.036 23 C -0.046 4.046 24 H 0.096 0.904 25 H 0.110 0.890 26 H 0.087 0.913 27 H 0.241 0.759 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.264 0.736 31 H 0.146 0.854 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.143 0.857 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.085 0.915 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.439 -6.864 18.063 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.150 5.150 3 C -0.099 4.099 4 N -0.251 5.251 5 C -0.156 4.156 6 C 0.089 3.911 7 O -0.316 6.316 8 C 0.101 3.899 9 H 0.104 0.896 10 C -0.585 4.585 11 H 0.082 0.918 12 C -0.148 4.148 13 N -0.548 5.548 14 Si 0.755 3.245 15 H -0.242 1.242 16 H -0.262 1.262 17 H -0.116 1.116 18 C -0.119 4.119 19 N 0.099 4.901 20 C -0.193 4.193 21 C -0.185 4.185 22 C -0.178 4.178 23 C -0.180 4.180 24 H 0.114 0.886 25 H 0.128 0.872 26 H 0.105 0.895 27 H 0.257 0.743 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.164 0.836 32 H 0.119 0.881 33 H 0.151 0.849 34 H 0.161 0.839 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.104 0.896 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.718 -6.514 17.932 19.156 hybrid contribution -1.689 -0.110 -1.324 2.148 sum 0.029 -6.624 16.609 17.881 Atomic orbital electron populations 1.22371 0.73918 1.06063 1.05206 1.45707 1.09359 1.06355 1.53626 1.25648 0.84701 0.95115 1.04396 1.70005 1.21726 1.11352 1.21994 1.20714 0.94871 0.90747 1.09254 1.20016 0.90722 0.79926 1.00482 1.87644 1.34627 1.14682 1.94637 1.20537 0.87503 0.86869 0.95005 0.89619 1.21426 0.97496 1.43540 0.96060 0.91838 1.25442 1.01599 0.93120 0.94592 1.70028 1.35938 1.38390 1.10432 0.86368 0.81809 0.74572 0.81718 1.24234 1.26245 1.11583 1.24034 0.86871 0.95067 1.05886 1.45555 1.14130 1.15094 1.15364 1.24306 0.94075 0.99974 1.00924 1.24298 1.08085 0.87542 0.98589 1.24332 1.03232 1.06291 0.83895 1.22537 0.90933 0.93211 1.11308 0.88566 0.87188 0.89472 0.74315 0.94013 0.90364 0.92690 0.83648 0.88058 0.84854 0.83927 0.87709 0.87291 0.84156 0.84658 0.85937 0.85391 0.89629 0.80774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.28 11.18 127.77 1.43 1.15 16 2 N -0.47 -2.55 3.15 -552.55 -1.74 -4.30 16 3 C 0.18 1.26 12.56 180.26 2.26 3.53 16 4 N -0.53 -7.51 11.25 -188.32 -2.12 -9.63 16 5 C -0.03 -0.37 7.07 41.39 0.29 -0.08 16 6 C 0.17 1.58 6.36 71.24 0.45 2.03 16 7 O -0.40 -2.65 5.65 -148.98 -0.84 -3.50 16 8 C 0.16 -0.05 2.00 29.84 0.06 0.01 16 9 H 0.09 -0.54 5.41 -2.38 -0.01 -0.55 16 10 C -0.55 -6.62 6.12 25.60 0.16 -6.46 16 11 H 0.06 1.11 7.37 -2.91 -0.02 1.09 16 12 C 0.06 1.13 5.00 84.66 0.42 1.56 16 13 N -0.91 -25.47 13.96 21.45 0.30 -25.17 16 14 Si 0.92 15.71 24.35 68.60 1.67 17.38 16 15 H -0.31 -7.65 7.11 99.48 0.71 -6.95 16 16 H -0.33 -7.14 7.11 99.48 0.71 -6.43 16 17 H -0.19 -1.25 4.95 99.48 0.49 -0.76 16 18 C 0.00 -0.04 3.20 86.30 0.28 0.23 16 19 N -0.24 5.11 0.05 ******* -0.07 5.04 16 20 C -0.05 1.33 7.38 127.69 0.94 2.27 16 21 C -0.05 1.28 7.97 127.69 1.02 2.30 16 22 C -0.04 0.48 6.93 127.69 0.89 1.36 16 23 C -0.05 -0.48 10.89 83.09 0.91 0.42 16 24 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 25 H 0.11 -0.91 8.14 -2.39 -0.02 -0.93 16 26 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.24 -0.52 8.06 -2.91 -0.02 -0.54 16 28 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.31 8.09 -2.39 -0.02 0.29 16 30 H 0.26 7.64 8.31 -92.71 -0.77 6.87 16 31 H 0.15 -2.67 8.06 -2.39 -0.02 -2.69 16 32 H 0.10 -0.66 4.60 -2.38 -0.01 -0.67 16 33 H 0.13 -3.88 8.07 -2.39 -0.02 -3.90 16 34 H 0.14 -4.40 8.03 -2.39 -0.02 -4.42 16 35 H 0.10 -2.12 6.09 -2.39 -0.01 -2.14 16 36 H 0.11 -2.86 8.14 -2.39 -0.02 -2.88 16 37 H 0.14 -4.58 8.01 -2.39 -0.02 -4.60 16 38 H 0.14 -4.36 8.10 -2.38 -0.02 -4.38 16 39 H 0.12 -0.59 4.71 -2.39 -0.01 -0.60 16 40 H 0.13 -2.64 8.00 -2.39 -0.02 -2.66 16 41 H 0.08 -0.55 7.62 -2.39 -0.02 -0.57 16 42 H 0.18 1.53 7.81 -2.91 -0.02 1.51 16 Total: 0.00 -55.39 321.28 7.07 -48.32 By element: Atomic # 1 Polarization: -37.25 SS G_CDS: 0.77 Total: -36.48 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 9.10 Total: 8.33 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: -3.63 Total: -34.06 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: -0.84 Total: -3.50 kcal Atomic # 14 Polarization: 15.71 SS G_CDS: 1.67 Total: 17.38 kcal Total: -55.39 7.07 -48.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223551186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.385 kcal (2) G-P(sol) polarization free energy of solvation -55.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds