Wall clock time and date at job start Mon Mar 30 2020 00:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.49439 * 2 1 4 4 C 1.53234 * 109.48356 * 239.96781 * 2 1 3 5 5 C 1.51265 * 108.53365 * 294.64832 * 4 2 1 6 6 O 1.20762 * 120.84943 * 128.63286 * 5 4 2 7 7 C 1.51268 * 118.30631 * 308.64988 * 5 4 2 8 8 C 1.53233 * 108.53312 * 51.34803 * 7 5 4 9 9 C 1.52957 * 109.48375 * 120.03457 * 2 1 3 10 10 H 1.09000 * 109.35658 * 176.44853 * 9 2 1 11 11 O 1.42898 * 109.41417 * 296.27689 * 9 2 1 12 12 C 1.42896 * 113.99963 * 210.34881 * 11 9 2 13 13 C 1.53006 * 109.47265 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.46997 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.46623 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46866 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99834 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47325 * 59.99531 * 20 18 16 22 22 H 1.48496 * 109.47425 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47183 * 299.99726 * 20 18 16 24 24 H 1.09000 * 109.47223 * 299.96563 * 1 2 3 25 25 H 1.09008 * 109.47175 * 59.96223 * 1 2 3 26 26 H 1.08997 * 109.47314 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46587 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46895 * 300.03227 * 3 2 1 29 29 H 1.08997 * 109.46721 * 60.03796 * 3 2 1 30 30 H 1.08999 * 109.62536 * 174.93660 * 4 2 1 31 31 H 1.08998 * 109.78429 * 54.45229 * 4 2 1 32 32 H 1.09002 * 109.62498 * 291.64236 * 7 5 4 33 33 H 1.08997 * 109.63267 * 171.06364 * 7 5 4 34 34 H 1.09005 * 109.48071 * 185.39709 * 8 7 5 35 35 H 1.08996 * 109.49246 * 65.35862 * 8 7 5 36 36 H 1.09000 * 109.47075 * 60.00062 * 12 11 9 37 37 H 1.08996 * 109.47405 * 300.00238 * 12 11 9 38 38 H 1.09000 * 109.46866 * 60.00127 * 13 12 11 39 39 H 1.09001 * 109.46611 * 300.00244 * 13 12 11 40 40 H 1.09000 * 109.47486 * 60.00167 * 14 13 12 41 41 H 1.09001 * 109.47362 * 299.99445 * 14 13 12 42 42 H 1.08993 * 109.46955 * 300.00075 * 15 14 13 43 43 H 1.09000 * 109.47050 * 59.99904 * 15 14 13 44 44 H 0.96992 * 120.00032 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0410 -0.7230 -1.2506 5 6 1.6375 -2.1782 -1.1634 6 8 1.0640 -2.7178 -2.0790 7 6 1.9704 -2.9404 0.1002 8 6 1.4619 -2.1369 1.3018 9 6 2.0401 -0.7217 1.2484 10 1 3.1282 -0.7760 1.2150 11 8 1.6361 0.0007 2.4132 12 6 2.5399 -0.1183 3.5135 13 6 2.0101 0.6916 4.6987 14 6 2.9783 0.5647 5.8766 15 6 2.4487 1.3751 7.0614 16 6 3.4020 1.2496 8.2219 17 1 4.2958 0.6514 8.1242 18 6 3.1325 1.8977 9.4086 19 7 2.0438 2.6258 9.5277 20 14 4.3144 1.7428 10.8468 21 1 5.6480 2.2613 10.4497 22 1 3.8005 2.5292 11.9968 23 1 4.4347 0.3150 11.2371 24 1 -0.3634 0.5133 0.8903 25 1 -0.3634 0.5145 -0.8897 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1306 1.4418 -0.0005 28 1 1.6769 1.9564 -0.8897 29 1 1.6779 1.9560 0.8903 30 1 3.1272 -0.6466 -1.2995 31 1 1.6019 -0.2742 -2.1416 32 1 3.0501 -3.0691 0.1764 33 1 1.4832 -3.9152 0.0789 34 1 1.7775 -2.6239 2.2245 35 1 0.3735 -2.0863 1.2712 36 1 3.5189 0.2625 3.2224 37 1 2.6282 -1.1663 3.7996 38 1 1.0311 0.3112 4.9899 39 1 1.9223 1.7396 4.4122 40 1 3.9572 0.9453 5.5850 41 1 3.0665 -0.4833 6.1631 42 1 2.3608 2.4229 6.7746 43 1 1.4697 0.9949 7.3531 44 1 1.8544 3.0821 10.3624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224689703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:50 Heat of formation + Delta-G solvation = -126.968371 kcal Electronic energy + Delta-G solvation = -20713.680797 eV Core-core repulsion = 17629.585789 eV Total energy + Delta-G solvation = -3084.095009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76686 -38.62677 -36.42641 -34.43886 -33.21514 -32.28601 -29.31377 -28.39954 -27.48261 -26.55937 -24.72392 -22.74980 -21.70365 -20.60881 -20.07848 -18.68204 -16.74871 -16.28723 -16.04460 -15.97162 -15.73236 -15.32425 -14.77674 -14.48814 -14.06730 -13.70335 -13.64518 -13.30462 -12.76893 -12.64244 -12.39617 -12.34759 -12.07209 -11.94219 -11.79225 -11.74548 -11.34339 -11.25296 -10.96953 -10.93308 -10.67854 -10.61167 -10.49879 -10.39907 -9.80422 -9.67896 -9.36844 -9.31807 -9.06065 -8.33954 -5.99108 -4.01755 1.62024 3.33077 3.37610 3.39701 3.55806 3.77678 4.25124 4.31078 4.46178 4.53342 4.69467 4.79528 4.94616 4.98271 5.00261 5.17887 5.29397 5.33303 5.36627 5.44569 5.45382 5.54198 5.60244 5.61705 5.71989 5.73479 5.74879 5.86263 5.96975 6.09020 6.10030 6.16942 6.21351 6.46111 6.76793 6.90544 7.08719 7.15377 7.34078 7.68630 7.83824 8.01382 8.43422 9.05437 9.62160 11.12230 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042356 B = 0.002857 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.898636 B = 9796.781127 C =10071.744356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 C -0.139 4.139 4 C -0.161 4.161 5 C 0.364 3.636 6 O -0.460 6.460 7 C -0.168 4.168 8 C -0.141 4.141 9 C 0.096 3.904 10 H 0.064 0.936 11 O -0.373 6.373 12 C 0.062 3.938 13 C -0.116 4.116 14 C -0.108 4.108 15 C 0.022 3.978 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 -7.319 -21.362 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.053 4.053 3 C -0.196 4.196 4 C -0.199 4.199 5 C 0.239 3.761 6 O -0.333 6.333 7 C -0.206 4.206 8 C -0.179 4.179 9 C 0.037 3.963 10 H 0.082 0.918 11 O -0.292 6.292 12 C -0.014 4.014 13 C -0.153 4.153 14 C -0.145 4.145 15 C -0.015 4.015 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.252 -7.378 -21.706 22.927 hybrid contribution 0.958 -0.219 0.971 1.382 sum 0.706 -7.597 -20.735 22.094 Atomic orbital electron populations 1.21945 0.93543 1.01906 1.02785 1.20553 0.96930 0.96117 0.91708 1.21808 1.00757 0.94246 1.02816 1.22448 1.03411 0.94051 0.99945 1.24901 0.73924 0.90361 0.86898 1.90412 1.31503 1.71665 1.39727 1.22289 1.03775 1.00290 0.94254 1.22106 1.02696 0.95574 0.97515 1.22035 0.97994 0.90169 0.86087 0.91836 1.87936 1.48828 1.71016 1.21458 1.22754 0.92239 0.99521 0.86877 1.21631 1.00509 0.99866 0.93324 1.21577 0.97305 1.00633 0.95015 1.19080 0.96368 0.94947 0.91130 1.21236 1.07501 1.29918 0.97393 0.92794 1.25032 0.95382 0.95335 0.98744 1.69958 1.25332 1.31889 1.26321 0.86662 0.81275 0.78108 0.81968 1.20266 1.21284 1.20259 0.90797 0.92587 0.92812 0.92685 0.92559 0.90784 0.88204 0.88773 0.88262 0.89037 0.90187 0.90085 0.93621 0.93685 0.91722 0.91715 0.93379 0.93387 0.96558 0.96569 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 7.75 37.15 0.29 -1.07 16 2 C -0.05 -0.46 0.60 -154.41 -0.09 -0.55 16 3 C -0.14 -1.19 8.29 37.16 0.31 -0.88 16 4 C -0.16 -1.22 4.93 -27.49 -0.14 -1.35 16 5 C 0.36 3.37 5.75 -28.48 -0.16 3.21 16 6 O -0.46 -5.84 17.89 6.00 0.11 -5.74 16 7 C -0.17 -1.27 6.17 -27.48 -0.17 -1.44 16 8 C -0.14 -1.23 5.28 -26.63 -0.14 -1.37 16 9 C 0.10 0.91 1.66 -26.77 -0.04 0.87 16 10 H 0.06 0.54 7.78 -51.93 -0.40 0.14 16 11 O -0.37 -4.69 8.63 -35.23 -0.30 -5.00 16 12 C 0.06 0.83 5.74 37.16 0.21 1.04 16 13 C -0.12 -1.94 5.58 -26.73 -0.15 -2.08 16 14 C -0.11 -2.16 5.15 -26.73 -0.14 -2.29 16 15 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 16 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 17 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 20 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H 0.07 0.78 7.78 -51.93 -0.40 0.37 16 25 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 26 H 0.05 0.51 5.60 -51.93 -0.29 0.22 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.76 7.59 -51.93 -0.39 0.37 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.69 7.80 -51.93 -0.40 0.29 16 35 H 0.08 0.76 6.20 -51.93 -0.32 0.44 16 36 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 37 H 0.04 0.56 7.80 -51.93 -0.40 0.16 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -31.42 347.65 -8.10 -39.52 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -8.08 Total: -5.20 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -0.77 Total: -19.11 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.20 Total: -10.73 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.42 -8.10 -39.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.450 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds