Wall clock time and date at job start Mon Mar 30 2020 00:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.62221 * 2 1 4 4 C 1.51663 * 109.55811 * 239.50979 * 2 1 3 5 5 O 1.20759 * 121.09881 * 8.86603 * 4 2 1 6 6 C 1.51266 * 118.04935 * 189.02260 * 4 2 1 7 7 C 1.53233 * 108.69594 * 51.26381 * 6 4 2 8 8 C 1.52955 * 109.40144 * 305.27439 * 7 6 4 9 9 C 1.52965 * 109.81734 * 63.60162 * 8 7 6 10 10 H 1.09003 * 109.47963 * 176.41794 * 9 8 7 11 11 O 1.42904 * 109.48365 * 56.37845 * 9 8 7 12 12 C 1.42893 * 113.99901 * 89.99866 * 11 9 8 13 13 C 1.52999 * 109.47148 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47526 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47207 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47036 * 179.97438 * 15 14 13 17 17 H 1.08009 * 120.00001 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00045 * 179.97438 * 16 15 14 19 19 N 1.31524 * 120.00082 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00130 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47346 * 89.99750 * 20 18 16 22 22 H 1.48501 * 109.47237 * 210.00120 * 20 18 16 23 23 H 1.48499 * 109.47081 * 329.99788 * 20 18 16 24 24 H 1.09006 * 109.47121 * 299.62409 * 1 2 3 25 25 H 1.09004 * 109.46933 * 59.61985 * 1 2 3 26 26 H 1.08994 * 109.47202 * 179.62410 * 1 2 3 27 27 H 1.08998 * 109.47215 * 180.38283 * 3 2 1 28 28 H 1.09000 * 109.46944 * 300.37875 * 3 2 1 29 29 H 1.08994 * 109.47284 * 60.37711 * 3 2 1 30 30 H 1.09002 * 109.62649 * 291.45148 * 6 4 2 31 31 H 1.09001 * 109.62544 * 171.07494 * 6 4 2 32 32 H 1.08998 * 109.48072 * 65.25266 * 7 6 4 33 33 H 1.08999 * 109.48148 * 185.28557 * 7 6 4 34 34 H 1.09001 * 109.41180 * 183.70154 * 8 7 6 35 35 H 1.08998 * 109.41949 * 303.49572 * 8 7 6 36 36 H 1.09001 * 109.47714 * 299.99943 * 12 11 9 37 37 H 1.09000 * 109.47377 * 60.00131 * 12 11 9 38 38 H 1.08995 * 109.47464 * 300.00440 * 13 12 11 39 39 H 1.09004 * 109.46773 * 60.00324 * 13 12 11 40 40 H 1.09004 * 109.46737 * 300.00095 * 14 13 12 41 41 H 1.08991 * 109.46997 * 60.00087 * 14 13 12 42 42 H 1.08992 * 109.46979 * 300.00263 * 15 14 13 43 43 H 1.09004 * 109.47093 * 60.00246 * 15 14 13 44 44 H 0.97001 * 119.99935 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0438 1.4412 0.0000 4 6 2.0377 -0.7251 -1.2315 5 8 1.2838 -1.0596 -2.1136 6 6 3.5183 -1.0217 -1.3225 7 6 3.9608 -1.7145 -0.0294 8 6 3.5677 -0.8507 1.1701 9 6 2.0446 -0.7298 1.2451 10 1 1.7682 -0.1670 2.1367 11 8 1.4654 -2.0347 1.3062 12 6 1.2965 -2.5341 2.6343 13 6 0.6715 -3.9295 2.5789 14 6 0.4900 -4.4640 4.0011 15 6 -0.1344 -5.8596 3.9456 16 6 -0.3126 -6.3863 5.3462 17 1 -0.0102 -5.7857 6.1915 18 6 -0.8615 -7.6347 5.5487 19 7 -1.0174 -8.0941 6.7712 20 14 -1.3838 -8.6736 4.0868 21 1 -0.2446 -9.5191 3.6480 22 1 -2.5228 -9.5423 4.4785 23 1 -1.7994 -7.7855 2.9716 24 1 -0.3634 0.5080 0.8934 25 1 -0.3633 0.5198 -0.8866 26 1 -0.3633 -1.0276 -0.0067 27 1 3.1338 1.4383 -0.0069 28 1 1.6763 1.9579 -0.8866 29 1 1.6874 1.9540 0.8933 30 1 4.0712 -0.0906 -1.4467 31 1 3.7088 -1.6768 -2.1726 32 1 3.4736 -2.6865 0.0473 33 1 5.0423 -1.8498 -0.0413 34 1 3.9400 -1.3107 2.0854 35 1 4.0049 0.1418 1.0608 36 1 2.2668 -2.5895 3.1279 37 1 0.6422 -1.8653 3.1935 38 1 -0.2989 -3.8737 2.0856 39 1 1.3255 -4.5985 2.0196 40 1 1.4602 -4.5197 4.4947 41 1 -0.1641 -3.7948 4.5599 42 1 -1.1045 -5.8042 3.4517 43 1 0.5201 -6.5286 3.3868 44 1 -1.4033 -8.9726 6.9136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224690431.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:52 Heat of formation + Delta-G solvation = -122.015363 kcal Electronic energy + Delta-G solvation = -21047.632424 eV Core-core repulsion = 17963.752194 eV Total energy + Delta-G solvation = -3083.880230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81243 -38.28495 -36.04660 -34.46260 -33.93755 -32.27064 -29.61944 -28.83690 -27.51674 -25.87653 -24.65396 -22.43397 -21.81325 -21.25932 -20.08654 -18.45688 -16.76228 -16.63533 -16.23744 -16.02387 -15.49600 -15.13715 -14.74493 -14.33409 -14.04507 -13.76664 -13.37662 -13.17959 -12.84865 -12.75462 -12.55978 -12.46409 -12.28603 -11.96994 -11.88052 -11.70020 -11.55745 -11.44037 -11.14482 -10.95119 -10.83740 -10.64680 -10.52409 -9.89305 -9.70285 -9.56860 -9.53456 -9.39136 -9.15728 -8.51630 -6.02628 -4.00481 1.84321 3.33270 3.40541 3.45643 3.48074 3.80444 4.29986 4.43602 4.47764 4.57238 4.63025 4.85172 4.90331 5.01048 5.03417 5.23161 5.28273 5.29465 5.30583 5.32615 5.39201 5.51084 5.59144 5.61288 5.64806 5.69020 5.75526 5.84889 5.90060 5.96426 6.01115 6.07858 6.20256 6.34257 6.62774 6.72776 6.90264 7.25157 7.33282 7.36917 7.46264 7.81905 8.55779 9.02075 9.60359 11.10864 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.030400 B = 0.003389 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.845597 B = 8260.100098 C = 8378.669499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 C -0.137 4.137 4 C 0.379 3.621 5 O -0.451 6.451 6 C -0.169 4.169 7 C -0.109 4.109 8 C -0.149 4.149 9 C 0.102 3.898 10 H 0.071 0.929 11 O -0.378 6.378 12 C 0.064 3.936 13 C -0.119 4.119 14 C -0.099 4.099 15 C -0.014 4.014 16 C -0.520 4.520 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.016 0.984 43 H 0.011 0.989 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.425 20.466 -14.415 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.110 4.110 3 C -0.194 4.194 4 C 0.253 3.747 5 O -0.323 6.323 6 C -0.206 4.206 7 C -0.146 4.146 8 C -0.187 4.187 9 C 0.044 3.956 10 H 0.089 0.911 11 O -0.297 6.297 12 C -0.012 4.012 13 C -0.157 4.157 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.190 1.190 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.892 20.021 -14.948 26.873 hybrid contribution -0.131 -0.535 -0.269 0.613 sum 9.762 19.486 -15.217 26.581 Atomic orbital electron populations 1.21651 0.92022 1.03645 1.01673 1.21460 0.98401 0.96183 0.94913 1.21821 1.01550 0.92817 1.03208 1.24708 0.90654 0.74163 0.85168 1.90381 1.60303 1.42212 1.39380 1.22303 0.95023 1.02775 1.00546 1.21386 1.01249 0.99988 0.92026 1.22137 0.95978 1.01052 0.99488 1.22013 0.92169 0.85140 0.96326 0.91119 1.87940 1.82299 1.31035 1.28438 1.22712 0.99304 0.96323 0.82911 1.21665 1.00912 0.93408 0.99681 1.21392 1.00713 0.98623 0.92961 1.19566 0.95602 0.92190 0.97775 1.21166 1.40978 1.01922 0.91771 0.91099 1.25043 0.95245 0.97696 0.95607 1.69924 1.45497 1.18831 1.20196 0.86767 0.78484 0.80443 0.83549 1.20296 1.21404 1.18953 0.92215 0.92255 0.91014 0.91496 0.91710 0.91093 0.88765 0.89451 0.90267 0.90934 0.90754 0.90491 0.93425 0.93418 0.91722 0.91760 0.92766 0.92730 0.96578 0.97033 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 7.68 37.16 0.29 -1.14 16 2 C -0.11 -1.03 0.61 -155.07 -0.10 -1.13 16 3 C -0.14 -0.87 8.19 37.16 0.30 -0.57 16 4 C 0.38 4.29 5.72 -28.28 -0.16 4.13 16 5 O -0.45 -6.77 16.91 6.00 0.10 -6.67 16 6 C -0.17 -1.42 5.88 -27.49 -0.16 -1.58 16 7 C -0.11 -0.91 5.81 -26.63 -0.15 -1.07 16 8 C -0.15 -1.17 5.38 -26.77 -0.14 -1.31 16 9 C 0.10 0.99 1.90 -26.63 -0.05 0.94 16 10 H 0.07 0.61 7.79 -51.93 -0.40 0.21 16 11 O -0.38 -4.94 7.98 -35.23 -0.28 -5.22 16 12 C 0.06 0.85 5.75 37.16 0.21 1.06 16 13 C -0.12 -1.96 5.58 -26.73 -0.15 -2.10 16 14 C -0.10 -1.95 5.15 -26.73 -0.14 -2.08 16 15 C -0.01 -0.34 4.04 -27.89 -0.11 -0.45 16 16 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 17 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 18 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.91 -28.29 13.96 55.43 0.77 -27.52 16 20 Si 0.88 22.19 27.47 -169.99 -4.67 17.53 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.62 8.07 -51.93 -0.42 0.20 16 26 H 0.07 0.95 7.56 -51.93 -0.39 0.55 16 27 H 0.07 0.33 6.01 -51.93 -0.31 0.02 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.56 7.81 -51.93 -0.41 0.15 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.85 7.50 -51.93 -0.39 0.46 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.59 7.95 -51.93 -0.41 0.18 16 35 H 0.08 0.44 6.42 -51.93 -0.33 0.10 16 36 H 0.05 0.59 7.95 -51.93 -0.41 0.18 16 37 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 43 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -32.88 343.39 -7.76 -40.63 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -8.06 Total: -5.04 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -0.79 Total: -18.88 kcal Atomic # 7 Polarization: -28.29 SS G_CDS: 0.77 Total: -27.52 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.18 Total: -11.89 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.88 -7.76 -40.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690431.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.385 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds