Wall clock time and date at job start Mon Mar 30 2020 01:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35667 * 117.00225 * 2 1 4 4 C 1.30184 * 118.01298 * 359.97438 * 3 2 1 5 5 C 1.50079 * 123.97605 * 180.42653 * 4 3 2 6 6 C 1.53021 * 110.14011 * 342.85909 * 5 4 3 7 7 H 1.08997 * 109.63491 * 289.63971 * 6 5 4 8 8 O 1.42906 * 109.63622 * 169.24002 * 6 5 4 9 9 C 1.42892 * 114.00440 * 89.99471 * 8 6 5 10 10 C 1.53003 * 109.47319 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47020 * 179.97438 * 10 9 8 12 12 C 1.52994 * 109.46838 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47119 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.53378 * 108.46551 * 49.54333 * 6 5 4 23 23 C 1.50076 * 118.01217 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47330 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47110 * 300.00515 * 1 2 3 26 26 H 1.09003 * 109.46823 * 60.00096 * 1 2 3 27 27 H 1.08002 * 118.01245 * 0.45083 * 4 3 2 28 28 H 1.08998 * 109.36352 * 222.64883 * 5 4 3 29 29 H 1.09000 * 109.35623 * 103.05775 * 5 4 3 30 30 H 1.09004 * 109.47057 * 60.00074 * 9 8 6 31 31 H 1.09000 * 109.47225 * 300.00594 * 9 8 6 32 32 H 1.08998 * 109.46872 * 60.00433 * 10 9 8 33 33 H 1.09002 * 109.46620 * 299.99963 * 10 9 8 34 34 H 1.08998 * 109.46943 * 60.00478 * 11 10 9 35 35 H 1.08994 * 109.47116 * 300.00090 * 11 10 9 36 36 H 1.09004 * 109.46806 * 60.00265 * 12 11 10 37 37 H 1.09000 * 109.47828 * 300.00570 * 12 11 10 38 38 H 1.09004 * 109.47066 * 60.00422 * 13 12 11 39 39 H 1.08994 * 109.47405 * 300.00252 * 13 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.63828 * 52.04438 * 22 6 5 42 42 H 1.08997 * 109.63386 * 172.65961 * 22 6 5 43 43 H 1.09002 * 109.36033 * 283.08869 * 23 3 2 44 44 H 1.09003 * 109.36068 * 42.80701 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2985 2.2754 -0.0005 5 6 1.8373 3.6761 -0.0098 6 6 3.3102 3.6769 0.4052 7 1 3.3919 3.4405 1.4661 8 8 3.8790 4.9637 0.1547 9 6 3.7716 5.8706 1.2538 10 6 4.4096 7.2087 0.8751 11 6 4.2940 8.1799 2.0517 12 6 4.9325 9.5178 1.6732 13 6 4.8176 10.4888 2.8499 14 6 5.4459 11.8068 2.4769 15 1 5.8831 11.9388 1.4982 16 6 5.4571 12.8461 3.3829 17 7 4.9244 12.6854 4.5745 18 14 6.2290 14.4822 2.9177 19 1 5.5254 15.0436 1.7365 20 1 6.1132 15.4263 4.0582 21 1 7.6626 14.2776 2.5888 22 6 4.0485 2.6170 -0.4219 23 6 3.5455 1.2352 0.0006 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2265 2.1443 0.0066 28 1 1.2651 4.2881 0.6874 29 1 1.7444 4.0922 -1.0130 30 1 4.2864 5.4544 2.1198 31 1 2.7202 6.0253 1.4959 32 1 3.8944 7.6247 0.0092 33 1 5.4610 7.0542 0.6328 34 1 4.8089 7.7642 2.9178 35 1 3.2425 8.3342 2.2935 36 1 4.4180 9.9337 0.8069 37 1 5.9840 9.3632 1.4315 38 1 5.3324 10.0726 3.7160 39 1 3.7662 10.6435 3.0920 40 1 4.9326 13.4165 5.2120 41 1 3.8453 2.7722 -1.4815 42 1 5.1202 2.6892 -0.2369 43 1 3.9105 1.0090 1.0024 44 1 3.9204 0.4871 -0.6979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224374864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:37 Heat of formation + Delta-G solvation = -124.853585 kcal Electronic energy + Delta-G solvation = -19680.510254 eV Core-core repulsion = 16596.506949 eV Total energy + Delta-G solvation = -3084.003305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05841 -39.45803 -37.30270 -36.30750 -34.73281 -32.12778 -31.94689 -30.11405 -28.24428 -27.80576 -25.23176 -24.22700 -22.82591 -22.32750 -21.69017 -19.53487 -18.46912 -18.32800 -17.55887 -17.04768 -16.64611 -16.52352 -16.42478 -15.61402 -15.50688 -14.90090 -14.55086 -14.33658 -14.08426 -13.90487 -13.60799 -13.40328 -13.23446 -13.13227 -12.90878 -12.75995 -12.63001 -12.38604 -12.25345 -12.11640 -11.96060 -11.81250 -11.60255 -11.51843 -11.32272 -11.30348 -10.96466 -10.54427 -10.38775 -9.30628 -8.19564 -6.30838 1.27171 1.39737 1.43225 1.51175 2.36488 2.41315 2.64618 3.12911 3.67957 3.82037 3.99086 4.04405 4.17022 4.18105 4.25036 4.31128 4.35490 4.36412 4.42873 4.45087 4.53114 4.63830 4.70232 4.74319 4.78108 4.84583 4.89568 4.90391 4.99247 5.07744 5.09468 5.21061 5.28486 5.31444 5.32609 5.40846 5.56249 5.63125 5.79183 5.87656 6.26663 6.31706 6.51480 6.86359 7.38168 8.92003 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.058336 B = 0.002168 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.863415 B =12913.137551 C =13131.053673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.346 6.346 3 C 0.077 3.923 4 C -0.292 4.292 5 C -0.087 4.087 6 C 0.081 3.919 7 H 0.067 0.933 8 O -0.395 6.395 9 C 0.066 3.934 10 C -0.107 4.107 11 C -0.107 4.107 12 C -0.100 4.100 13 C 0.021 3.979 14 C -0.546 4.546 15 H 0.059 0.941 16 C -0.004 4.004 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.267 1.267 22 C -0.107 4.107 23 C -0.065 4.065 24 H 0.116 0.884 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.050 0.950 38 H -0.009 1.009 39 H -0.010 1.010 40 H 0.264 0.736 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.044 -26.791 -10.004 29.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.260 6.260 3 C 0.032 3.968 4 C -0.312 4.312 5 C -0.125 4.125 6 C 0.024 3.976 7 H 0.085 0.915 8 O -0.315 6.315 9 C -0.011 4.011 10 C -0.145 4.145 11 C -0.145 4.145 12 C -0.137 4.137 13 C -0.016 4.016 14 C -0.584 4.584 15 H 0.077 0.923 16 C -0.201 4.201 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.144 4.144 23 C -0.102 4.102 24 H 0.134 0.866 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.138 0.862 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.010 0.990 39 H 0.009 0.991 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.916 -26.860 -10.020 29.490 hybrid contribution -0.372 1.228 0.429 1.353 sum -7.288 -25.631 -9.591 28.321 Atomic orbital electron populations 1.23210 0.77526 1.04998 1.01656 1.85965 1.22584 1.28721 1.88718 1.20700 0.94727 0.84141 0.97207 1.22104 1.00325 0.94044 1.14680 1.20555 0.95610 0.94278 1.02030 1.22304 0.92505 0.83359 0.99447 0.91479 1.87879 1.80367 1.23485 1.39783 1.22562 0.99897 0.89664 0.88945 1.21428 1.01582 0.93068 0.98426 1.21434 1.00713 0.94559 0.97750 1.21449 0.99649 0.94485 0.98154 1.19046 0.94859 0.93760 0.93931 1.21731 1.37803 0.98649 1.00247 0.92267 1.26031 0.96031 1.03161 0.94900 1.70096 1.46468 1.33853 1.06987 0.85481 0.79201 0.78362 0.77880 1.19172 1.20732 1.19143 1.21599 1.00926 0.91534 1.00364 1.20257 0.87543 0.97980 1.04410 0.86574 0.92420 0.92354 0.86231 0.91500 0.91155 0.92573 0.92991 0.91592 0.91347 0.92274 0.92422 0.93221 0.93110 0.99044 0.99122 0.92770 0.90955 0.89123 0.88579 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.73 113.37 1.10 1.32 16 2 O -0.35 -5.88 10.48 -89.84 -0.94 -6.82 16 3 C 0.08 1.32 6.66 26.30 0.18 1.49 16 4 C -0.29 -5.14 8.90 26.30 0.23 -4.91 16 5 C -0.09 -1.67 5.74 29.66 0.17 -1.50 16 6 C 0.08 1.59 2.66 30.73 0.08 1.67 16 7 H 0.07 1.25 7.79 -2.39 -0.02 1.23 16 8 O -0.40 -9.69 10.01 -148.98 -1.49 -11.18 16 9 C 0.07 1.59 5.76 71.98 0.41 2.01 16 10 C -0.11 -3.00 5.58 30.60 0.17 -2.83 16 11 C -0.11 -3.60 5.21 30.59 0.16 -3.44 16 12 C -0.10 -4.20 5.15 30.59 0.16 -4.04 16 13 C 0.02 1.15 4.97 29.85 0.15 1.29 16 14 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 17 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 18 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 C -0.11 -1.69 5.67 30.72 0.17 -1.52 16 23 C -0.07 -0.90 6.04 29.65 0.18 -0.72 16 24 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.57 7.50 -2.39 -0.02 0.55 16 26 H 0.06 0.57 7.52 -2.39 -0.02 0.55 16 27 H 0.12 1.87 5.54 -2.91 -0.02 1.85 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.27 8.09 -2.38 -0.02 1.25 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 36 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 39 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 41 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 42 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -67.29 354.02 4.67 -62.62 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.93 Total: 8.67 kcal Atomic # 6 Polarization: -46.57 SS G_CDS: 3.86 Total: -42.71 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.28 Total: -57.62 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -2.43 Total: -18.00 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -67.29 4.67 -62.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224374864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.238 kcal (2) G-P(sol) polarization free energy of solvation -67.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds