Wall clock time and date at job start Mon Mar 30 2020 00:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.48137 * 2 1 4 4 C 1.53231 * 109.48071 * 239.95975 * 2 1 3 5 5 C 1.51274 * 108.53434 * 185.39391 * 4 2 1 6 6 O 1.20759 * 120.84483 * 231.32023 * 5 4 2 7 7 C 1.51265 * 118.29696 * 51.35014 * 5 4 2 8 8 C 1.53231 * 108.53840 * 308.64384 * 7 5 4 9 9 C 1.52954 * 109.48006 * 120.02936 * 2 1 3 10 10 H 1.08996 * 109.41864 * 63.54484 * 9 2 1 11 11 O 1.42904 * 109.41714 * 303.67927 * 9 2 1 12 12 C 1.42895 * 114.00490 * 150.00139 * 11 9 2 13 13 C 1.52992 * 109.47606 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47482 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46828 * 90.00241 * 20 18 16 22 22 H 1.48494 * 109.47178 * 209.99936 * 20 18 16 23 23 H 1.48500 * 109.47075 * 330.00183 * 20 18 16 24 24 H 1.09004 * 109.46847 * 299.97519 * 1 2 3 25 25 H 1.08996 * 109.46844 * 59.96955 * 1 2 3 26 26 H 1.08992 * 109.47323 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46808 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47533 * 300.02612 * 3 2 1 29 29 H 1.08995 * 109.47132 * 60.03297 * 3 2 1 30 30 H 1.09002 * 109.62671 * 305.10718 * 4 2 1 31 31 H 1.08994 * 109.62517 * 65.48660 * 4 2 1 32 32 H 1.08998 * 109.62997 * 68.36553 * 7 5 4 33 33 H 1.09000 * 109.62295 * 188.74442 * 7 5 4 34 34 H 1.08997 * 109.48817 * 294.65531 * 8 7 5 35 35 H 1.08998 * 109.48379 * 174.60791 * 8 7 5 36 36 H 1.09002 * 109.47063 * 60.00241 * 12 11 9 37 37 H 1.09001 * 109.46798 * 300.00508 * 12 11 9 38 38 H 1.09002 * 109.47103 * 59.99788 * 13 12 11 39 39 H 1.08998 * 109.46862 * 300.00600 * 13 12 11 40 40 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 41 41 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 42 42 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 43 43 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 44 44 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0411 -0.7232 -1.2505 5 6 3.5476 -0.8284 -1.1633 6 8 4.2475 -0.4687 -2.0792 7 6 4.1547 -1.3965 0.1004 8 6 3.5671 -0.6488 1.3020 9 6 2.0401 -0.7216 1.2484 10 1 1.7292 -1.7658 1.2159 11 8 1.4939 -0.0995 2.4132 12 6 1.3118 -0.9894 3.5163 13 6 0.7246 -0.2198 4.7010 14 6 0.5301 -1.1725 5.8823 15 6 -0.0577 -0.4029 7.0668 16 6 -0.2486 -1.3413 8.2305 17 1 0.0218 -2.3824 8.1346 18 6 -0.7686 -0.8705 9.4175 19 7 -1.0975 0.3975 9.5344 20 14 -1.0059 -2.0338 10.8598 21 1 0.2242 -2.0480 11.6917 22 1 -2.1542 -1.5750 11.6819 23 1 -1.2761 -3.4029 10.3521 24 1 -0.3633 0.5135 0.8902 25 1 -0.3633 0.5143 -0.8897 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1303 1.4421 -0.0005 28 1 1.6767 1.9565 -0.8897 29 1 1.6776 1.9561 0.8902 30 1 1.6065 -1.7216 -1.2993 31 1 1.7616 -0.1584 -2.1399 32 1 3.9158 -2.4572 0.1767 33 1 5.2366 -1.2656 0.0777 34 1 3.8826 0.3940 1.2711 35 1 3.9208 -1.1087 2.2247 36 1 2.2733 -1.4168 3.8009 37 1 0.6294 -1.7893 3.2289 38 1 -0.2370 0.2073 4.4162 39 1 1.4066 0.5803 4.9884 40 1 1.4919 -1.5993 6.1670 41 1 -0.1518 -1.9729 5.5950 42 1 0.6239 0.3977 7.3542 43 1 -1.0194 0.0235 6.7818 44 1 -1.4629 0.7287 10.3696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224689702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:46 Heat of formation + Delta-G solvation = -144.194256 kcal Electronic energy + Delta-G solvation = -20714.379558 eV Core-core repulsion = 17629.537579 eV Total energy + Delta-G solvation = -3084.841979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50762 -39.49362 -37.44238 -36.09359 -34.23418 -33.86266 -30.67984 -29.45998 -28.19994 -27.40547 -26.39476 -23.70524 -23.06273 -21.81204 -21.25148 -19.41406 -18.41213 -17.60153 -16.96964 -16.90557 -16.51818 -16.47128 -16.07277 -15.79253 -15.07829 -14.72097 -14.45062 -14.37850 -14.32440 -13.66759 -13.49570 -13.37620 -13.21058 -12.96512 -12.89302 -12.72456 -12.59411 -12.46045 -12.32461 -12.27926 -12.03998 -11.75678 -11.69167 -11.38541 -11.29554 -11.26949 -11.02156 -10.58857 -10.54270 -10.21246 -8.18829 -6.30339 0.90913 1.41101 1.42619 1.53730 2.41609 2.68788 3.10971 3.14291 3.56737 3.63253 3.84840 4.01035 4.12312 4.16938 4.22985 4.26778 4.32753 4.35455 4.51309 4.55210 4.67607 4.70270 4.76088 4.80407 4.86378 4.92279 4.93104 4.95361 5.05165 5.07720 5.15773 5.22054 5.28206 5.29705 5.34833 5.42406 5.48050 5.55968 5.78535 5.88093 6.26087 6.39307 6.46998 6.87780 7.39225 8.93202 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042319 B = 0.002858 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.479185 B = 9795.121704 C =10072.157997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 C -0.144 4.144 4 C -0.155 4.155 5 C 0.366 3.634 6 O -0.500 6.500 7 C -0.163 4.163 8 C -0.138 4.138 9 C 0.090 3.910 10 H 0.084 0.916 11 O -0.390 6.390 12 C 0.072 3.928 13 C -0.109 4.109 14 C -0.094 4.094 15 C 0.022 3.978 16 C -0.543 4.543 17 H 0.063 0.937 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.261 1.261 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.057 0.943 42 H -0.012 1.012 43 H -0.011 1.011 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.890 -5.131 -21.960 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.050 4.050 3 C -0.202 4.202 4 C -0.193 4.193 5 C 0.244 3.756 6 O -0.376 6.376 7 C -0.200 4.200 8 C -0.176 4.176 9 C 0.032 3.968 10 H 0.102 0.898 11 O -0.309 6.309 12 C -0.004 4.004 13 C -0.147 4.147 14 C -0.132 4.132 15 C -0.016 4.016 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.185 1.185 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.145 0.855 31 H 0.114 0.886 32 H 0.144 0.856 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.006 0.994 43 H 0.008 0.992 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.136 -4.624 -22.317 23.882 hybrid contribution -0.155 -0.155 1.142 1.163 sum 6.981 -4.779 -21.175 22.803 Atomic orbital electron populations 1.21780 0.92638 1.02744 1.02266 1.20523 0.97110 0.95384 0.91942 1.21935 1.00312 0.95648 1.02268 1.22439 0.92993 1.04631 0.99206 1.25305 0.92299 0.71234 0.86719 1.90408 1.66323 1.39674 1.41234 1.22280 1.02046 1.03067 0.92649 1.22050 0.95733 1.01582 0.98210 1.22264 0.92129 0.97328 0.85056 0.89827 1.87912 1.83977 1.37026 1.21996 1.22511 0.99787 0.92195 0.85912 1.21439 1.00697 0.98673 0.93886 1.21349 1.00226 0.97722 0.93881 1.19026 0.94328 0.94956 0.93246 1.21753 1.41757 0.96378 0.98250 0.91883 1.26031 0.95170 0.96830 1.02094 1.70107 1.44579 1.15768 1.27168 0.85432 0.77840 0.79159 0.78529 1.19784 1.20871 1.18476 0.92897 0.91590 0.91440 0.93336 0.91952 0.92452 0.85517 0.88595 0.85622 0.89074 0.91430 0.89777 0.92391 0.92132 0.92662 0.92884 0.92559 0.92458 0.99351 0.99233 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.29 71.98 0.60 -1.49 16 2 C -0.05 -0.76 0.60 -52.12 -0.03 -0.79 16 3 C -0.14 -2.64 7.75 71.98 0.56 -2.08 16 4 C -0.16 -1.96 4.93 30.11 0.15 -1.81 16 5 C 0.37 6.13 5.75 29.46 0.17 6.30 16 6 O -0.50 -12.32 17.89 -1.45 -0.03 -12.35 16 7 C -0.16 -2.08 6.17 30.10 0.19 -1.89 16 8 C -0.14 -2.14 5.28 30.66 0.16 -1.97 16 9 C 0.09 1.50 1.66 30.57 0.05 1.55 16 10 H 0.08 1.10 7.78 -2.39 -0.02 1.08 16 11 O -0.39 -9.24 8.63 -148.98 -1.29 -10.53 16 12 C 0.07 1.78 5.74 71.98 0.41 2.19 16 13 C -0.11 -3.62 5.58 30.59 0.17 -3.45 16 14 C -0.09 -3.72 5.15 30.59 0.16 -3.57 16 15 C 0.02 1.14 4.97 29.85 0.15 1.29 16 16 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 17 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 18 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 19 N -0.94 -57.59 13.29 21.45 0.28 -57.31 16 20 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 H 0.05 1.04 7.59 -2.39 -0.02 1.03 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.92 5.61 -2.39 -0.01 0.91 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.23 7.78 -2.39 -0.02 1.21 16 30 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.23 6.20 -2.39 -0.01 1.21 16 35 H 0.08 1.25 7.77 -2.39 -0.02 1.24 16 36 H 0.06 1.29 7.77 -2.39 -0.02 1.27 16 37 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 42 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 43 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -68.80 347.59 5.36 -63.44 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.94 Total: 6.82 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 3.43 Total: -36.20 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.28 Total: -57.31 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -1.31 Total: -22.88 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -68.80 5.36 -63.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.753 kcal (2) G-P(sol) polarization free energy of solvation -68.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds