Wall clock time and date at job start Mon Mar 30 2020 01:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99589 * 2 1 4 4 H 1.48505 * 109.46779 * 239.99916 * 3 2 1 5 5 H 1.48503 * 109.47314 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47071 * 119.99663 * 3 2 1 7 7 C 1.38805 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00414 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64990 * 359.97438 * 9 7 2 11 11 C 1.54906 * 104.83478 * 155.90573 * 10 9 7 12 12 C 1.55159 * 101.58370 * 37.00488 * 11 10 9 13 13 H 1.08999 * 110.71552 * 83.03719 * 12 11 10 14 14 O 1.42899 * 110.72241 * 206.13570 * 12 11 10 15 15 C 1.42902 * 113.99871 * 210.00374 * 14 12 11 16 16 C 1.52996 * 109.46840 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.46955 * 179.97438 * 16 15 14 18 18 N 1.46904 * 109.47093 * 180.02562 * 17 16 15 19 19 C 1.48566 * 110.99843 * 170.00382 * 18 17 16 20 20 C 1.54380 * 104.59262 * 200.95774 * 19 18 17 21 21 C 1.54264 * 105.06204 * 23.85280 * 20 19 18 22 22 C 1.48556 * 111.00162 * 54.58137 * 18 17 16 23 23 C 1.47028 * 125.64964 * 180.02562 * 9 7 2 24 24 H 0.97001 * 120.00633 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.36696 * 37.06496 * 10 9 7 26 26 H 1.09004 * 110.45835 * 274.78685 * 10 9 7 27 27 H 1.08999 * 111.00383 * 278.93668 * 11 10 9 28 28 H 1.08999 * 111.01064 * 155.08435 * 11 10 9 29 29 H 1.08999 * 109.47114 * 59.99819 * 15 14 12 30 30 H 1.08998 * 109.47018 * 299.99598 * 15 14 12 31 31 H 1.09006 * 109.47101 * 60.00248 * 16 15 14 32 32 H 1.09001 * 109.47430 * 299.99893 * 16 15 14 33 33 H 1.09001 * 109.47259 * 59.99955 * 17 16 15 34 34 H 1.08998 * 109.47275 * 299.99831 * 17 16 15 35 35 H 1.08999 * 110.41049 * 319.73313 * 19 18 17 36 36 H 1.08999 * 110.41330 * 82.18261 * 19 18 17 37 37 H 1.09005 * 110.32530 * 142.74561 * 20 19 18 38 38 H 1.08995 * 110.32857 * 264.95872 * 20 19 18 39 39 H 1.08995 * 110.32483 * 241.10627 * 21 20 19 40 40 H 1.09004 * 110.41276 * 118.93861 * 21 20 19 41 41 H 1.08997 * 110.41166 * 277.81957 * 22 18 17 42 42 H 1.09000 * 110.40826 * 40.26311 * 22 18 17 43 43 H 1.08994 * 109.88265 * 61.60347 * 23 9 7 44 44 H 1.09006 * 109.88152 * 300.43945 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1414 -2.5332 0.0005 11 6 -0.4015 -3.9326 -0.6108 12 6 0.7786 -4.7525 -0.0254 13 1 0.5449 -5.1002 0.9808 14 8 1.1007 -5.8538 -0.8771 15 6 1.6318 -6.9866 -0.1865 16 6 1.9379 -8.0989 -1.1914 17 6 2.5072 -9.3115 -0.4522 18 7 2.8017 -10.3793 -1.4171 19 6 3.5733 -11.4764 -0.7780 20 6 4.2533 -12.2098 -1.9540 21 6 4.3322 -11.1651 -3.0863 22 6 3.6932 -9.8882 -2.4991 23 6 1.9319 -3.7275 0.0016 24 1 -0.4851 0.8400 -0.0004 25 1 -0.5992 -1.7591 -0.6154 26 1 -0.5290 -2.4859 1.0183 27 1 -0.3518 -3.8989 -1.6991 28 1 -1.3588 -4.3330 -0.2772 29 1 0.9022 -7.3443 0.5399 30 1 2.5483 -6.7005 0.3296 31 1 2.6675 -7.7414 -1.9181 32 1 1.0213 -8.3849 -1.7073 33 1 1.7781 -9.6691 0.2749 34 1 3.4239 -9.0252 0.0634 35 1 4.3229 -11.0688 -0.0998 36 1 2.9040 -12.1515 -0.2450 37 1 5.2538 -12.5357 -1.6693 38 1 3.6513 -13.0627 -2.2673 39 1 3.7688 -11.5051 -3.9551 40 1 5.3708 -10.9777 -3.3589 41 1 3.1141 -9.3677 -3.2618 42 1 4.4615 -9.2321 -2.0901 43 1 2.5282 -3.8638 0.9038 44 1 2.5586 -3.8514 -0.8817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224744841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:10 Heat of formation + Delta-G solvation = -41.247116 kcal Electronic energy + Delta-G solvation = -20413.700394 eV Core-core repulsion = 17365.615289 eV Total energy + Delta-G solvation = -3048.085105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.13079 -39.71759 -37.68467 -34.97850 -34.03114 -31.44791 -30.78420 -29.72425 -28.80371 -26.55315 -25.59910 -23.17197 -22.09037 -21.94986 -21.73660 -20.98358 -18.98538 -18.03651 -17.18789 -16.94387 -16.66030 -16.48657 -16.08802 -15.46053 -15.21279 -14.85874 -14.79655 -14.28335 -13.82506 -13.65578 -13.58038 -13.23161 -13.08164 -12.92130 -12.68612 -12.54881 -12.39204 -12.22896 -12.18095 -12.06994 -12.02949 -11.86802 -11.78549 -11.62365 -11.35777 -11.32850 -10.76940 -10.46833 -9.47846 -8.93704 -7.79999 -5.25779 1.45647 1.49628 1.56116 2.43840 2.56719 3.12687 3.30366 3.68104 3.73533 3.80269 3.82056 3.97840 4.03522 4.13468 4.15908 4.24768 4.30814 4.35648 4.44187 4.52261 4.62689 4.65316 4.68954 4.74016 4.78771 4.87694 4.95206 4.98085 4.99767 5.02865 5.09598 5.11878 5.19776 5.24030 5.29937 5.42270 5.58559 5.75803 5.89073 6.02672 6.25937 6.35696 7.07212 7.73420 8.37346 9.22037 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039884 B = 0.002829 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.860057 B = 9895.697840 C =10283.515576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.985 3.015 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.079 0.921 9 N -0.626 5.626 10 C 0.154 3.846 11 C -0.127 4.127 12 C 0.093 3.907 13 H 0.085 0.915 14 O -0.390 6.390 15 C 0.058 3.942 16 C -0.107 4.107 17 C 0.054 3.946 18 N -0.525 5.525 19 C 0.028 3.972 20 C -0.122 4.122 21 C -0.125 4.125 22 C 0.025 3.975 23 C 0.114 3.886 24 H 0.250 0.750 25 H 0.077 0.923 26 H -0.003 1.003 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.026 0.974 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.285 -23.990 -1.681 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.812 3.188 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.353 5.353 10 C 0.029 3.971 11 C -0.165 4.165 12 C 0.035 3.965 13 H 0.103 0.897 14 O -0.309 6.309 15 C -0.019 4.019 16 C -0.145 4.145 17 C -0.075 4.075 18 N -0.250 5.250 19 C -0.100 4.100 20 C -0.160 4.160 21 C -0.163 4.163 22 C -0.103 4.103 23 C -0.011 4.011 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.015 0.985 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.044 0.956 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 5.710 -23.973 -2.075 24.731 hybrid contribution 1.121 1.531 0.689 2.019 sum 6.831 -22.442 -1.386 23.499 Atomic orbital electron populations 1.70023 1.06236 1.25367 1.58231 1.25694 0.96746 1.01108 1.02342 0.85061 0.77118 0.78356 0.78220 1.20312 1.21603 1.20259 1.19428 0.91027 0.83717 1.43254 0.90280 1.44704 1.02879 1.00687 1.87022 1.21743 0.84035 0.94268 0.97004 1.22987 0.97537 0.95448 1.00570 1.22963 0.94038 0.85621 0.93912 0.89737 1.87894 1.83621 1.24165 1.35264 1.22630 0.98003 0.85973 0.95302 1.21427 1.02041 0.93014 0.98050 1.22122 1.00185 0.90640 0.94532 1.65425 1.40253 1.08943 1.10334 1.23216 0.96178 0.93755 0.96852 1.22306 1.01119 0.98220 0.94371 1.22322 1.01080 0.94257 0.98672 1.23178 0.94755 0.97462 0.94875 1.21834 0.95608 0.85816 0.97881 0.94075 0.90468 0.98475 0.91944 0.88947 0.91796 0.93300 0.91954 0.90963 0.89483 0.94150 0.93593 0.89521 0.90137 0.90612 0.90910 0.90434 0.90631 0.94081 0.95565 0.95852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.50 10.09 21.65 0.22 -57.28 16 2 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 3 Si 0.99 46.33 29.55 68.60 2.03 48.36 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.25 -14.31 10.27 84.03 0.86 -13.45 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 9 N -0.63 -34.03 3.39 -691.99 -2.35 -36.38 16 10 C 0.15 7.90 5.89 86.85 0.51 8.41 16 11 C -0.13 -5.09 6.81 31.99 0.22 -4.87 16 12 C 0.09 3.43 3.44 31.78 0.11 3.54 16 13 H 0.08 2.77 7.82 -2.39 -0.02 2.75 16 14 O -0.39 -13.18 10.07 -148.98 -1.50 -14.68 16 15 C 0.06 1.45 5.77 71.98 0.42 1.86 16 16 C -0.11 -2.36 5.30 30.59 0.16 -2.20 16 17 C 0.05 0.97 5.06 86.30 0.44 1.41 16 18 N -0.53 -9.57 5.49 -881.48 -4.84 -14.41 16 19 C 0.03 0.39 6.49 86.45 0.56 0.95 16 20 C -0.12 -1.45 7.00 31.49 0.22 -1.23 16 21 C -0.13 -1.68 7.00 31.49 0.22 -1.46 16 22 C 0.03 0.44 5.11 86.45 0.44 0.88 16 23 C 0.11 5.11 7.02 86.73 0.61 5.71 16 24 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 25 H 0.08 4.47 5.88 -2.39 -0.01 4.45 16 26 H 0.00 -0.15 8.14 -2.39 -0.02 -0.16 16 27 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.06 1.39 8.11 -2.39 -0.02 1.37 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.47 6.84 -2.38 -0.02 1.45 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 0.71 7.88 -2.39 -0.02 0.69 16 35 H 0.05 0.63 7.82 -2.39 -0.02 0.61 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 1.42 7.67 -2.39 -0.02 1.40 16 42 H 0.04 0.74 8.00 -2.39 -0.02 0.72 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.02 1.08 8.06 -2.38 -0.02 1.06 16 Total: -1.00 -66.45 342.47 -0.28 -66.72 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.93 Total: 11.48 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 5.23 Total: -3.81 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -6.97 Total: -108.07 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.50 Total: -14.68 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -66.45 -0.28 -66.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224744841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.476 kcal (2) G-P(sol) polarization free energy of solvation -66.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds