Wall clock time and date at job start Mon Mar 30 2020 00:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.49439 * 2 1 4 4 C 1.53234 * 109.48356 * 239.96781 * 2 1 3 5 5 C 1.51265 * 108.53365 * 294.64832 * 4 2 1 6 6 O 1.20762 * 120.84943 * 128.63286 * 5 4 2 7 7 C 1.51268 * 118.30631 * 308.64988 * 5 4 2 8 8 C 1.53233 * 108.53312 * 51.34803 * 7 5 4 9 9 C 1.52957 * 109.48375 * 120.03457 * 2 1 3 10 10 H 1.09000 * 109.35658 * 176.44853 * 9 2 1 11 11 O 1.42898 * 109.41417 * 296.27689 * 9 2 1 12 12 C 1.42896 * 113.99963 * 210.34881 * 11 9 2 13 13 C 1.53006 * 109.47265 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.46997 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.46623 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46866 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99834 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47325 * 59.99531 * 20 18 16 22 22 H 1.48496 * 109.47425 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47183 * 299.99726 * 20 18 16 24 24 H 1.09000 * 109.47223 * 299.96563 * 1 2 3 25 25 H 1.09008 * 109.47175 * 59.96223 * 1 2 3 26 26 H 1.08997 * 109.47314 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46587 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46895 * 300.03227 * 3 2 1 29 29 H 1.08997 * 109.46721 * 60.03796 * 3 2 1 30 30 H 1.08999 * 109.62536 * 174.93660 * 4 2 1 31 31 H 1.08998 * 109.78429 * 54.45229 * 4 2 1 32 32 H 1.09002 * 109.62498 * 291.64236 * 7 5 4 33 33 H 1.08997 * 109.63267 * 171.06364 * 7 5 4 34 34 H 1.09005 * 109.48071 * 185.39709 * 8 7 5 35 35 H 1.08996 * 109.49246 * 65.35862 * 8 7 5 36 36 H 1.09000 * 109.47075 * 60.00062 * 12 11 9 37 37 H 1.08996 * 109.47405 * 300.00238 * 12 11 9 38 38 H 1.09000 * 109.46866 * 60.00127 * 13 12 11 39 39 H 1.09001 * 109.46611 * 300.00244 * 13 12 11 40 40 H 1.09000 * 109.47486 * 60.00167 * 14 13 12 41 41 H 1.09001 * 109.47362 * 299.99445 * 14 13 12 42 42 H 1.08993 * 109.46955 * 300.00075 * 15 14 13 43 43 H 1.09000 * 109.47050 * 59.99904 * 15 14 13 44 44 H 0.96992 * 120.00032 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0410 -0.7230 -1.2506 5 6 1.6375 -2.1782 -1.1634 6 8 1.0640 -2.7178 -2.0790 7 6 1.9704 -2.9404 0.1002 8 6 1.4619 -2.1369 1.3018 9 6 2.0401 -0.7217 1.2484 10 1 3.1282 -0.7760 1.2150 11 8 1.6361 0.0007 2.4132 12 6 2.5399 -0.1183 3.5135 13 6 2.0101 0.6916 4.6987 14 6 2.9783 0.5647 5.8766 15 6 2.4487 1.3751 7.0614 16 6 3.4020 1.2496 8.2219 17 1 4.2958 0.6514 8.1242 18 6 3.1325 1.8977 9.4086 19 7 2.0438 2.6258 9.5277 20 14 4.3144 1.7428 10.8468 21 1 5.6480 2.2613 10.4497 22 1 3.8005 2.5292 11.9968 23 1 4.4347 0.3150 11.2371 24 1 -0.3634 0.5133 0.8903 25 1 -0.3634 0.5145 -0.8897 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1306 1.4418 -0.0005 28 1 1.6769 1.9564 -0.8897 29 1 1.6779 1.9560 0.8903 30 1 3.1272 -0.6466 -1.2995 31 1 1.6019 -0.2742 -2.1416 32 1 3.0501 -3.0691 0.1764 33 1 1.4832 -3.9152 0.0789 34 1 1.7775 -2.6239 2.2245 35 1 0.3735 -2.0863 1.2712 36 1 3.5189 0.2625 3.2224 37 1 2.6282 -1.1663 3.7996 38 1 1.0311 0.3112 4.9899 39 1 1.9223 1.7396 4.4122 40 1 3.9572 0.9453 5.5850 41 1 3.0665 -0.4833 6.1631 42 1 2.3608 2.4229 6.7746 43 1 1.4697 0.9949 7.3531 44 1 1.8544 3.0821 10.3624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224689703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:49 Heat of formation + Delta-G solvation = -144.135813 kcal Electronic energy + Delta-G solvation = -20714.425234 eV Core-core repulsion = 17629.585789 eV Total energy + Delta-G solvation = -3084.839445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.50824 -39.49350 -37.44112 -36.09272 -34.23296 -33.86249 -30.67927 -29.46095 -28.20048 -27.40509 -26.39238 -23.70171 -23.06626 -21.81184 -21.25075 -19.41287 -18.40826 -17.60058 -16.97081 -16.90437 -16.51736 -16.47481 -16.07308 -15.79412 -15.07747 -14.71945 -14.44728 -14.37748 -14.32042 -13.67319 -13.49577 -13.37403 -13.20804 -12.96093 -12.88800 -12.71264 -12.59405 -12.46114 -12.32896 -12.29978 -12.03815 -11.75645 -11.69149 -11.38462 -11.29853 -11.27209 -11.02621 -10.58808 -10.53585 -10.21182 -8.18637 -6.30279 0.90886 1.41076 1.44320 1.52247 2.41748 2.68769 3.11054 3.14343 3.56709 3.63347 3.84810 4.00946 4.12357 4.16998 4.22954 4.26790 4.32711 4.35453 4.51321 4.55211 4.67628 4.70215 4.76079 4.80397 4.86310 4.92239 4.93075 4.95297 5.05107 5.07774 5.15771 5.22054 5.28194 5.29682 5.34754 5.42373 5.48006 5.55798 5.78554 5.88100 6.26104 6.39313 6.46983 6.87678 7.39246 8.93212 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042356 B = 0.002857 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.898636 B = 9796.781127 C =10071.744356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C -0.137 4.137 4 C -0.155 4.155 5 C 0.366 3.634 6 O -0.500 6.500 7 C -0.163 4.163 8 C -0.138 4.138 9 C 0.090 3.910 10 H 0.084 0.916 11 O -0.390 6.390 12 C 0.072 3.928 13 C -0.109 4.109 14 C -0.094 4.094 15 C 0.022 3.978 16 C -0.545 4.545 17 H 0.063 0.937 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.265 1.265 22 H -0.285 1.285 23 H -0.266 1.266 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.127 0.873 31 H 0.095 0.905 32 H 0.126 0.874 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.056 0.944 42 H -0.011 1.011 43 H -0.012 1.012 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.518 -8.243 -21.932 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.050 4.050 3 C -0.194 4.194 4 C -0.193 4.193 5 C 0.244 3.756 6 O -0.376 6.376 7 C -0.200 4.200 8 C -0.176 4.176 9 C 0.032 3.968 10 H 0.102 0.898 11 O -0.309 6.309 12 C -0.004 4.004 13 C -0.147 4.147 14 C -0.132 4.132 15 C -0.015 4.015 16 C -0.583 4.583 17 H 0.081 0.919 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.790 3.210 21 H -0.190 1.190 22 H -0.210 1.210 23 H -0.190 1.190 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.145 0.855 31 H 0.114 0.886 32 H 0.144 0.856 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.008 0.992 43 H 0.006 0.994 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.951 -8.307 -22.284 23.862 hybrid contribution 0.212 0.100 1.130 1.154 sum 2.163 -8.207 -21.155 22.794 Atomic orbital electron populations 1.21936 0.94571 1.01391 1.02267 1.20523 0.96102 0.96393 0.91946 1.21782 1.01500 0.93883 1.02264 1.22438 1.05034 0.92590 0.99197 1.25310 0.72450 0.91102 0.86713 1.90409 1.33391 1.72592 1.41253 1.22287 1.05384 0.99722 0.92646 1.22052 1.01922 0.95378 0.98217 1.22264 0.99271 0.90199 0.85048 0.89818 1.87912 1.49032 1.71809 1.22156 1.22514 0.92478 0.99443 0.85968 1.21442 0.99244 1.00103 0.93906 1.21351 0.98092 0.99834 0.93905 1.19021 0.95049 0.94216 0.93234 1.21728 1.08152 1.29980 0.98407 0.91873 1.26032 0.97207 0.94811 1.02053 1.70104 1.27379 1.32872 1.27260 0.85485 0.78984 0.78600 0.77896 1.19006 1.21000 1.19050 0.92455 0.91956 0.93334 0.91438 0.91589 0.92898 0.85517 0.88604 0.85604 0.89076 0.89776 0.91431 0.92129 0.92389 0.92878 0.92669 0.92445 0.92567 0.99249 0.99358 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 7.75 71.98 0.56 -2.08 16 2 C -0.05 -0.76 0.60 -52.12 -0.03 -0.79 16 3 C -0.14 -2.09 8.29 71.98 0.60 -1.49 16 4 C -0.16 -1.96 4.93 30.11 0.15 -1.81 16 5 C 0.37 6.13 5.75 29.46 0.17 6.30 16 6 O -0.50 -12.33 17.89 -1.46 -0.03 -12.35 16 7 C -0.16 -2.08 6.17 30.11 0.19 -1.89 16 8 C -0.14 -2.13 5.28 30.66 0.16 -1.97 16 9 C 0.09 1.50 1.66 30.57 0.05 1.55 16 10 H 0.08 1.10 7.78 -2.39 -0.02 1.08 16 11 O -0.39 -9.24 8.63 -148.98 -1.29 -10.53 16 12 C 0.07 1.78 5.74 71.98 0.41 2.19 16 13 C -0.11 -3.62 5.58 30.60 0.17 -3.45 16 14 C -0.09 -3.72 5.15 30.60 0.16 -3.57 16 15 C 0.02 1.16 4.97 29.85 0.15 1.31 16 16 C -0.54 -31.04 9.11 25.60 0.23 -30.80 16 17 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 18 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 19 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 20 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H 0.06 1.23 7.78 -2.39 -0.02 1.21 16 25 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.05 0.92 5.60 -2.39 -0.01 0.91 16 27 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 1.04 7.59 -2.39 -0.02 1.03 16 30 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.25 7.80 -2.38 -0.02 1.24 16 35 H 0.07 1.23 6.20 -2.39 -0.01 1.21 16 36 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 37 H 0.06 1.29 7.80 -2.39 -0.02 1.27 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 41 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 42 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 43 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 44 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -68.79 347.65 5.36 -63.43 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 0.94 Total: 6.94 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 3.43 Total: -36.26 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.28 Total: -57.34 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -1.31 Total: -22.88 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -68.79 5.36 -63.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.706 kcal (2) G-P(sol) polarization free energy of solvation -68.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds