Wall clock time and date at job start Mon Mar 30 2020 01:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42895 * 114.17025 * 139.67367 * 12 11 10 14 14 C 1.42899 * 114.00481 * 116.15468 * 13 12 11 15 15 C 1.53002 * 109.47724 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47301 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46974 * 179.97438 * 16 15 14 18 18 C 1.48532 * 110.99566 * 52.60626 * 17 16 15 19 19 C 1.54937 * 103.22250 * 159.71931 * 18 17 16 20 20 C 1.54601 * 102.92409 * 322.58350 * 19 18 17 21 21 C 1.47901 * 110.99535 * 169.99863 * 17 16 15 22 22 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 27 27 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 28 28 H 1.09002 * 114.16514 * 272.37172 * 12 11 10 29 29 H 1.09006 * 109.47029 * 300.00104 * 14 13 12 30 30 H 1.09002 * 109.46894 * 59.99885 * 14 13 12 31 31 H 1.08998 * 109.46627 * 300.00053 * 15 14 13 32 32 H 1.08995 * 109.46893 * 59.99632 * 15 14 13 33 33 H 1.09001 * 109.47145 * 300.00372 * 16 15 14 34 34 H 1.09002 * 109.47097 * 59.99948 * 16 15 14 35 35 H 1.08998 * 110.66613 * 278.15035 * 18 17 16 36 36 H 1.08996 * 110.66974 * 41.28636 * 18 17 16 37 37 H 1.09004 * 110.72752 * 204.22673 * 19 18 17 38 38 H 1.09001 * 110.72688 * 80.94193 * 19 18 17 39 39 H 1.09001 * 110.30430 * 263.04142 * 20 19 18 40 40 H 1.09001 * 110.30467 * 140.87623 * 20 19 18 41 41 H 1.08994 * 109.92097 * 333.51319 * 21 17 16 42 42 H 1.09003 * 109.91302 * 94.61081 * 21 17 16 43 43 H 1.09000 * 113.47556 * 253.46531 * 22 10 9 44 44 H 1.08997 * 113.47949 * 23.93922 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 1.7491 -6.4380 -1.7035 14 6 2.5901 -7.4751 -2.2127 15 6 1.7722 -8.3952 -3.1213 16 6 2.6728 -9.5051 -3.6669 17 7 1.8873 -10.3888 -4.5387 18 6 1.1702 -9.6090 -5.5798 19 6 0.8615 -10.6691 -6.6668 20 6 2.1276 -11.5562 -6.6540 21 6 2.7650 -11.3274 -5.2709 22 6 1.5184 -4.8986 0.2386 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 1.6756 -3.8466 -2.0765 27 1 3.4598 -3.7930 -1.7440 28 1 3.3715 -5.8925 -0.4639 29 1 3.4065 -7.0332 -2.7840 30 1 2.9980 -8.0523 -1.3829 31 1 0.9555 -8.8370 -2.5504 32 1 1.3646 -7.8177 -3.9509 33 1 3.4892 -9.0629 -4.2378 34 1 3.0807 -10.0827 -2.8373 35 1 0.2476 -9.1893 -5.1788 36 1 1.8098 -8.8225 -5.9801 37 1 0.7315 -10.1966 -7.6405 38 1 -0.0201 -11.2512 -6.3986 39 1 2.8138 -11.2475 -7.4426 40 1 1.8560 -12.6047 -6.7768 41 1 3.7581 -10.8935 -5.3869 42 1 2.8331 -12.2711 -4.7296 43 1 1.6915 -5.3047 1.2352 44 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224749360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:07 Heat of formation + Delta-G solvation = -33.431701 kcal Electronic energy + Delta-G solvation = -19999.625976 eV Core-core repulsion = 16951.879773 eV Total energy + Delta-G solvation = -3047.746203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.07661 -39.96154 -38.08297 -35.13930 -34.64399 -31.52011 -30.66550 -29.73509 -27.20029 -26.82281 -25.70795 -23.44197 -23.18691 -21.70591 -21.39199 -20.76841 -18.67791 -18.04072 -17.21372 -17.01939 -16.72953 -16.61967 -16.29947 -15.68684 -15.25209 -15.07844 -14.66553 -14.34116 -14.17666 -13.81061 -13.68215 -13.49881 -13.27706 -12.91671 -12.85588 -12.51815 -12.32016 -12.30102 -12.27168 -12.08144 -12.02236 -11.96247 -11.65964 -11.57298 -11.41700 -11.22955 -10.64074 -10.39219 -9.77264 -9.40558 -8.25054 -6.36473 1.38817 1.43035 1.51258 2.36686 2.49036 3.06607 3.10172 3.38396 3.46456 3.72858 3.78426 3.95088 3.97997 4.08766 4.18918 4.26637 4.34919 4.40304 4.47784 4.50022 4.54465 4.63295 4.64206 4.67877 4.71931 4.74611 4.85091 4.91158 4.91683 4.96698 5.02808 5.06699 5.10946 5.20365 5.22135 5.31442 5.53041 5.72034 5.92435 6.02866 6.05476 6.30704 6.37822 6.77224 7.33069 8.86329 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038605 B = 0.002523 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.111892 B =11094.103195 C =11358.373240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.280 1.280 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.177 3.823 10 N -0.479 5.479 11 C -0.012 4.012 12 C 0.084 3.916 13 O -0.393 6.393 14 C 0.058 3.942 15 C -0.112 4.112 16 C 0.056 3.944 17 N -0.533 5.533 18 C 0.028 3.972 19 C -0.124 4.124 20 C -0.129 4.129 21 C 0.031 3.969 22 C -0.009 4.009 23 H 0.266 0.734 24 H 0.002 0.998 25 H -0.023 1.023 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.125 0.875 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.622 -23.803 -11.984 27.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.205 1.205 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.080 0.920 9 C 0.050 3.950 10 N -0.203 5.203 11 C -0.142 4.142 12 C 0.026 3.974 13 O -0.311 6.311 14 C -0.018 4.018 15 C -0.149 4.149 16 C -0.072 4.072 17 N -0.258 5.258 18 C -0.100 4.100 19 C -0.162 4.162 20 C -0.167 4.167 21 C -0.096 4.096 22 C -0.138 4.138 23 H 0.075 0.925 24 H 0.020 0.980 25 H -0.006 1.006 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.143 0.857 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.447 -23.715 -11.243 27.026 hybrid contribution -0.076 1.464 -0.786 1.663 sum 6.371 -22.251 -12.029 26.085 Atomic orbital electron populations 1.70085 1.07820 1.28190 1.51413 1.26017 0.95869 1.03524 0.94533 0.85343 0.78110 0.77377 0.79230 1.20546 1.19107 1.19156 1.21393 0.93662 0.91063 1.50642 0.92031 1.19911 0.90584 0.90460 0.94064 1.68843 1.32873 1.01867 1.16718 1.24294 1.01914 0.95511 0.92469 1.23693 0.96565 0.87138 0.90009 1.87927 1.37876 1.40642 1.64660 1.22656 0.93238 0.88523 0.97415 1.21469 0.99000 0.95506 0.98965 1.22141 0.94366 0.93313 0.97400 1.64801 1.26004 1.16489 1.18458 1.23289 0.98734 0.95845 0.92099 1.22505 0.98469 0.96770 0.98475 1.22414 0.97000 1.01156 0.96171 1.22949 0.94940 0.97326 0.94408 1.24120 0.97642 0.91563 1.00477 0.92502 0.98015 1.00560 0.93191 0.89541 0.85725 0.92489 0.91413 0.91267 0.91979 0.93946 0.89540 0.90610 0.93826 0.90062 0.90897 0.90744 0.90094 0.93373 0.89953 0.88264 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.98 45.30 29.54 68.60 2.03 47.32 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.53 -31.51 9.39 25.60 0.24 -31.27 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.18 9.96 4.57 85.55 0.39 10.36 16 10 N -0.48 -21.99 6.32 -932.85 -5.89 -27.88 16 11 C -0.01 -0.49 7.55 83.58 0.63 0.14 16 12 C 0.08 2.65 4.65 30.94 0.14 2.80 16 13 O -0.39 -11.84 10.39 -148.98 -1.55 -13.39 16 14 C 0.06 1.24 5.78 71.98 0.42 1.66 16 15 C -0.11 -2.21 5.24 30.59 0.16 -2.05 16 16 C 0.06 0.91 5.03 86.30 0.43 1.34 16 17 N -0.53 -9.09 5.40 -883.03 -4.77 -13.85 16 18 C 0.03 0.46 5.10 86.65 0.44 0.90 16 19 C -0.12 -1.58 7.06 31.80 0.22 -1.36 16 20 C -0.13 -1.43 6.93 31.47 0.22 -1.21 16 21 C 0.03 0.42 6.69 86.45 0.58 1.00 16 22 C -0.01 -0.33 7.52 83.58 0.63 0.29 16 23 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 24 H 0.00 0.11 8.08 -2.38 -0.02 0.09 16 25 H -0.02 -1.42 7.30 -2.39 -0.02 -1.43 16 26 H 0.05 2.17 7.42 -2.39 -0.02 2.15 16 27 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 28 H 0.13 3.19 7.88 -2.39 -0.02 3.17 16 29 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.34 6.79 -2.39 -0.02 1.33 16 33 H 0.04 0.65 7.81 -2.39 -0.02 0.63 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.36 7.66 -2.39 -0.02 1.34 16 36 H 0.04 0.72 8.00 -2.39 -0.02 0.70 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.05 0.60 7.57 -2.39 -0.02 0.58 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 44 H 0.05 2.19 7.91 -2.39 -0.02 2.17 16 Total: -1.00 -68.09 349.35 -3.99 -72.08 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.93 Total: 10.34 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: 4.97 Total: -17.02 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -10.37 Total: -99.33 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -1.55 Total: -13.39 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.09 -3.99 -72.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224749360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.649 kcal (2) G-P(sol) polarization free energy of solvation -68.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds