Wall clock time and date at job start Mon Mar 30 2020 01:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42895 * 114.17025 * 139.67367 * 12 11 10 14 14 C 1.42899 * 114.00481 * 116.15468 * 13 12 11 15 15 C 1.53002 * 109.47724 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47301 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46974 * 179.97438 * 16 15 14 18 18 C 1.48532 * 110.99566 * 52.60626 * 17 16 15 19 19 C 1.54937 * 103.22250 * 159.71931 * 18 17 16 20 20 C 1.54601 * 102.92409 * 322.58350 * 19 18 17 21 21 C 1.47901 * 110.99535 * 169.99863 * 17 16 15 22 22 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 27 27 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 28 28 H 1.09002 * 114.16514 * 272.37172 * 12 11 10 29 29 H 1.09006 * 109.47029 * 300.00104 * 14 13 12 30 30 H 1.09002 * 109.46894 * 59.99885 * 14 13 12 31 31 H 1.08998 * 109.46627 * 300.00053 * 15 14 13 32 32 H 1.08995 * 109.46893 * 59.99632 * 15 14 13 33 33 H 1.09001 * 109.47145 * 300.00372 * 16 15 14 34 34 H 1.09002 * 109.47097 * 59.99948 * 16 15 14 35 35 H 1.08998 * 110.66613 * 278.15035 * 18 17 16 36 36 H 1.08996 * 110.66974 * 41.28636 * 18 17 16 37 37 H 1.09004 * 110.72752 * 204.22673 * 19 18 17 38 38 H 1.09001 * 110.72688 * 80.94193 * 19 18 17 39 39 H 1.09001 * 110.30430 * 263.04142 * 20 19 18 40 40 H 1.09001 * 110.30467 * 140.87623 * 20 19 18 41 41 H 1.08994 * 109.92097 * 333.51319 * 21 17 16 42 42 H 1.09003 * 109.91302 * 94.61081 * 21 17 16 43 43 H 1.09000 * 113.47556 * 253.46531 * 22 10 9 44 44 H 1.08997 * 113.47949 * 23.93922 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 1.7491 -6.4380 -1.7035 14 6 2.5901 -7.4751 -2.2127 15 6 1.7722 -8.3952 -3.1213 16 6 2.6728 -9.5051 -3.6669 17 7 1.8873 -10.3888 -4.5387 18 6 1.1702 -9.6090 -5.5798 19 6 0.8615 -10.6691 -6.6668 20 6 2.1276 -11.5562 -6.6540 21 6 2.7650 -11.3274 -5.2709 22 6 1.5184 -4.8986 0.2386 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 1.6756 -3.8466 -2.0765 27 1 3.4598 -3.7930 -1.7440 28 1 3.3715 -5.8925 -0.4639 29 1 3.4065 -7.0332 -2.7840 30 1 2.9980 -8.0523 -1.3829 31 1 0.9555 -8.8370 -2.5504 32 1 1.3646 -7.8177 -3.9509 33 1 3.4892 -9.0629 -4.2378 34 1 3.0807 -10.0827 -2.8373 35 1 0.2476 -9.1893 -5.1788 36 1 1.8098 -8.8225 -5.9801 37 1 0.7315 -10.1966 -7.6405 38 1 -0.0201 -11.2512 -6.3986 39 1 2.8138 -11.2475 -7.4426 40 1 1.8560 -12.6047 -6.7768 41 1 3.7581 -10.8935 -5.3869 42 1 2.8331 -12.2711 -4.7296 43 1 1.6915 -5.3047 1.2352 44 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224749360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:08 Heat of formation + Delta-G solvation = -10.352821 kcal Electronic energy + Delta-G solvation = -19998.625201 eV Core-core repulsion = 16951.879773 eV Total energy + Delta-G solvation = -3046.745428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.58330 -39.26007 -36.82653 -33.98928 -32.79937 -30.48658 -29.22826 -28.87686 -25.48379 -25.31059 -24.55808 -22.42006 -21.54428 -21.12202 -20.58489 -19.30908 -17.03312 -16.45931 -16.34060 -15.89491 -15.84177 -15.25347 -14.59548 -14.39343 -14.22826 -13.86517 -13.47545 -13.33129 -12.82532 -12.61227 -12.26062 -12.08683 -12.00298 -11.74613 -11.55070 -11.45478 -11.35220 -11.27382 -10.96250 -10.94245 -10.88782 -10.66681 -10.52200 -10.16540 -9.72413 -9.21856 -9.09723 -8.74636 -8.41798 -7.90518 -6.01776 -4.03184 3.34789 3.38111 3.41455 3.47008 3.91607 4.32235 4.37448 4.44635 4.60913 4.77487 4.90855 4.94066 4.97383 5.03069 5.08765 5.16059 5.26212 5.31597 5.33267 5.35260 5.40216 5.44812 5.49331 5.51476 5.64255 5.73960 5.82079 5.90274 5.98009 6.05532 6.11066 6.21650 6.33882 6.43164 6.55665 6.61759 6.71320 7.21668 7.48359 7.66633 7.87068 8.11856 8.46690 9.03672 9.60491 11.09329 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038605 B = 0.002523 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.111892 B =11094.103195 C =11358.373240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.053 3.947 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.162 3.838 10 N -0.465 5.465 11 C -0.005 4.005 12 C 0.052 3.948 13 O -0.375 6.375 14 C 0.064 3.936 15 C -0.119 4.119 16 C 0.050 3.950 17 N -0.518 5.518 18 C 0.031 3.969 19 C -0.125 4.125 20 C -0.132 4.132 21 C 0.034 3.966 22 C -0.003 4.003 23 H 0.262 0.738 24 H 0.030 0.970 25 H 0.005 0.995 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 -22.944 -11.503 26.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.148 4.148 3 Si 0.729 3.271 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.036 3.964 10 N -0.189 5.189 11 C -0.135 4.135 12 C -0.006 4.006 13 O -0.293 6.293 14 C -0.013 4.013 15 C -0.157 4.157 16 C -0.078 4.078 17 N -0.242 5.242 18 C -0.097 4.097 19 C -0.163 4.163 20 C -0.170 4.170 21 C -0.094 4.094 22 C -0.132 4.132 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.023 0.977 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.549 -22.824 -10.755 25.638 hybrid contribution 0.552 1.293 -0.908 1.674 sum 5.101 -21.531 -11.663 25.013 Atomic orbital electron populations 1.69953 1.06068 1.26926 1.50993 1.25019 0.94915 0.99402 0.95446 0.86515 0.79396 0.82566 0.78661 1.21327 1.20139 1.20272 1.21062 0.93544 0.89769 1.50053 0.91922 1.20256 0.90565 0.88823 0.96803 1.68948 1.33783 1.01630 1.14544 1.24243 1.02193 0.92813 0.94204 1.24003 0.96322 0.88488 0.91787 1.87942 1.36625 1.39939 1.64782 1.22398 0.93282 0.89192 0.96476 1.21551 0.99104 0.95381 0.99669 1.22202 0.94754 0.93768 0.97076 1.64804 1.25339 1.16155 1.17915 1.23287 0.99242 0.95442 0.91686 1.22498 0.98189 0.97088 0.98563 1.22403 0.97317 1.00728 0.96550 1.22881 0.94959 0.97590 0.93941 1.24047 0.98070 0.92939 0.98173 0.92839 0.95240 0.97701 0.91105 0.90707 0.88906 0.93606 0.93410 0.90204 0.91000 0.94485 0.90372 0.89580 0.93537 0.91032 0.90673 0.91563 0.91000 0.93768 0.90329 0.90372 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.79 9.39 -34.44 -0.32 -15.11 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.16 4.38 4.57 -4.98 -0.02 4.36 16 10 N -0.46 -10.56 6.32 -246.08 -1.55 -12.11 16 11 C -0.01 -0.10 7.55 -7.54 -0.06 -0.16 16 12 C 0.05 0.86 4.65 -26.20 -0.12 0.74 16 13 O -0.37 -5.90 10.39 -35.23 -0.37 -6.27 16 14 C 0.06 0.75 5.78 37.16 0.21 0.97 16 15 C -0.12 -1.25 5.24 -26.73 -0.14 -1.39 16 16 C 0.05 0.45 5.03 -3.82 -0.02 0.43 16 17 N -0.52 -4.74 5.40 -230.46 -1.24 -5.98 16 18 C 0.03 0.26 5.10 -1.90 -0.01 0.25 16 19 C -0.13 -0.87 7.06 -24.87 -0.18 -1.05 16 20 C -0.13 -0.85 6.93 -25.37 -0.18 -1.02 16 21 C 0.03 0.26 6.69 -2.75 -0.02 0.24 16 22 C 0.00 -0.06 7.52 -7.53 -0.06 -0.11 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.03 0.85 8.08 -51.92 -0.42 0.43 16 25 H 0.01 0.15 7.30 -51.93 -0.38 -0.23 16 26 H 0.07 1.49 7.42 -51.93 -0.39 1.10 16 27 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.09 1.36 7.88 -51.93 -0.41 0.95 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.79 6.79 -51.93 -0.35 0.44 16 33 H 0.04 0.32 7.81 -51.93 -0.41 -0.09 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.76 7.66 -51.93 -0.40 0.36 16 36 H 0.05 0.40 8.00 -51.93 -0.42 -0.02 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.04 0.32 7.57 -51.93 -0.39 -0.07 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -31.35 349.35 -11.35 -42.70 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -8.16 Total: -3.72 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -1.00 Total: -10.39 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -2.06 Total: -44.68 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.37 Total: -6.27 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.35 -11.35 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224749360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.345 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds