Wall clock time and date at job start Mon Mar 30 2020 01:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00181 * 2 1 4 4 H 1.48507 * 109.47423 * 264.53571 * 3 2 1 5 5 H 1.48506 * 109.47201 * 24.53801 * 3 2 1 6 6 H 1.48505 * 109.47132 * 144.53630 * 3 2 1 7 7 C 1.38813 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00032 * 337.63451 * 7 2 1 9 9 N 1.36936 * 119.99624 * 157.63750 * 7 2 1 10 10 C 1.47427 * 125.65168 * 341.47522 * 9 7 2 11 11 C 1.54909 * 104.83235 * 204.16769 * 10 9 7 12 12 C 1.55403 * 101.66668 * 323.07169 * 11 10 9 13 13 H 1.08997 * 110.69575 * 277.04888 * 12 11 10 14 14 O 1.42900 * 110.85111 * 153.70051 * 12 11 10 15 15 C 1.42902 * 113.99736 * 155.08883 * 14 12 11 16 16 C 1.53004 * 109.47324 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47373 * 179.97438 * 16 15 14 18 18 N 1.46902 * 109.47235 * 179.97438 * 17 16 15 19 19 C 1.48534 * 110.99447 * 52.60410 * 18 17 16 20 20 C 1.54947 * 103.22341 * 159.72075 * 19 18 17 21 21 C 1.54598 * 102.91804 * 322.58893 * 20 19 18 22 22 C 1.47896 * 110.99895 * 170.00449 * 18 17 16 23 23 C 1.47031 * 125.64657 * 161.51882 * 9 7 2 24 24 H 0.97002 * 119.99755 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.36611 * 323.00318 * 10 9 7 26 26 H 1.08997 * 110.36487 * 85.32546 * 10 9 7 27 27 H 1.09003 * 111.00620 * 81.06387 * 11 10 9 28 28 H 1.09003 * 111.00231 * 204.91812 * 11 10 9 29 29 H 1.09001 * 109.47014 * 299.99670 * 15 14 12 30 30 H 1.09001 * 109.47169 * 59.99719 * 15 14 12 31 31 H 1.09001 * 109.46861 * 299.99832 * 16 15 14 32 32 H 1.09002 * 109.47055 * 59.99246 * 16 15 14 33 33 H 1.08994 * 109.47627 * 300.00087 * 17 16 15 34 34 H 1.09001 * 109.46859 * 59.99947 * 17 16 15 35 35 H 1.08991 * 110.67135 * 278.15243 * 19 18 17 36 36 H 1.08998 * 110.67000 * 41.29116 * 19 18 17 37 37 H 1.09000 * 110.72330 * 204.22775 * 20 19 18 38 38 H 1.09000 * 110.87459 * 81.01481 * 20 19 18 39 39 H 1.09005 * 110.30447 * 263.04009 * 21 20 19 40 40 H 1.09000 * 110.39068 * 140.92231 * 21 20 19 41 41 H 1.09005 * 109.91634 * 333.50591 * 22 18 17 42 42 H 1.08997 * 109.92207 * 94.80403 * 22 18 17 43 43 H 1.08997 * 109.87811 * 298.32016 * 23 9 7 44 44 H 1.08996 * 109.87895 * 59.33459 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6133 1.9797 -1.3938 5 1 1.3948 2.6832 0.5815 6 1 3.4853 1.4761 0.8123 7 6 2.0102 -1.2022 -0.0005 8 1 1.5311 -2.1024 0.3549 9 7 3.3023 -1.2466 -0.4518 10 6 3.9507 -0.2321 -1.3025 11 6 5.0954 -0.9895 -2.0205 12 6 5.5808 -1.9563 -0.9049 13 1 6.2755 -1.4518 -0.2333 14 8 6.1795 -3.1247 -1.4693 15 6 7.1197 -3.7698 -0.6080 16 6 7.6938 -5.0015 -1.3110 17 6 8.7010 -5.6918 -0.3891 18 7 9.2517 -6.8748 -1.0639 19 6 9.7840 -6.5227 -2.4051 20 6 10.7528 -7.6904 -2.7197 21 6 11.3893 -7.9917 -1.3434 22 6 10.3956 -7.4309 -0.3092 23 6 4.2725 -2.3145 -0.1688 24 1 -0.4850 0.8401 -0.0004 25 1 3.2416 0.1620 -2.0304 26 1 4.3548 0.5742 -0.6903 27 1 4.7180 -1.5450 -2.8792 28 1 5.8900 -0.3054 -2.3183 29 1 7.9275 -3.0780 -0.3689 30 1 6.6199 -4.0763 0.3109 31 1 6.8859 -5.6931 -1.5497 32 1 8.1935 -4.6954 -2.2301 33 1 9.5089 -5.0001 -0.1507 34 1 8.2016 -5.9979 0.5302 35 1 8.9798 -6.4817 -3.1396 36 1 10.3222 -5.5756 -2.3690 37 1 11.5127 -7.3787 -3.4362 38 1 10.2075 -8.5582 -3.0907 39 1 12.3524 -7.4892 -1.2539 40 1 11.5101 -9.0665 -1.2079 41 1 10.8726 -6.6440 0.2753 42 1 10.0535 -8.2300 0.3484 43 1 4.4553 -2.3744 0.9041 44 1 3.8910 -3.2681 -0.5337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224744842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:13 Heat of formation + Delta-G solvation = -18.921710 kcal Electronic energy + Delta-G solvation = -20465.676920 eV Core-core repulsion = 17418.559917 eV Total energy + Delta-G solvation = -3047.117003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.36532 -38.57028 -36.36457 -34.01532 -32.25603 -30.50779 -29.48587 -29.10583 -27.79670 -25.13044 -23.91522 -22.40068 -21.12732 -21.08124 -20.50244 -20.07707 -17.02910 -16.84773 -16.41944 -16.00590 -15.72056 -15.20045 -14.60390 -14.38247 -14.21120 -13.77784 -13.38610 -13.20138 -12.84510 -12.77408 -12.35319 -12.08107 -11.96600 -11.73797 -11.58715 -11.50796 -11.43251 -11.24160 -11.08933 -10.98925 -10.92798 -10.74104 -10.51639 -10.06190 -9.93192 -9.44178 -9.23970 -8.72794 -8.65180 -7.02464 -5.92319 -3.22641 3.35736 3.47117 3.48897 3.51787 3.92848 4.32581 4.37827 4.56603 4.61069 4.81502 4.93703 4.95664 5.02463 5.09984 5.15069 5.20255 5.25327 5.33113 5.38759 5.41642 5.45211 5.47457 5.49368 5.53784 5.57493 5.64340 5.74209 5.82889 5.89991 6.00397 6.07376 6.13960 6.29026 6.50033 6.56736 6.57352 6.64854 6.73314 6.78137 7.52514 7.73388 8.33637 8.85648 9.70849 10.19417 11.23885 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.053759 B = 0.002862 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.713885 B = 9782.202922 C = 9937.260327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.020 3.980 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.302 1.302 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.092 0.908 9 N -0.607 5.607 10 C 0.111 3.889 11 C -0.124 4.124 12 C 0.076 3.924 13 H 0.065 0.935 14 O -0.376 6.376 15 C 0.063 3.937 16 C -0.118 4.118 17 C 0.050 3.950 18 N -0.517 5.517 19 C 0.032 3.968 20 C -0.125 4.125 21 C -0.132 4.132 22 C 0.034 3.966 23 C 0.116 3.884 24 H 0.263 0.737 25 H 0.064 0.936 26 H 0.026 0.974 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.079 0.921 43 H 0.029 0.971 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.944 -12.259 -3.275 27.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.203 1.203 7 C -0.368 4.368 8 H 0.110 0.890 9 N -0.335 5.335 10 C -0.014 4.014 11 C -0.162 4.162 12 C 0.018 3.982 13 H 0.083 0.917 14 O -0.294 6.294 15 C -0.014 4.014 16 C -0.156 4.156 17 C -0.078 4.078 18 N -0.242 5.242 19 C -0.096 4.096 20 C -0.163 4.163 21 C -0.170 4.170 22 C -0.094 4.094 23 C -0.010 4.010 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.047 0.953 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 23.227 -12.623 -3.434 26.657 hybrid contribution 1.129 1.762 0.564 2.167 sum 24.355 -10.861 -2.869 26.821 Atomic orbital electron populations 1.69848 1.05506 1.26555 1.53336 1.24995 0.95187 0.97392 1.00209 0.86964 0.79142 0.84736 0.77803 1.21114 1.22986 1.20345 1.18656 0.84230 0.95507 1.38375 0.89009 1.44668 1.09841 1.22091 1.56862 1.21974 0.93573 0.92498 0.93386 1.22871 0.98166 0.97158 0.98036 1.23214 0.93938 0.85519 0.95565 0.91659 1.87897 1.58066 1.41728 1.41718 1.22394 0.91568 0.93823 0.93630 1.21536 0.99056 0.96161 0.98801 1.22206 0.97177 0.90616 0.97805 1.64797 1.28809 1.27869 1.02695 1.23278 0.97594 0.96803 0.91911 1.22494 0.98255 0.98822 0.96753 1.22406 0.98179 1.01552 0.94872 1.22886 0.90696 0.99359 0.96429 1.21793 0.88911 0.93553 0.96752 0.92709 0.91811 0.95633 0.90115 0.91319 0.93872 0.93126 0.90045 0.91184 0.94587 0.90226 0.89606 0.93660 0.91121 0.90652 0.91625 0.90985 0.93763 0.90264 0.95294 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.52 13.97 55.49 0.78 -27.74 16 2 C 0.02 0.61 5.43 -17.43 -0.09 0.52 16 3 Si 0.88 22.91 24.27 -169.99 -4.13 18.78 16 4 H -0.28 -7.05 6.49 56.52 0.37 -6.68 16 5 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 6 H -0.28 -7.08 6.66 56.52 0.38 -6.70 16 7 C -0.24 -7.06 10.57 -15.06 -0.16 -7.22 16 8 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 9 N -0.61 -15.36 3.21 -170.07 -0.55 -15.91 16 10 C 0.11 2.49 4.69 -2.53 -0.01 2.47 16 11 C -0.12 -2.23 6.82 -24.45 -0.17 -2.40 16 12 C 0.08 1.32 3.41 -24.76 -0.08 1.24 16 13 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 14 O -0.38 -6.07 10.08 -35.23 -0.36 -6.43 16 15 C 0.06 0.79 5.81 37.16 0.22 1.01 16 16 C -0.12 -1.27 5.24 -26.73 -0.14 -1.42 16 17 C 0.05 0.47 5.03 -3.82 -0.02 0.45 16 18 N -0.52 -4.88 5.40 -230.46 -1.24 -6.12 16 19 C 0.03 0.27 5.10 -1.89 -0.01 0.26 16 20 C -0.13 -0.86 7.06 -24.86 -0.18 -1.03 16 21 C -0.13 -0.85 6.93 -25.37 -0.18 -1.03 16 22 C 0.03 0.27 6.70 -2.76 -0.02 0.25 16 23 C 0.12 2.44 7.01 -3.06 -0.02 2.42 16 24 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 25 H 0.06 1.51 6.63 -51.93 -0.34 1.17 16 26 H 0.03 0.59 5.58 -51.93 -0.29 0.30 16 27 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.04 0.49 8.11 -51.93 -0.42 0.07 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.75 6.80 -51.93 -0.35 0.39 16 33 H 0.04 0.32 7.81 -51.93 -0.41 -0.09 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.74 7.66 -51.93 -0.40 0.34 16 36 H 0.05 0.37 8.00 -51.93 -0.42 -0.04 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.04 0.33 7.57 -51.93 -0.39 -0.06 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.04 0.94 8.05 -51.93 -0.42 0.53 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -32.05 337.00 -9.39 -41.45 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -8.12 Total: -4.64 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -0.86 Total: -4.47 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -1.01 Total: -49.77 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.36 Total: -6.43 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.13 Total: 18.78 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.05 -9.39 -41.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224744842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.525 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds