Wall clock time and date at job start Mon Mar 30 2020 01:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00181 * 2 1 4 4 H 1.48507 * 109.47423 * 264.53571 * 3 2 1 5 5 H 1.48506 * 109.47201 * 24.53801 * 3 2 1 6 6 H 1.48505 * 109.47132 * 144.53630 * 3 2 1 7 7 C 1.38813 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00032 * 337.63451 * 7 2 1 9 9 N 1.36936 * 119.99624 * 157.63750 * 7 2 1 10 10 C 1.47427 * 125.65168 * 341.47522 * 9 7 2 11 11 C 1.54909 * 104.83235 * 204.16769 * 10 9 7 12 12 C 1.55403 * 101.66668 * 323.07169 * 11 10 9 13 13 H 1.08997 * 110.69575 * 277.04888 * 12 11 10 14 14 O 1.42900 * 110.85111 * 153.70051 * 12 11 10 15 15 C 1.42902 * 113.99736 * 155.08883 * 14 12 11 16 16 C 1.53004 * 109.47324 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47373 * 179.97438 * 16 15 14 18 18 N 1.46902 * 109.47235 * 179.97438 * 17 16 15 19 19 C 1.48534 * 110.99447 * 52.60410 * 18 17 16 20 20 C 1.54947 * 103.22341 * 159.72075 * 19 18 17 21 21 C 1.54598 * 102.91804 * 322.58893 * 20 19 18 22 22 C 1.47896 * 110.99895 * 170.00449 * 18 17 16 23 23 C 1.47031 * 125.64657 * 161.51882 * 9 7 2 24 24 H 0.97002 * 119.99755 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.36611 * 323.00318 * 10 9 7 26 26 H 1.08997 * 110.36487 * 85.32546 * 10 9 7 27 27 H 1.09003 * 111.00620 * 81.06387 * 11 10 9 28 28 H 1.09003 * 111.00231 * 204.91812 * 11 10 9 29 29 H 1.09001 * 109.47014 * 299.99670 * 15 14 12 30 30 H 1.09001 * 109.47169 * 59.99719 * 15 14 12 31 31 H 1.09001 * 109.46861 * 299.99832 * 16 15 14 32 32 H 1.09002 * 109.47055 * 59.99246 * 16 15 14 33 33 H 1.08994 * 109.47627 * 300.00087 * 17 16 15 34 34 H 1.09001 * 109.46859 * 59.99947 * 17 16 15 35 35 H 1.08991 * 110.67135 * 278.15243 * 19 18 17 36 36 H 1.08998 * 110.67000 * 41.29116 * 19 18 17 37 37 H 1.09000 * 110.72330 * 204.22775 * 20 19 18 38 38 H 1.09000 * 110.87459 * 81.01481 * 20 19 18 39 39 H 1.09005 * 110.30447 * 263.04009 * 21 20 19 40 40 H 1.09000 * 110.39068 * 140.92231 * 21 20 19 41 41 H 1.09005 * 109.91634 * 333.50591 * 22 18 17 42 42 H 1.08997 * 109.92207 * 94.80403 * 22 18 17 43 43 H 1.08997 * 109.87811 * 298.32016 * 23 9 7 44 44 H 1.08996 * 109.87895 * 59.33459 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6133 1.9797 -1.3938 5 1 1.3948 2.6832 0.5815 6 1 3.4853 1.4761 0.8123 7 6 2.0102 -1.2022 -0.0005 8 1 1.5311 -2.1024 0.3549 9 7 3.3023 -1.2466 -0.4518 10 6 3.9507 -0.2321 -1.3025 11 6 5.0954 -0.9895 -2.0205 12 6 5.5808 -1.9563 -0.9049 13 1 6.2755 -1.4518 -0.2333 14 8 6.1795 -3.1247 -1.4693 15 6 7.1197 -3.7698 -0.6080 16 6 7.6938 -5.0015 -1.3110 17 6 8.7010 -5.6918 -0.3891 18 7 9.2517 -6.8748 -1.0639 19 6 9.7840 -6.5227 -2.4051 20 6 10.7528 -7.6904 -2.7197 21 6 11.3893 -7.9917 -1.3434 22 6 10.3956 -7.4309 -0.3092 23 6 4.2725 -2.3145 -0.1688 24 1 -0.4850 0.8401 -0.0004 25 1 3.2416 0.1620 -2.0304 26 1 4.3548 0.5742 -0.6903 27 1 4.7180 -1.5450 -2.8792 28 1 5.8900 -0.3054 -2.3183 29 1 7.9275 -3.0780 -0.3689 30 1 6.6199 -4.0763 0.3109 31 1 6.8859 -5.6931 -1.5497 32 1 8.1935 -4.6954 -2.2301 33 1 9.5089 -5.0001 -0.1507 34 1 8.2016 -5.9979 0.5302 35 1 8.9798 -6.4817 -3.1396 36 1 10.3222 -5.5756 -2.3690 37 1 11.5127 -7.3787 -3.4362 38 1 10.2075 -8.5582 -3.0907 39 1 12.3524 -7.4892 -1.2539 40 1 11.5101 -9.0665 -1.2079 41 1 10.8726 -6.6440 0.2753 42 1 10.0535 -8.2300 0.3484 43 1 4.4553 -2.3744 0.9041 44 1 3.8910 -3.2681 -0.5337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224744842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:12 Heat of formation + Delta-G solvation = -41.280800 kcal Electronic energy + Delta-G solvation = -20466.646483 eV Core-core repulsion = 17418.559917 eV Total energy + Delta-G solvation = -3048.086566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.21348 -39.80799 -37.83752 -34.97114 -34.23363 -31.73893 -30.87243 -29.76633 -29.40774 -26.38613 -25.47299 -23.24549 -22.68022 -21.86085 -21.66256 -21.16264 -19.02038 -18.10666 -17.25033 -17.11950 -16.82373 -16.60193 -15.92346 -15.69019 -15.24546 -15.21456 -14.67128 -14.39419 -14.01034 -13.93414 -13.76961 -13.60262 -13.17309 -13.07117 -12.86979 -12.49590 -12.42840 -12.28888 -12.25889 -12.11435 -12.00423 -11.88432 -11.68916 -11.55974 -11.42957 -11.40638 -10.86199 -10.48226 -9.38836 -9.10493 -8.20632 -5.48954 1.30219 1.38410 1.48207 2.39988 2.46240 2.99599 3.10580 3.38128 3.68643 3.75817 3.80198 3.83066 3.98483 4.06682 4.11731 4.23159 4.27440 4.33348 4.36264 4.45324 4.50268 4.59666 4.65337 4.71939 4.74486 4.75840 4.91432 4.92643 4.94319 4.97882 4.98424 5.07566 5.12267 5.16356 5.22158 5.24512 5.32325 5.63025 5.94747 6.05477 6.06734 6.31020 6.71463 7.49255 8.05030 8.99262 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.053759 B = 0.002862 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.713885 B = 9782.202922 C = 9937.260327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.038 4.038 3 Si 0.952 3.048 4 H -0.264 1.264 5 H -0.305 1.305 6 H -0.266 1.266 7 C -0.243 4.243 8 H 0.054 0.946 9 N -0.627 5.627 10 C 0.102 3.898 11 C -0.113 4.113 12 C 0.091 3.909 13 H 0.093 0.907 14 O -0.387 6.387 15 C 0.058 3.942 16 C -0.108 4.108 17 C 0.056 3.944 18 N -0.536 5.536 19 C 0.029 3.971 20 C -0.124 4.124 21 C -0.129 4.129 22 C 0.031 3.969 23 C 0.110 3.890 24 H 0.264 0.736 25 H 0.046 0.954 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.032 0.968 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.436 -11.506 -3.723 29.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.233 4.233 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.234 1.234 6 H -0.191 1.191 7 C -0.371 4.371 8 H 0.072 0.928 9 N -0.355 5.355 10 C -0.022 4.022 11 C -0.151 4.151 12 C 0.033 3.967 13 H 0.110 0.890 14 O -0.306 6.306 15 C -0.019 4.019 16 C -0.146 4.146 17 C -0.073 4.073 18 N -0.261 5.261 19 C -0.098 4.098 20 C -0.162 4.162 21 C -0.167 4.167 22 C -0.097 4.097 23 C -0.016 4.016 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.050 0.950 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 26.769 -11.893 -3.895 29.550 hybrid contribution 0.020 1.365 0.706 1.537 sum 26.790 -10.528 -3.188 28.960 Atomic orbital electron populations 1.69983 1.07321 1.27493 1.55473 1.25708 0.95917 1.01107 1.00551 0.85865 0.77830 0.79502 0.78887 1.18925 1.23362 1.19094 1.18566 0.86285 0.94427 1.37843 0.92832 1.44760 1.09341 1.23831 1.57550 1.22122 0.94536 0.92607 0.92974 1.22814 0.97507 0.97407 0.97359 1.23020 0.92469 0.86015 0.95246 0.88961 1.87889 1.58751 1.41478 1.42462 1.22625 0.91467 0.94580 0.93248 1.21441 0.98771 0.95231 0.99167 1.22125 0.97024 0.90836 0.97279 1.64780 1.29914 1.27966 1.03393 1.23299 0.97685 0.97580 0.91276 1.22500 0.98236 0.98081 0.97353 1.22413 0.98182 1.02082 0.94050 1.22944 0.90529 0.99456 0.96735 1.21960 0.90230 0.91771 0.97589 0.92692 0.93568 0.94813 0.90638 0.87234 0.91654 0.93244 0.91807 0.90898 0.93567 0.90389 0.90425 0.93369 0.89783 0.91075 0.90579 0.90307 0.93305 0.90381 0.94953 0.95451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.79 13.97 21.65 0.30 -61.49 16 2 C -0.04 -2.32 5.43 84.86 0.46 -1.86 16 3 Si 0.95 47.18 24.27 68.60 1.66 48.85 16 4 H -0.26 -12.12 6.49 99.48 0.65 -11.47 16 5 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 6 H -0.27 -12.56 6.66 99.48 0.66 -11.90 16 7 C -0.24 -14.64 10.57 84.03 0.89 -13.75 16 8 H 0.05 3.52 8.06 -2.91 -0.02 3.50 16 9 N -0.63 -31.60 3.21 -691.98 -2.22 -33.82 16 10 C 0.10 4.35 4.69 86.85 0.41 4.76 16 11 C -0.11 -3.68 6.82 32.07 0.22 -3.46 16 12 C 0.09 2.91 3.41 31.87 0.11 3.02 16 13 H 0.09 2.51 7.89 -2.39 -0.02 2.49 16 14 O -0.39 -11.55 10.08 -148.98 -1.50 -13.05 16 15 C 0.06 1.30 5.81 71.98 0.42 1.72 16 16 C -0.11 -2.17 5.24 30.59 0.16 -2.01 16 17 C 0.06 0.95 5.03 86.30 0.43 1.38 16 18 N -0.54 -9.35 5.40 -883.03 -4.76 -14.11 16 19 C 0.03 0.44 5.10 86.65 0.44 0.88 16 20 C -0.12 -1.47 7.06 31.80 0.22 -1.25 16 21 C -0.13 -1.40 6.93 31.47 0.22 -1.18 16 22 C 0.03 0.43 6.70 86.45 0.58 1.01 16 23 C 0.11 4.56 7.01 86.73 0.61 5.17 16 24 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 25 H 0.05 2.12 6.63 -2.39 -0.02 2.10 16 26 H 0.03 1.42 5.58 -2.39 -0.01 1.40 16 27 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.07 1.22 8.11 -2.39 -0.02 1.20 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.42 6.80 -2.39 -0.02 1.40 16 33 H 0.05 0.70 7.81 -2.39 -0.02 0.68 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.27 7.66 -2.39 -0.02 1.26 16 36 H 0.05 0.70 8.00 -2.39 -0.02 0.68 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.05 0.62 7.57 -2.38 -0.02 0.60 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.03 1.21 8.05 -2.39 -0.02 1.19 16 Total: -1.00 -70.22 337.00 -0.52 -70.74 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.83 Total: 8.46 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 5.17 Total: -5.58 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -6.68 Total: -109.43 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -1.50 Total: -13.05 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.66 Total: 48.85 kcal Total: -70.22 -0.52 -70.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224744842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.463 kcal (2) G-P(sol) polarization free energy of solvation -70.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds