Wall clock time and date at job start Mon Mar 30 2020 00:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.48137 * 2 1 4 4 C 1.53231 * 109.48071 * 239.95975 * 2 1 3 5 5 C 1.51274 * 108.53434 * 185.39391 * 4 2 1 6 6 O 1.20759 * 120.84483 * 231.32023 * 5 4 2 7 7 C 1.51265 * 118.29696 * 51.35014 * 5 4 2 8 8 C 1.53231 * 108.53840 * 308.64384 * 7 5 4 9 9 C 1.52954 * 109.48006 * 120.02936 * 2 1 3 10 10 H 1.08996 * 109.41864 * 63.54484 * 9 2 1 11 11 O 1.42904 * 109.41714 * 303.67927 * 9 2 1 12 12 C 1.42895 * 114.00490 * 150.00139 * 11 9 2 13 13 C 1.52992 * 109.47606 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47482 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46828 * 90.00241 * 20 18 16 22 22 H 1.48494 * 109.47178 * 209.99936 * 20 18 16 23 23 H 1.48500 * 109.47075 * 330.00183 * 20 18 16 24 24 H 1.09004 * 109.46847 * 299.97519 * 1 2 3 25 25 H 1.08996 * 109.46844 * 59.96955 * 1 2 3 26 26 H 1.08992 * 109.47323 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46808 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47533 * 300.02612 * 3 2 1 29 29 H 1.08995 * 109.47132 * 60.03297 * 3 2 1 30 30 H 1.09002 * 109.62671 * 305.10718 * 4 2 1 31 31 H 1.08994 * 109.62517 * 65.48660 * 4 2 1 32 32 H 1.08998 * 109.62997 * 68.36553 * 7 5 4 33 33 H 1.09000 * 109.62295 * 188.74442 * 7 5 4 34 34 H 1.08997 * 109.48817 * 294.65531 * 8 7 5 35 35 H 1.08998 * 109.48379 * 174.60791 * 8 7 5 36 36 H 1.09002 * 109.47063 * 60.00241 * 12 11 9 37 37 H 1.09001 * 109.46798 * 300.00508 * 12 11 9 38 38 H 1.09002 * 109.47103 * 59.99788 * 13 12 11 39 39 H 1.08998 * 109.46862 * 300.00600 * 13 12 11 40 40 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 41 41 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 42 42 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 43 43 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 44 44 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0411 -0.7232 -1.2505 5 6 3.5476 -0.8284 -1.1633 6 8 4.2475 -0.4687 -2.0792 7 6 4.1547 -1.3965 0.1004 8 6 3.5671 -0.6488 1.3020 9 6 2.0401 -0.7216 1.2484 10 1 1.7292 -1.7658 1.2159 11 8 1.4939 -0.0995 2.4132 12 6 1.3118 -0.9894 3.5163 13 6 0.7246 -0.2198 4.7010 14 6 0.5301 -1.1725 5.8823 15 6 -0.0577 -0.4029 7.0668 16 6 -0.2486 -1.3413 8.2305 17 1 0.0218 -2.3824 8.1346 18 6 -0.7686 -0.8705 9.4175 19 7 -1.0975 0.3975 9.5344 20 14 -1.0059 -2.0338 10.8598 21 1 0.2242 -2.0480 11.6917 22 1 -2.1542 -1.5750 11.6819 23 1 -1.2761 -3.4029 10.3521 24 1 -0.3633 0.5135 0.8902 25 1 -0.3633 0.5143 -0.8897 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1303 1.4421 -0.0005 28 1 1.6767 1.9565 -0.8897 29 1 1.6776 1.9561 0.8902 30 1 1.6065 -1.7216 -1.2993 31 1 1.7616 -0.1584 -2.1399 32 1 3.9158 -2.4572 0.1767 33 1 5.2366 -1.2656 0.0777 34 1 3.8826 0.3940 1.2711 35 1 3.9208 -1.1087 2.2247 36 1 2.2733 -1.4168 3.8009 37 1 0.6294 -1.7893 3.2289 38 1 -0.2370 0.2073 4.4162 39 1 1.4066 0.5803 4.9884 40 1 1.4919 -1.5993 6.1670 41 1 -0.1518 -1.9729 5.5950 42 1 0.6239 0.3977 7.3542 43 1 -1.0194 0.0235 6.7818 44 1 -1.4629 0.7287 10.3696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224689702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:47 Heat of formation + Delta-G solvation = -127.012369 kcal Electronic energy + Delta-G solvation = -20713.634496 eV Core-core repulsion = 17629.537579 eV Total energy + Delta-G solvation = -3084.096917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76641 -38.62707 -36.42794 -34.43988 -33.21528 -32.28773 -29.31336 -28.39988 -27.48243 -26.56049 -24.72632 -22.75092 -21.70236 -20.60982 -20.07925 -18.68338 -16.74993 -16.28963 -16.04613 -15.97070 -15.73303 -15.32425 -14.77634 -14.48450 -14.06755 -13.70477 -13.64420 -13.30560 -12.76796 -12.64597 -12.39854 -12.34976 -12.07344 -11.94318 -11.79251 -11.74234 -11.34443 -11.25329 -10.97599 -10.94114 -10.66965 -10.61622 -10.48232 -10.40056 -9.80504 -9.68132 -9.36891 -9.32075 -9.05081 -8.34376 -5.99337 -4.01882 1.62035 3.31682 3.37902 3.40941 3.55845 3.77563 4.25110 4.30959 4.46095 4.53347 4.69520 4.79416 4.94745 4.98122 5.00245 5.17906 5.29443 5.33254 5.36554 5.44586 5.45378 5.54194 5.60259 5.61699 5.72005 5.73407 5.74920 5.86254 5.96965 6.08959 6.10056 6.16937 6.21339 6.46125 6.76747 6.90546 7.08704 7.15384 7.34068 7.68819 7.83725 8.01217 8.43334 9.05519 9.62110 11.12015 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042319 B = 0.002858 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.479185 B = 9795.121704 C =10072.157997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.053 4.053 3 C -0.145 4.145 4 C -0.161 4.161 5 C 0.364 3.636 6 O -0.460 6.460 7 C -0.168 4.168 8 C -0.141 4.141 9 C 0.096 3.904 10 H 0.064 0.936 11 O -0.373 6.373 12 C 0.062 3.938 13 C -0.116 4.116 14 C -0.107 4.107 15 C 0.021 3.979 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.744 -2.770 -21.394 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.053 4.053 3 C -0.202 4.202 4 C -0.199 4.199 5 C 0.239 3.761 6 O -0.333 6.333 7 C -0.206 4.206 8 C -0.179 4.179 9 C 0.037 3.963 10 H 0.082 0.918 11 O -0.292 6.292 12 C -0.014 4.014 13 C -0.153 4.153 14 C -0.145 4.145 15 C -0.016 4.016 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.035 0.965 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.988 -2.253 -21.743 22.949 hybrid contribution -0.101 -0.961 0.983 1.378 sum 6.887 -3.214 -20.760 22.107 Atomic orbital electron populations 1.21806 0.92894 1.02111 1.02817 1.20552 0.96991 0.96054 0.91707 1.21945 1.00671 0.94776 1.02785 1.22448 0.94204 1.03258 0.99952 1.24896 0.91603 0.72664 0.86905 1.90411 1.65395 1.37789 1.39708 1.22283 1.02212 1.01856 0.94253 1.22104 0.96195 1.02088 0.97509 1.22035 0.91797 0.96356 0.86094 0.91842 1.87936 1.83512 1.36490 1.21303 1.22751 0.99093 0.92730 0.86817 1.21627 1.01049 0.99342 0.93314 1.21575 1.00225 0.97744 0.94979 1.19086 0.95974 0.95362 0.91147 1.21273 1.41832 0.95629 0.97230 0.92741 1.25033 0.95624 0.95084 0.98770 1.69965 1.43716 1.13626 1.26179 0.86606 0.77722 0.81171 0.82569 1.20678 1.21219 1.19900 0.90782 0.92563 0.92684 0.92813 0.92586 0.90795 0.88202 0.88770 0.88278 0.89039 0.90084 0.90187 0.93684 0.93621 0.91713 0.91727 0.93386 0.93380 0.96567 0.96548 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.29 37.16 0.31 -0.88 16 2 C -0.05 -0.46 0.60 -154.41 -0.09 -0.55 16 3 C -0.14 -1.35 7.75 37.16 0.29 -1.06 16 4 C -0.16 -1.22 4.93 -27.48 -0.14 -1.35 16 5 C 0.36 3.37 5.75 -28.48 -0.16 3.21 16 6 O -0.46 -5.84 17.89 6.00 0.11 -5.73 16 7 C -0.17 -1.27 6.17 -27.49 -0.17 -1.44 16 8 C -0.14 -1.23 5.28 -26.63 -0.14 -1.37 16 9 C 0.10 0.91 1.66 -26.77 -0.04 0.87 16 10 H 0.06 0.54 7.78 -51.93 -0.40 0.14 16 11 O -0.37 -4.69 8.63 -35.23 -0.30 -5.00 16 12 C 0.06 0.83 5.74 37.15 0.21 1.04 16 13 C -0.12 -1.94 5.58 -26.74 -0.15 -2.09 16 14 C -0.11 -2.15 5.15 -26.73 -0.14 -2.29 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 20 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 24 H 0.07 0.76 7.59 -51.93 -0.39 0.37 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.51 5.61 -51.93 -0.29 0.22 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.78 7.78 -51.93 -0.40 0.37 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.76 6.20 -51.93 -0.32 0.44 16 35 H 0.08 0.69 7.77 -51.93 -0.40 0.29 16 36 H 0.04 0.56 7.77 -51.93 -0.40 0.16 16 37 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 347.59 15.07 5.24 5.24 Total: -1.00 -31.44 347.59 -8.10 -39.53 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -8.08 Total: -5.23 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -0.77 Total: -19.09 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.20 Total: -10.73 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.44 -8.10 -39.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.478 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds