Wall clock time and date at job start Mon Mar 30 2020 00:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.62221 * 2 1 4 4 C 1.51663 * 109.55811 * 239.50979 * 2 1 3 5 5 O 1.20759 * 121.09881 * 8.86603 * 4 2 1 6 6 C 1.51266 * 118.04935 * 189.02260 * 4 2 1 7 7 C 1.53233 * 108.69594 * 51.26381 * 6 4 2 8 8 C 1.52955 * 109.40144 * 305.27439 * 7 6 4 9 9 C 1.52965 * 109.81734 * 63.60162 * 8 7 6 10 10 H 1.09003 * 109.47963 * 176.41794 * 9 8 7 11 11 O 1.42904 * 109.48365 * 56.37845 * 9 8 7 12 12 C 1.42893 * 113.99901 * 89.99866 * 11 9 8 13 13 C 1.52999 * 109.47148 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47526 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47207 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47036 * 179.97438 * 15 14 13 17 17 H 1.08009 * 120.00001 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00045 * 179.97438 * 16 15 14 19 19 N 1.31524 * 120.00082 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00130 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47346 * 89.99750 * 20 18 16 22 22 H 1.48501 * 109.47237 * 210.00120 * 20 18 16 23 23 H 1.48499 * 109.47081 * 329.99788 * 20 18 16 24 24 H 1.09006 * 109.47121 * 299.62409 * 1 2 3 25 25 H 1.09004 * 109.46933 * 59.61985 * 1 2 3 26 26 H 1.08994 * 109.47202 * 179.62410 * 1 2 3 27 27 H 1.08998 * 109.47215 * 180.38283 * 3 2 1 28 28 H 1.09000 * 109.46944 * 300.37875 * 3 2 1 29 29 H 1.08994 * 109.47284 * 60.37711 * 3 2 1 30 30 H 1.09002 * 109.62649 * 291.45148 * 6 4 2 31 31 H 1.09001 * 109.62544 * 171.07494 * 6 4 2 32 32 H 1.08998 * 109.48072 * 65.25266 * 7 6 4 33 33 H 1.08999 * 109.48148 * 185.28557 * 7 6 4 34 34 H 1.09001 * 109.41180 * 183.70154 * 8 7 6 35 35 H 1.08998 * 109.41949 * 303.49572 * 8 7 6 36 36 H 1.09001 * 109.47714 * 299.99943 * 12 11 9 37 37 H 1.09000 * 109.47377 * 60.00131 * 12 11 9 38 38 H 1.08995 * 109.47464 * 300.00440 * 13 12 11 39 39 H 1.09004 * 109.46773 * 60.00324 * 13 12 11 40 40 H 1.09004 * 109.46737 * 300.00095 * 14 13 12 41 41 H 1.08991 * 109.46997 * 60.00087 * 14 13 12 42 42 H 1.08992 * 109.46979 * 300.00263 * 15 14 13 43 43 H 1.09004 * 109.47093 * 60.00246 * 15 14 13 44 44 H 0.97001 * 119.99935 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0438 1.4412 0.0000 4 6 2.0377 -0.7251 -1.2315 5 8 1.2838 -1.0596 -2.1136 6 6 3.5183 -1.0217 -1.3225 7 6 3.9608 -1.7145 -0.0294 8 6 3.5677 -0.8507 1.1701 9 6 2.0446 -0.7298 1.2451 10 1 1.7682 -0.1670 2.1367 11 8 1.4654 -2.0347 1.3062 12 6 1.2965 -2.5341 2.6343 13 6 0.6715 -3.9295 2.5789 14 6 0.4900 -4.4640 4.0011 15 6 -0.1344 -5.8596 3.9456 16 6 -0.3126 -6.3863 5.3462 17 1 -0.0102 -5.7857 6.1915 18 6 -0.8615 -7.6347 5.5487 19 7 -1.0174 -8.0941 6.7712 20 14 -1.3838 -8.6736 4.0868 21 1 -0.2446 -9.5191 3.6480 22 1 -2.5228 -9.5423 4.4785 23 1 -1.7994 -7.7855 2.9716 24 1 -0.3634 0.5080 0.8934 25 1 -0.3633 0.5198 -0.8866 26 1 -0.3633 -1.0276 -0.0067 27 1 3.1338 1.4383 -0.0069 28 1 1.6763 1.9579 -0.8866 29 1 1.6874 1.9540 0.8933 30 1 4.0712 -0.0906 -1.4467 31 1 3.7088 -1.6768 -2.1726 32 1 3.4736 -2.6865 0.0473 33 1 5.0423 -1.8498 -0.0413 34 1 3.9400 -1.3107 2.0854 35 1 4.0049 0.1418 1.0608 36 1 2.2668 -2.5895 3.1279 37 1 0.6422 -1.8653 3.1935 38 1 -0.2989 -3.8737 2.0856 39 1 1.3255 -4.5985 2.0196 40 1 1.4602 -4.5197 4.4947 41 1 -0.1641 -3.7948 4.5599 42 1 -1.1045 -5.8042 3.4517 43 1 0.5201 -6.5286 3.3868 44 1 -1.4033 -8.9726 6.9136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224690431.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:51 Heat of formation + Delta-G solvation = -141.419087 kcal Electronic energy + Delta-G solvation = -21048.473833 eV Core-core repulsion = 17963.752194 eV Total energy + Delta-G solvation = -3084.721639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.61311 -39.24103 -37.14398 -35.98806 -34.61435 -34.27445 -31.07220 -29.81358 -28.20144 -26.96955 -25.99311 -23.27789 -23.10560 -22.13533 -21.77762 -19.27393 -18.84696 -17.60847 -17.08913 -16.98657 -16.42358 -16.23266 -16.08290 -15.69104 -15.19505 -14.82843 -14.59698 -14.39321 -14.01284 -13.74986 -13.65496 -13.35038 -13.31992 -13.08086 -13.01714 -12.86179 -12.59119 -12.51546 -12.25557 -12.17324 -11.95520 -11.77855 -11.67262 -11.45008 -11.36445 -11.28975 -11.26464 -10.77540 -10.43242 -10.19905 -8.31045 -6.34709 1.00659 1.34219 1.36036 1.48388 2.34811 2.61671 3.04319 3.04617 3.59850 3.71682 3.90848 4.02359 4.07347 4.11563 4.19675 4.28619 4.36451 4.42614 4.44697 4.56902 4.58978 4.70034 4.71527 4.78969 4.83306 4.85759 4.92291 5.00378 5.00750 5.10081 5.11212 5.16136 5.18870 5.23030 5.29756 5.31449 5.45126 5.53771 5.61194 5.66296 6.26894 6.34691 6.54478 6.73228 7.30176 8.85687 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.030400 B = 0.003389 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.845597 B = 8260.100098 C = 8378.669499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.109 4.109 3 C -0.133 4.133 4 C 0.372 3.628 5 O -0.501 6.501 6 C -0.166 4.166 7 C -0.107 4.107 8 C -0.146 4.146 9 C 0.094 3.906 10 H 0.087 0.913 11 O -0.399 6.399 12 C 0.072 3.928 13 C -0.111 4.111 14 C -0.091 4.091 15 C -0.014 4.014 16 C -0.533 4.533 17 H 0.035 0.965 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.949 3.051 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.251 1.251 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.982 22.117 -15.541 29.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.110 4.110 3 C -0.190 4.190 4 C 0.250 3.750 5 O -0.377 6.377 6 C -0.203 4.203 7 C -0.145 4.145 8 C -0.183 4.183 9 C 0.037 3.963 10 H 0.105 0.895 11 O -0.319 6.319 12 C -0.004 4.004 13 C -0.149 4.149 14 C -0.128 4.128 15 C -0.052 4.052 16 C -0.571 4.571 17 H 0.053 0.947 18 C -0.193 4.193 19 N -0.592 5.592 20 Si 0.773 3.227 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.175 1.175 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.147 0.853 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.035 0.965 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.471 21.697 -16.068 29.335 hybrid contribution -0.607 -1.002 0.143 1.180 sum 10.865 20.695 -15.926 28.284 Atomic orbital electron populations 1.21627 0.93547 1.01591 1.02202 1.21552 0.97301 0.98102 0.94019 1.21858 1.02952 0.90188 1.04007 1.25425 0.91876 0.72847 0.84897 1.90366 1.61704 1.44365 1.41263 1.22349 0.93199 1.04311 1.00435 1.21383 1.02293 0.98594 0.92222 1.22168 0.94322 1.02662 0.99146 1.22305 0.93488 0.83694 0.96860 0.89527 1.87914 1.82998 1.33031 1.27977 1.22496 0.99878 0.94536 0.83511 1.21475 1.00853 0.95512 0.97055 1.21225 1.00280 0.96112 0.95216 1.19548 0.96065 0.94824 0.94732 1.21531 1.40547 1.01838 0.93144 0.94680 1.26013 0.95341 0.99252 0.98706 1.70067 1.46803 1.19623 1.22686 0.85668 0.78482 0.78718 0.79856 1.19053 1.20780 1.17496 0.90677 0.92703 0.94304 0.89226 0.91731 0.89592 0.85276 0.90189 0.93339 0.88686 0.90527 0.87321 0.92053 0.92590 0.92520 0.92029 0.92579 0.92856 0.96628 0.96538 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 7.68 71.98 0.55 -2.24 16 2 C -0.11 -1.87 0.61 -52.54 -0.03 -1.90 16 3 C -0.13 -1.23 8.19 71.98 0.59 -0.64 16 4 C 0.37 8.10 5.72 29.59 0.17 8.27 16 5 O -0.50 -15.45 16.91 -1.45 -0.02 -15.48 16 6 C -0.17 -2.42 5.88 30.11 0.18 -2.24 16 7 C -0.11 -1.53 5.81 30.66 0.18 -1.35 16 8 C -0.15 -1.75 5.38 30.57 0.16 -1.59 16 9 C 0.09 1.59 1.90 30.66 0.06 1.65 16 10 H 0.09 1.20 7.79 -2.39 -0.02 1.19 16 11 O -0.40 -9.96 7.98 -148.98 -1.19 -11.15 16 12 C 0.07 1.81 5.75 71.98 0.41 2.22 16 13 C -0.11 -3.56 5.58 30.60 0.17 -3.39 16 14 C -0.09 -3.51 5.15 30.60 0.16 -3.35 16 15 C -0.01 -0.69 4.04 29.85 0.12 -0.57 16 16 C -0.53 -31.41 9.66 25.60 0.25 -31.16 16 17 H 0.03 2.24 7.99 -2.91 -0.02 2.22 16 18 C 0.00 0.21 5.47 84.65 0.46 0.67 16 19 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 20 Si 0.95 45.61 27.47 68.60 1.88 47.50 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 24 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.05 1.16 8.07 -2.38 -0.02 1.14 16 26 H 0.04 1.06 7.56 -2.39 -0.02 1.04 16 27 H 0.09 0.43 6.01 -2.39 -0.01 0.41 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.13 0.99 7.81 -2.39 -0.02 0.97 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.00 7.50 -2.39 -0.02 0.98 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.93 7.95 -2.39 -0.02 0.91 16 35 H 0.11 0.65 6.42 -2.39 -0.02 0.63 16 36 H 0.06 1.37 7.95 -2.39 -0.02 1.35 16 37 H 0.06 1.31 8.09 -2.39 -0.02 1.29 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.02 0.74 7.20 -2.39 -0.02 0.73 16 43 H 0.02 0.77 7.57 -2.38 -0.02 0.75 16 44 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -73.84 343.39 5.28 -68.56 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 0.88 Total: 6.49 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 3.43 Total: -35.61 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.30 Total: -60.30 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.21 Total: -26.63 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.88 Total: 47.50 kcal Total: -73.84 5.28 -68.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690431.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.863 kcal (2) G-P(sol) polarization free energy of solvation -73.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds