Wall clock time and date at job start Mon Mar 30 2020 01:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99589 * 2 1 4 4 H 1.48505 * 109.46779 * 239.99916 * 3 2 1 5 5 H 1.48503 * 109.47314 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47071 * 119.99663 * 3 2 1 7 7 C 1.38805 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00414 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64990 * 359.97438 * 9 7 2 11 11 C 1.54906 * 104.83478 * 155.90573 * 10 9 7 12 12 C 1.55159 * 101.58370 * 37.00488 * 11 10 9 13 13 H 1.08999 * 110.71552 * 83.03719 * 12 11 10 14 14 O 1.42899 * 110.72241 * 206.13570 * 12 11 10 15 15 C 1.42902 * 113.99871 * 210.00374 * 14 12 11 16 16 C 1.52996 * 109.46840 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.46955 * 179.97438 * 16 15 14 18 18 N 1.46904 * 109.47093 * 180.02562 * 17 16 15 19 19 C 1.48566 * 110.99843 * 170.00382 * 18 17 16 20 20 C 1.54380 * 104.59262 * 200.95774 * 19 18 17 21 21 C 1.54264 * 105.06204 * 23.85280 * 20 19 18 22 22 C 1.48556 * 111.00162 * 54.58137 * 18 17 16 23 23 C 1.47028 * 125.64964 * 180.02562 * 9 7 2 24 24 H 0.97001 * 120.00633 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.36696 * 37.06496 * 10 9 7 26 26 H 1.09004 * 110.45835 * 274.78685 * 10 9 7 27 27 H 1.08999 * 111.00383 * 278.93668 * 11 10 9 28 28 H 1.08999 * 111.01064 * 155.08435 * 11 10 9 29 29 H 1.08999 * 109.47114 * 59.99819 * 15 14 12 30 30 H 1.08998 * 109.47018 * 299.99598 * 15 14 12 31 31 H 1.09006 * 109.47101 * 60.00248 * 16 15 14 32 32 H 1.09001 * 109.47430 * 299.99893 * 16 15 14 33 33 H 1.09001 * 109.47259 * 59.99955 * 17 16 15 34 34 H 1.08998 * 109.47275 * 299.99831 * 17 16 15 35 35 H 1.08999 * 110.41049 * 319.73313 * 19 18 17 36 36 H 1.08999 * 110.41330 * 82.18261 * 19 18 17 37 37 H 1.09005 * 110.32530 * 142.74561 * 20 19 18 38 38 H 1.08995 * 110.32857 * 264.95872 * 20 19 18 39 39 H 1.08995 * 110.32483 * 241.10627 * 21 20 19 40 40 H 1.09004 * 110.41276 * 118.93861 * 21 20 19 41 41 H 1.08997 * 110.41166 * 277.81957 * 22 18 17 42 42 H 1.09000 * 110.40826 * 40.26311 * 22 18 17 43 43 H 1.08994 * 109.88265 * 61.60347 * 23 9 7 44 44 H 1.09006 * 109.88152 * 300.43945 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1414 -2.5332 0.0005 11 6 -0.4015 -3.9326 -0.6108 12 6 0.7786 -4.7525 -0.0254 13 1 0.5449 -5.1002 0.9808 14 8 1.1007 -5.8538 -0.8771 15 6 1.6318 -6.9866 -0.1865 16 6 1.9379 -8.0989 -1.1914 17 6 2.5072 -9.3115 -0.4522 18 7 2.8017 -10.3793 -1.4171 19 6 3.5733 -11.4764 -0.7780 20 6 4.2533 -12.2098 -1.9540 21 6 4.3322 -11.1651 -3.0863 22 6 3.6932 -9.8882 -2.4991 23 6 1.9319 -3.7275 0.0016 24 1 -0.4851 0.8400 -0.0004 25 1 -0.5992 -1.7591 -0.6154 26 1 -0.5290 -2.4859 1.0183 27 1 -0.3518 -3.8989 -1.6991 28 1 -1.3588 -4.3330 -0.2772 29 1 0.9022 -7.3443 0.5399 30 1 2.5483 -6.7005 0.3296 31 1 2.6675 -7.7414 -1.9181 32 1 1.0213 -8.3849 -1.7073 33 1 1.7781 -9.6691 0.2749 34 1 3.4239 -9.0252 0.0634 35 1 4.3229 -11.0688 -0.0998 36 1 2.9040 -12.1515 -0.2450 37 1 5.2538 -12.5357 -1.6693 38 1 3.6513 -13.0627 -2.2673 39 1 3.7688 -11.5051 -3.9551 40 1 5.3708 -10.9777 -3.3589 41 1 3.1141 -9.3677 -3.2618 42 1 4.4615 -9.2321 -2.0901 43 1 2.5282 -3.8638 0.9038 44 1 2.5586 -3.8514 -0.8817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224744841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:10 Heat of formation + Delta-G solvation = -21.543696 kcal Electronic energy + Delta-G solvation = -20412.845990 eV Core-core repulsion = 17365.615289 eV Total energy + Delta-G solvation = -3047.230701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.28668 -38.31568 -36.06966 -33.95287 -32.14612 -30.32371 -29.17603 -28.96863 -27.02962 -25.07301 -24.12835 -22.28475 -21.23865 -20.51002 -20.09560 -19.93905 -16.94003 -16.73490 -16.43458 -15.92836 -15.52823 -14.68189 -14.65455 -14.21621 -14.05776 -13.74995 -13.31571 -12.95161 -12.74716 -12.39242 -12.22282 -11.78336 -11.72140 -11.57933 -11.54548 -11.31822 -11.18163 -11.07269 -10.92783 -10.80390 -10.73838 -10.63205 -10.22625 -10.12281 -9.74829 -9.51197 -9.04552 -8.75736 -8.63330 -6.81900 -5.63389 -3.05382 3.42139 3.45699 3.47411 3.57565 4.04449 4.36176 4.45638 4.52527 4.68031 4.88771 4.98497 5.07356 5.18733 5.22969 5.30539 5.38824 5.41089 5.45701 5.50709 5.52604 5.54517 5.56222 5.61242 5.71118 5.78494 5.79445 5.85015 5.91447 6.07037 6.12832 6.38592 6.56264 6.57541 6.63050 6.69334 6.74503 6.77234 7.51580 7.63929 7.69695 7.87623 8.37755 9.23572 9.84329 10.49157 11.40678 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039884 B = 0.002829 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.860057 B = 9895.697840 C =10283.515576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.152 3.848 11 C -0.139 4.139 12 C 0.076 3.924 13 H 0.062 0.938 14 O -0.378 6.378 15 C 0.064 3.936 16 C -0.117 4.117 17 C 0.048 3.952 18 N -0.511 5.511 19 C 0.030 3.970 20 C -0.125 4.125 21 C -0.126 4.126 22 C 0.029 3.971 23 C 0.119 3.881 24 H 0.253 0.747 25 H 0.110 0.890 26 H 0.013 0.987 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.019 0.981 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.506 -22.473 -2.039 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.747 3.253 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.028 3.972 11 C -0.178 4.178 12 C 0.018 3.982 13 H 0.080 0.920 14 O -0.296 6.296 15 C -0.014 4.014 16 C -0.155 4.155 17 C -0.081 4.081 18 N -0.235 5.235 19 C -0.098 4.098 20 C -0.163 4.163 21 C -0.164 4.164 22 C -0.099 4.099 23 C -0.008 4.008 24 H 0.064 0.936 25 H 0.128 0.872 26 H 0.031 0.969 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.037 0.963 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.915 -22.416 -2.431 23.077 hybrid contribution 1.340 1.121 0.812 1.926 sum 6.255 -21.295 -1.619 22.253 Atomic orbital electron populations 1.69772 1.04901 1.24930 1.57657 1.24798 0.95757 0.97729 1.02455 0.86125 0.78379 0.82939 0.77887 1.21130 1.21524 1.21231 1.19045 0.90505 0.82401 1.43086 0.90528 1.44390 1.01984 0.99591 1.86975 1.21953 0.84757 0.92259 0.98280 1.23165 0.95330 0.97956 1.01333 1.23236 0.96366 0.85780 0.92787 0.91973 1.87911 1.83391 1.23641 1.34706 1.22372 0.97454 0.86951 0.94605 1.21521 1.02538 0.92907 0.98528 1.22193 0.99958 0.91283 0.94621 1.65422 1.39490 1.08613 1.10016 1.23140 0.96071 0.94170 0.96397 1.22290 1.00384 0.98465 0.95127 1.22309 1.00662 0.94956 0.98501 1.23163 0.94975 0.96697 0.95087 1.21675 0.94378 0.86584 0.98157 0.93631 0.87203 0.96885 0.91153 0.92043 0.93661 0.93731 0.91074 0.90296 0.90330 0.94442 0.93814 0.90118 0.91447 0.91030 0.90990 0.91390 0.89699 0.93631 0.96315 0.94913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.41 10.09 55.49 0.56 -26.85 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.92 22.41 29.55 -169.99 -5.02 17.39 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.22 -6.40 10.27 -15.06 -0.15 -6.55 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -16.20 3.39 -170.07 -0.58 -16.78 16 10 C 0.15 3.84 5.89 -2.53 -0.01 3.83 16 11 C -0.14 -2.86 6.81 -24.58 -0.17 -3.02 16 12 C 0.08 1.47 3.44 -24.90 -0.09 1.39 16 13 H 0.06 1.11 7.82 -51.93 -0.41 0.70 16 14 O -0.38 -6.71 10.07 -35.23 -0.35 -7.06 16 15 C 0.06 0.87 5.77 37.16 0.21 1.08 16 16 C -0.12 -1.37 5.30 -26.73 -0.14 -1.51 16 17 C 0.05 0.47 5.06 -3.82 -0.02 0.46 16 18 N -0.51 -5.05 5.49 -229.97 -1.26 -6.31 16 19 C 0.03 0.24 6.49 -2.18 -0.01 0.23 16 20 C -0.12 -0.87 7.00 -25.35 -0.18 -1.04 16 21 C -0.13 -0.94 7.00 -25.34 -0.18 -1.12 16 22 C 0.03 0.26 5.11 -2.18 -0.01 0.25 16 23 C 0.12 2.67 7.02 -3.06 -0.02 2.65 16 24 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 25 H 0.11 3.08 5.88 -51.93 -0.31 2.77 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.86 6.84 -51.93 -0.36 0.51 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.36 7.88 -51.93 -0.41 -0.05 16 35 H 0.04 0.34 7.82 -51.93 -0.41 -0.06 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.81 7.67 -51.93 -0.40 0.41 16 42 H 0.05 0.43 8.00 -51.93 -0.42 0.01 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.03 0.76 8.06 -51.93 -0.42 0.34 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -30.96 342.47 -10.52 -41.48 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -8.15 Total: -3.21 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -0.87 Total: -3.81 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -1.28 Total: -49.94 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.35 Total: -7.06 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.96 -10.52 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224744841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.932 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds