Wall clock time and date at job start Mon Mar 30 2020 01:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35667 * 117.00225 * 2 1 4 4 C 1.30184 * 118.01298 * 359.97438 * 3 2 1 5 5 C 1.50079 * 123.97605 * 180.42653 * 4 3 2 6 6 C 1.53021 * 110.14011 * 342.85909 * 5 4 3 7 7 H 1.08997 * 109.63491 * 289.63971 * 6 5 4 8 8 O 1.42906 * 109.63622 * 169.24002 * 6 5 4 9 9 C 1.42892 * 114.00440 * 89.99471 * 8 6 5 10 10 C 1.53003 * 109.47319 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47020 * 179.97438 * 10 9 8 12 12 C 1.52994 * 109.46838 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47119 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.53378 * 108.46551 * 49.54333 * 6 5 4 23 23 C 1.50076 * 118.01217 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47330 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47110 * 300.00515 * 1 2 3 26 26 H 1.09003 * 109.46823 * 60.00096 * 1 2 3 27 27 H 1.08002 * 118.01245 * 0.45083 * 4 3 2 28 28 H 1.08998 * 109.36352 * 222.64883 * 5 4 3 29 29 H 1.09000 * 109.35623 * 103.05775 * 5 4 3 30 30 H 1.09004 * 109.47057 * 60.00074 * 9 8 6 31 31 H 1.09000 * 109.47225 * 300.00594 * 9 8 6 32 32 H 1.08998 * 109.46872 * 60.00433 * 10 9 8 33 33 H 1.09002 * 109.46620 * 299.99963 * 10 9 8 34 34 H 1.08998 * 109.46943 * 60.00478 * 11 10 9 35 35 H 1.08994 * 109.47116 * 300.00090 * 11 10 9 36 36 H 1.09004 * 109.46806 * 60.00265 * 12 11 10 37 37 H 1.09000 * 109.47828 * 300.00570 * 12 11 10 38 38 H 1.09004 * 109.47066 * 60.00422 * 13 12 11 39 39 H 1.08994 * 109.47405 * 300.00252 * 13 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.63828 * 52.04438 * 22 6 5 42 42 H 1.08997 * 109.63386 * 172.65961 * 22 6 5 43 43 H 1.09002 * 109.36033 * 283.08869 * 23 3 2 44 44 H 1.09003 * 109.36068 * 42.80701 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2985 2.2754 -0.0005 5 6 1.8373 3.6761 -0.0098 6 6 3.3102 3.6769 0.4052 7 1 3.3919 3.4405 1.4661 8 8 3.8790 4.9637 0.1547 9 6 3.7716 5.8706 1.2538 10 6 4.4096 7.2087 0.8751 11 6 4.2940 8.1799 2.0517 12 6 4.9325 9.5178 1.6732 13 6 4.8176 10.4888 2.8499 14 6 5.4459 11.8068 2.4769 15 1 5.8831 11.9388 1.4982 16 6 5.4571 12.8461 3.3829 17 7 4.9244 12.6854 4.5745 18 14 6.2290 14.4822 2.9177 19 1 5.5254 15.0436 1.7365 20 1 6.1132 15.4263 4.0582 21 1 7.6626 14.2776 2.5888 22 6 4.0485 2.6170 -0.4219 23 6 3.5455 1.2352 0.0006 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2265 2.1443 0.0066 28 1 1.2651 4.2881 0.6874 29 1 1.7444 4.0922 -1.0130 30 1 4.2864 5.4544 2.1198 31 1 2.7202 6.0253 1.4959 32 1 3.8944 7.6247 0.0092 33 1 5.4610 7.0542 0.6328 34 1 4.8089 7.7642 2.9178 35 1 3.2425 8.3342 2.2935 36 1 4.4180 9.9337 0.8069 37 1 5.9840 9.3632 1.4315 38 1 5.3324 10.0726 3.7160 39 1 3.7662 10.6435 3.0920 40 1 4.9326 13.4165 5.2120 41 1 3.8453 2.7722 -1.4815 42 1 5.1202 2.6892 -0.2369 43 1 3.9105 1.0090 1.0024 44 1 3.9204 0.4871 -0.6979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224374864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:37 Heat of formation + Delta-G solvation = -107.615909 kcal Electronic energy + Delta-G solvation = -19679.762772 eV Core-core repulsion = 16596.506949 eV Total energy + Delta-G solvation = -3083.255823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38420 -38.61330 -36.21409 -34.94276 -32.79500 -31.27305 -30.53840 -29.22280 -27.49069 -26.29154 -23.87381 -23.15176 -22.04564 -20.93262 -20.00053 -18.86770 -17.68153 -16.74810 -16.17768 -16.11423 -15.97526 -15.46348 -14.80594 -14.43532 -14.37089 -14.06789 -13.42329 -13.20590 -12.86648 -12.72580 -12.54645 -12.35342 -12.12280 -11.95298 -11.69989 -11.50737 -11.42003 -11.05682 -11.03194 -10.84123 -10.74813 -10.45665 -10.38246 -10.34145 -9.60223 -9.49051 -9.22266 -8.98573 -8.62377 -8.30390 -5.95796 -3.97806 1.95344 2.94485 3.36003 3.39899 3.42754 3.53980 4.34588 4.49342 4.55821 4.74033 4.74676 4.80191 4.88198 5.00176 5.09847 5.11317 5.17473 5.24812 5.33049 5.39616 5.39794 5.47724 5.54543 5.61206 5.73067 5.78428 5.82437 5.91614 5.96419 6.12996 6.30871 6.33264 6.45419 6.55427 6.85580 6.99187 7.13205 7.21457 7.24393 7.73006 7.89028 8.05293 8.48563 9.09498 9.65812 11.15549 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.058336 B = 0.002168 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.863415 B =12913.137551 C =13131.053673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.331 6.331 3 C 0.080 3.920 4 C -0.280 4.280 5 C -0.090 4.090 6 C 0.087 3.913 7 H 0.063 0.937 8 O -0.381 6.381 9 C 0.062 3.938 10 C -0.116 4.116 11 C -0.116 4.116 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.111 4.111 23 C -0.066 4.066 24 H 0.096 0.904 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.260 0.740 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.368 -26.109 -9.136 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.245 6.245 3 C 0.035 3.965 4 C -0.300 4.300 5 C -0.128 4.128 6 C 0.029 3.971 7 H 0.081 0.919 8 O -0.301 6.301 9 C -0.014 4.014 10 C -0.154 4.154 11 C -0.153 4.153 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.149 4.149 23 C -0.103 4.103 24 H 0.114 0.886 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.234 -26.159 -9.138 28.638 hybrid contribution -0.223 1.070 0.143 1.102 sum -7.458 -25.089 -8.996 27.677 Atomic orbital electron populations 1.22989 0.78966 1.03475 1.01285 1.85980 1.20982 1.28720 1.88827 1.20458 0.93998 0.84087 0.97930 1.22077 0.99789 0.94397 1.13706 1.20615 0.95747 0.93802 1.02602 1.22124 0.92166 0.84071 0.98771 0.91928 1.87913 1.79966 1.22500 1.39686 1.22685 0.99681 0.90399 0.88681 1.21596 1.01260 0.92664 0.99864 1.21586 1.01166 0.96030 0.96560 1.21613 0.98943 0.93666 1.00498 1.19108 0.97027 0.92970 0.92628 1.21266 1.37409 0.97321 0.99839 0.92772 1.25043 0.95630 0.98867 0.95068 1.69961 1.45391 1.32450 1.05845 0.86657 0.79847 0.83604 0.77873 1.20268 1.21325 1.20264 1.21624 1.00705 0.91615 1.00939 1.20215 0.88280 0.98330 1.03493 0.88570 0.92771 0.92780 0.86913 0.91221 0.90353 0.93438 0.93506 0.91485 0.91458 0.92451 0.92466 0.93425 0.93407 0.96705 0.96718 0.93021 0.90530 0.89802 0.89568 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.73 101.05 0.98 1.15 16 2 O -0.33 -3.05 10.48 -18.70 -0.20 -3.25 16 3 C 0.08 0.73 6.66 -36.10 -0.24 0.49 16 4 C -0.28 -2.60 8.90 -36.10 -0.32 -2.92 16 5 C -0.09 -0.90 5.74 -28.17 -0.16 -1.06 16 6 C 0.09 0.90 2.66 -26.52 -0.07 0.83 16 7 H 0.06 0.63 7.79 -51.93 -0.40 0.22 16 8 O -0.38 -4.91 10.01 -35.23 -0.35 -5.26 16 9 C 0.06 0.79 5.76 37.16 0.21 1.01 16 10 C -0.12 -1.70 5.58 -26.73 -0.15 -1.85 16 11 C -0.12 -1.98 5.21 -26.73 -0.14 -2.12 16 12 C -0.11 -2.31 5.15 -26.74 -0.14 -2.45 16 13 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 14 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 18 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.11 -0.96 5.67 -26.54 -0.15 -1.11 16 23 C -0.07 -0.51 6.04 -28.19 -0.17 -0.68 16 24 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.30 7.50 -51.93 -0.39 -0.09 16 26 H 0.05 0.30 7.52 -51.93 -0.39 -0.09 16 27 H 0.11 0.93 5.54 -52.49 -0.29 0.64 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 354.02 15.07 5.33 5.33 Total: -1.00 -31.67 354.02 -8.59 -40.26 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -8.20 Total: -5.14 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -0.89 Total: -22.24 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.72 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.55 Total: -8.51 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.67 -8.59 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224374864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.351 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds