Wall clock time and date at job start Mon Mar 30 2020 00:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34948 * 126.08393 * 2 1 4 4 H 0.97004 * 125.98767 * 359.95775 * 3 2 1 5 5 N 1.40076 * 108.02438 * 179.97438 * 3 2 1 6 6 C 1.31102 * 108.18628 * 359.97438 * 5 3 2 7 7 O 1.35991 * 125.96032 * 180.02562 * 6 5 3 8 8 C 1.42907 * 116.99760 * 0.02896 * 7 6 5 9 9 H 1.08997 * 109.47192 * 29.99512 * 8 7 6 10 10 C 1.50701 * 109.46880 * 269.99887 * 8 7 6 11 11 H 1.07993 * 120.00090 * 125.31840 * 10 8 7 12 12 C 1.37880 * 119.99607 * 305.32776 * 10 8 7 13 13 N 1.31508 * 120.00318 * 5.91181 * 12 10 8 14 14 Si 1.86810 * 119.99641 * 185.64688 * 12 10 8 15 15 H 1.48501 * 109.47287 * 84.99105 * 14 12 10 16 16 H 1.48497 * 109.46688 * 204.98979 * 14 12 10 17 17 H 1.48498 * 109.46978 * 324.98727 * 14 12 10 18 18 C 1.52992 * 109.47074 * 150.00090 * 8 7 6 19 19 N 1.46907 * 109.47180 * 291.44451 * 18 8 7 20 20 C 1.46903 * 109.46693 * 61.76891 * 19 18 8 21 21 C 1.46898 * 109.47126 * 181.76657 * 19 18 8 22 22 C 1.46898 * 109.47187 * 301.77100 * 19 18 8 23 23 C 1.35278 * 126.08839 * 180.27477 * 2 1 3 24 24 C 1.50697 * 126.06401 * 0.02669 * 23 2 1 25 25 H 1.08999 * 109.46899 * 90.02620 * 1 2 3 26 26 H 1.09001 * 109.46977 * 210.02106 * 1 2 3 27 27 H 1.08995 * 109.47305 * 330.02143 * 1 2 3 28 28 H 0.97008 * 120.00202 * 179.72419 * 13 12 10 29 29 H 1.08998 * 109.47647 * 51.44773 * 18 8 7 30 30 H 1.09004 * 109.47011 * 171.45093 * 18 8 7 31 31 H 1.08998 * 109.46849 * 46.69304 * 20 19 18 32 32 H 1.09002 * 109.46623 * 166.69376 * 20 19 18 33 33 H 1.08998 * 109.46890 * 286.69496 * 20 19 18 34 34 H 1.09003 * 109.46821 * 60.00727 * 21 19 18 35 35 H 1.09005 * 109.46749 * 179.97438 * 21 19 18 36 36 H 1.08997 * 109.47585 * 300.00325 * 21 19 18 37 37 H 1.09000 * 109.47234 * 59.99427 * 22 19 18 38 38 H 1.08995 * 109.47436 * 179.97438 * 22 19 18 39 39 H 1.09004 * 109.47176 * 300.00165 * 22 19 18 40 40 H 1.09000 * 109.47397 * 270.22372 * 24 23 2 41 41 H 1.09001 * 109.47479 * 30.22357 * 24 23 2 42 42 H 1.08999 * 109.47443 * 150.22485 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3018 1.0906 0.0000 4 1 2.0032 2.0135 -0.0006 5 7 3.6336 0.6563 0.0006 6 6 3.6365 -0.6547 0.0015 7 8 4.7390 -1.4508 0.0028 8 6 6.0104 -0.7983 0.0038 9 1 5.9267 0.1596 0.5172 10 6 6.4586 -0.5693 -1.4166 11 1 6.7241 0.4244 -1.7456 12 6 6.5295 -1.6287 -2.2963 13 7 6.0967 -2.8159 -1.9322 14 14 7.2336 -1.3758 -4.0080 15 1 8.7124 -1.5021 -3.9587 16 1 6.6796 -2.4017 -4.9276 17 1 6.8685 -0.0225 -4.4985 18 6 7.0338 -1.6766 0.7263 19 7 6.7079 -1.7320 2.1577 20 6 5.3821 -2.3394 2.3348 21 6 7.7145 -2.5406 2.8581 22 6 6.7010 -0.3713 2.7113 23 6 2.3038 -1.0932 -0.0052 24 6 1.8420 -2.5276 -0.0127 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8901 0.5135 28 1 6.1429 -3.5603 -2.5525 29 1 7.0081 -2.6830 0.3086 30 1 8.0305 -1.2547 0.5967 31 1 5.3112 -3.2407 1.7259 32 1 5.2379 -2.5973 3.3840 33 1 4.6136 -1.6308 2.0258 34 1 8.6982 -2.0899 2.7267 35 1 7.4729 -2.5813 3.9203 36 1 7.7196 -3.5502 2.4473 37 1 5.9541 0.2287 2.1915 38 1 6.4588 -0.4123 3.7732 39 1 7.6847 0.0794 2.5798 40 1 1.7264 -2.8775 1.0131 41 1 0.8856 -2.5987 -0.5307 42 1 2.5798 -3.1443 -0.5259 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226513177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:55 Heat of formation + Delta-G solvation = 138.471393 kcal Electronic energy + Delta-G solvation = -22469.743668 eV Core-core repulsion = 19377.681571 eV Total energy + Delta-G solvation = -3092.062098 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.177 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.30829 -41.87591 -38.52853 -34.56326 -33.53406 -32.42269 -31.30380 -30.36429 -30.20408 -28.75482 -27.69542 -26.23882 -24.99633 -23.27560 -21.60262 -20.18045 -18.95591 -18.57820 -18.29851 -17.88773 -17.78062 -16.85475 -16.24331 -15.83406 -15.13859 -14.96535 -14.81832 -14.65403 -14.31381 -14.12509 -14.01100 -13.89524 -13.74851 -13.63505 -13.56987 -13.37870 -13.29418 -13.01325 -12.67483 -12.59490 -12.41877 -12.09772 -11.72306 -11.32878 -10.80125 -10.78484 -10.05571 -9.28565 -8.79002 -7.62724 -5.82883 0.32883 1.22302 2.04533 2.16605 2.29678 2.31621 2.32806 2.34207 2.35455 2.39458 2.88354 3.10626 3.17076 3.23590 3.44140 3.55027 3.67435 3.69888 3.76293 3.81638 3.85695 4.00688 4.15265 4.20187 4.25967 4.30918 4.42058 4.57411 4.61968 4.78148 4.97228 5.08504 5.12310 5.25401 5.40424 5.56571 5.79624 6.29153 6.36899 6.61782 6.96038 7.18805 7.43822 7.98814 9.39123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.100 3.900 3 N -0.475 5.475 4 H 0.437 0.563 5 N -0.344 5.344 6 C 0.289 3.711 7 O -0.273 6.273 8 C 0.197 3.803 9 H 0.053 0.947 10 C -0.558 4.558 11 H 0.076 0.924 12 C 0.089 3.911 13 N -0.852 5.852 14 Si 0.899 3.101 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.269 1.269 18 C 0.000 4.000 19 N -0.273 5.273 20 C -0.036 4.036 21 C -0.041 4.041 22 C -0.047 4.047 23 C -0.250 4.250 24 C -0.067 4.067 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.275 0.725 29 H 0.145 0.855 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 -0.421 16.633 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.029 4.029 3 N -0.187 5.187 4 H 0.281 0.719 5 N -0.186 5.186 6 C 0.084 3.916 7 O -0.177 6.177 8 C 0.142 3.858 9 H 0.071 0.929 10 C -0.595 4.595 11 H 0.094 0.906 12 C -0.122 4.122 13 N -0.485 5.485 14 Si 0.725 3.275 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.193 1.193 18 C -0.119 4.119 19 N 0.068 4.932 20 C -0.177 4.177 21 C -0.183 4.183 22 C -0.188 4.188 23 C -0.262 4.262 24 C -0.125 4.125 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.118 0.882 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.833 0.009 16.578 16.598 hybrid contribution -0.161 0.040 -1.224 1.235 sum 0.672 0.049 15.353 15.368 Atomic orbital electron populations 1.20468 0.87371 1.03784 1.03582 1.20751 0.94296 0.87085 1.00738 1.45623 1.03283 1.07665 1.62145 0.71933 1.77458 0.96389 1.11185 1.33518 1.20400 0.88270 0.88210 0.94744 1.86557 1.11886 1.31850 1.87419 1.20194 0.78944 0.89115 0.97577 0.92882 1.21146 1.49067 0.95812 0.93498 0.90597 1.25057 0.92648 0.94876 0.99593 1.69831 1.40293 1.00970 1.37397 0.86435 0.79464 0.79209 0.82398 1.19728 1.20377 1.19299 1.24893 1.03779 1.10436 0.72746 1.46425 1.15052 1.14100 1.17594 1.24219 0.83051 1.04755 1.05697 1.24014 0.94034 0.99654 1.00565 1.24080 1.09061 0.82706 1.02994 1.19230 0.89641 0.96364 1.20976 1.19971 1.00941 0.90861 1.00696 0.90051 0.89563 0.91073 0.91467 0.83674 0.85723 0.85754 0.88189 0.85909 0.86810 0.87215 0.86502 0.86075 0.87238 0.86590 0.93020 0.92570 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.14 10.03 36.01 0.36 0.50 16 2 C 0.10 0.20 7.20 -82.28 -0.59 -0.39 16 3 N -0.47 -1.18 7.35 33.47 0.25 -0.93 16 4 H 0.44 -0.19 8.96 -182.61 -1.64 -1.82 16 5 N -0.34 -1.79 11.63 30.56 0.36 -1.43 16 6 C 0.29 1.44 6.87 -17.09 -0.12 1.32 16 7 O -0.27 -1.12 6.10 -19.71 -0.12 -1.24 16 8 C 0.20 0.55 1.77 -27.89 -0.05 0.50 16 9 H 0.05 0.10 4.96 -51.93 -0.26 -0.16 16 10 C -0.56 -4.88 8.86 -34.44 -0.31 -5.18 16 11 H 0.08 0.80 7.82 -52.49 -0.41 0.39 16 12 C 0.09 0.90 5.24 -17.82 -0.09 0.81 16 13 N -0.85 -8.50 11.26 55.43 0.62 -7.88 16 14 Si 0.90 9.10 29.54 -169.99 -5.02 4.08 16 15 H -0.27 -2.70 7.11 56.52 0.40 -2.30 16 16 H -0.28 -3.14 7.11 56.52 0.40 -2.74 16 17 H -0.27 -3.06 7.11 56.52 0.40 -2.65 16 18 C 0.00 0.00 3.52 -3.82 -0.01 -0.01 16 19 N -0.27 2.40 0.05 -395.62 -0.02 2.38 16 20 C -0.04 0.28 7.01 60.07 0.42 0.70 16 21 C -0.04 0.49 7.98 60.06 0.48 0.96 16 22 C -0.05 0.46 7.60 60.06 0.46 0.91 16 23 C -0.25 -0.93 6.11 -104.91 -0.64 -1.57 16 24 C -0.07 -0.13 9.97 36.00 0.36 0.23 16 25 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 26 H 0.09 -0.20 7.79 -51.93 -0.40 -0.61 16 27 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 28 H 0.28 2.89 8.31 -40.82 -0.34 2.55 16 29 H 0.15 -0.08 6.82 -51.93 -0.35 -0.43 16 30 H 0.12 -0.51 8.12 -51.93 -0.42 -0.93 16 31 H 0.12 -0.75 7.84 -51.93 -0.41 -1.16 16 32 H 0.10 -1.09 7.92 -51.93 -0.41 -1.50 16 33 H 0.12 -0.58 5.23 -51.93 -0.27 -0.85 16 34 H 0.11 -1.43 8.14 -51.93 -0.42 -1.85 16 35 H 0.11 -1.51 8.04 -51.93 -0.42 -1.93 16 36 H 0.12 -1.34 8.14 -51.93 -0.42 -1.76 16 37 H 0.12 -0.83 5.84 -51.93 -0.30 -1.13 16 38 H 0.11 -1.34 8.14 -51.93 -0.42 -1.76 16 39 H 0.12 -1.26 8.14 -51.93 -0.42 -1.68 16 40 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 41 H 0.06 0.07 7.79 -51.93 -0.40 -0.34 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 330.00 15.07 4.97 4.97 Total: 0.00 -18.77 330.00 -6.92 -25.68 By element: Atomic # 1 Polarization: -16.20 SS G_CDS: -8.22 Total: -24.41 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 0.26 Total: -1.22 kcal Atomic # 7 Polarization: -9.07 SS G_CDS: 1.21 Total: -7.86 kcal Atomic # 8 Polarization: -1.12 SS G_CDS: -0.12 Total: -1.24 kcal Atomic # 14 Polarization: 9.10 SS G_CDS: -5.02 Total: 4.08 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -18.77 -6.92 -25.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226513177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.152 kcal (2) G-P(sol) polarization free energy of solvation -18.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds