Wall clock time and date at job start Mon Mar 30 2020 00:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34948 * 126.08393 * 2 1 4 4 H 0.97004 * 125.98767 * 359.95775 * 3 2 1 5 5 N 1.40076 * 108.02438 * 179.97438 * 3 2 1 6 6 C 1.31102 * 108.18628 * 359.97438 * 5 3 2 7 7 O 1.35991 * 125.96032 * 180.02562 * 6 5 3 8 8 C 1.42907 * 116.99760 * 0.02896 * 7 6 5 9 9 H 1.08997 * 109.47192 * 29.99512 * 8 7 6 10 10 C 1.50701 * 109.46880 * 269.99887 * 8 7 6 11 11 H 1.07993 * 120.00090 * 125.31840 * 10 8 7 12 12 C 1.37880 * 119.99607 * 305.32776 * 10 8 7 13 13 N 1.31508 * 120.00318 * 5.91181 * 12 10 8 14 14 Si 1.86810 * 119.99641 * 185.64688 * 12 10 8 15 15 H 1.48501 * 109.47287 * 84.99105 * 14 12 10 16 16 H 1.48497 * 109.46688 * 204.98979 * 14 12 10 17 17 H 1.48498 * 109.46978 * 324.98727 * 14 12 10 18 18 C 1.52992 * 109.47074 * 150.00090 * 8 7 6 19 19 N 1.46907 * 109.47180 * 291.44451 * 18 8 7 20 20 C 1.46903 * 109.46693 * 61.76891 * 19 18 8 21 21 C 1.46898 * 109.47126 * 181.76657 * 19 18 8 22 22 C 1.46898 * 109.47187 * 301.77100 * 19 18 8 23 23 C 1.35278 * 126.08839 * 180.27477 * 2 1 3 24 24 C 1.50697 * 126.06401 * 0.02669 * 23 2 1 25 25 H 1.08999 * 109.46899 * 90.02620 * 1 2 3 26 26 H 1.09001 * 109.46977 * 210.02106 * 1 2 3 27 27 H 1.08995 * 109.47305 * 330.02143 * 1 2 3 28 28 H 0.97008 * 120.00202 * 179.72419 * 13 12 10 29 29 H 1.08998 * 109.47647 * 51.44773 * 18 8 7 30 30 H 1.09004 * 109.47011 * 171.45093 * 18 8 7 31 31 H 1.08998 * 109.46849 * 46.69304 * 20 19 18 32 32 H 1.09002 * 109.46623 * 166.69376 * 20 19 18 33 33 H 1.08998 * 109.46890 * 286.69496 * 20 19 18 34 34 H 1.09003 * 109.46821 * 60.00727 * 21 19 18 35 35 H 1.09005 * 109.46749 * 179.97438 * 21 19 18 36 36 H 1.08997 * 109.47585 * 300.00325 * 21 19 18 37 37 H 1.09000 * 109.47234 * 59.99427 * 22 19 18 38 38 H 1.08995 * 109.47436 * 179.97438 * 22 19 18 39 39 H 1.09004 * 109.47176 * 300.00165 * 22 19 18 40 40 H 1.09000 * 109.47397 * 270.22372 * 24 23 2 41 41 H 1.09001 * 109.47479 * 30.22357 * 24 23 2 42 42 H 1.08999 * 109.47443 * 150.22485 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3018 1.0906 0.0000 4 1 2.0032 2.0135 -0.0006 5 7 3.6336 0.6563 0.0006 6 6 3.6365 -0.6547 0.0015 7 8 4.7390 -1.4508 0.0028 8 6 6.0104 -0.7983 0.0038 9 1 5.9267 0.1596 0.5172 10 6 6.4586 -0.5693 -1.4166 11 1 6.7241 0.4244 -1.7456 12 6 6.5295 -1.6287 -2.2963 13 7 6.0967 -2.8159 -1.9322 14 14 7.2336 -1.3758 -4.0080 15 1 8.7124 -1.5021 -3.9587 16 1 6.6796 -2.4017 -4.9276 17 1 6.8685 -0.0225 -4.4985 18 6 7.0338 -1.6766 0.7263 19 7 6.7079 -1.7320 2.1577 20 6 5.3821 -2.3394 2.3348 21 6 7.7145 -2.5406 2.8581 22 6 6.7010 -0.3713 2.7113 23 6 2.3038 -1.0932 -0.0052 24 6 1.8420 -2.5276 -0.0127 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8901 0.5135 28 1 6.1429 -3.5603 -2.5525 29 1 7.0081 -2.6830 0.3086 30 1 8.0305 -1.2547 0.5967 31 1 5.3112 -3.2407 1.7259 32 1 5.2379 -2.5973 3.3840 33 1 4.6136 -1.6308 2.0258 34 1 8.6982 -2.0899 2.7267 35 1 7.4729 -2.5813 3.9203 36 1 7.7196 -3.5502 2.4473 37 1 5.9541 0.2287 2.1915 38 1 6.4588 -0.4123 3.7732 39 1 7.6847 0.0794 2.5798 40 1 1.7264 -2.8775 1.0131 41 1 0.8856 -2.5987 -0.5307 42 1 2.5798 -3.1443 -0.5259 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226513177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:54 Heat of formation + Delta-G solvation = 130.013529 kcal Electronic energy + Delta-G solvation = -22470.110429 eV Core-core repulsion = 19377.681571 eV Total energy + Delta-G solvation = -3092.428858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.177 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.82336 -42.02557 -38.72011 -35.11307 -33.68387 -32.64742 -31.35874 -29.60939 -29.49119 -28.84745 -27.84936 -26.40314 -24.89874 -23.15450 -21.84806 -20.35742 -18.93059 -18.35431 -18.09281 -17.80415 -17.42576 -16.96986 -16.62062 -16.35543 -15.10855 -14.98057 -14.43979 -14.39874 -14.18570 -13.78474 -13.65765 -13.52888 -13.38431 -13.34109 -13.25292 -13.23904 -13.14680 -12.95451 -12.94237 -12.89796 -12.78631 -12.61429 -12.42764 -11.67611 -11.28912 -11.07868 -10.82339 -9.55109 -9.02397 -8.37150 -6.54110 0.96048 1.03504 1.28625 1.40738 1.44870 1.88711 2.05484 2.27206 2.64761 2.80512 3.02203 3.06269 3.23387 3.87712 3.95522 4.05820 4.11728 4.24687 4.26694 4.31138 4.33513 4.41660 4.45104 4.55504 4.58182 4.69967 4.73158 4.77193 4.79407 4.88723 5.00915 5.03523 5.12570 5.16011 5.26542 5.35659 5.56198 5.62487 5.81627 6.39059 6.54125 6.80787 7.05589 7.27655 8.61143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.109 3.891 3 N -0.472 5.472 4 H 0.448 0.552 5 N -0.376 5.376 6 C 0.273 3.727 7 O -0.273 6.273 8 C 0.194 3.806 9 H 0.061 0.939 10 C -0.568 4.568 11 H 0.048 0.952 12 C 0.071 3.929 13 N -0.857 5.857 14 Si 0.916 3.084 15 H -0.266 1.266 16 H -0.295 1.295 17 H -0.291 1.291 18 C 0.021 3.979 19 N -0.260 5.260 20 C -0.034 4.034 21 C -0.043 4.043 22 C -0.049 4.049 23 C -0.280 4.280 24 C -0.058 4.058 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.267 0.733 29 H 0.124 0.876 30 H 0.140 0.860 31 H 0.105 0.895 32 H 0.143 0.857 33 H 0.092 0.908 34 H 0.127 0.873 35 H 0.143 0.857 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.146 0.854 39 H 0.131 0.869 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 -0.581 19.662 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.020 4.020 3 N -0.186 5.186 4 H 0.294 0.706 5 N -0.218 5.218 6 C 0.068 3.932 7 O -0.176 6.176 8 C 0.139 3.861 9 H 0.078 0.922 10 C -0.606 4.606 11 H 0.066 0.934 12 C -0.137 4.137 13 N -0.491 5.491 14 Si 0.745 3.255 15 H -0.191 1.191 16 H -0.222 1.222 17 H -0.217 1.217 18 C -0.100 4.100 19 N 0.083 4.917 20 C -0.176 4.176 21 C -0.183 4.183 22 C -0.190 4.190 23 C -0.291 4.291 24 C -0.116 4.116 25 H 0.103 0.897 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.142 0.858 30 H 0.157 0.843 31 H 0.123 0.877 32 H 0.161 0.839 33 H 0.111 0.889 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.131 0.869 37 H 0.106 0.894 38 H 0.164 0.836 39 H 0.150 0.850 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.554 -0.143 19.621 19.629 hybrid contribution -0.134 0.211 -2.127 2.141 sum 0.420 0.068 17.494 17.499 Atomic orbital electron populations 1.20603 0.84580 1.05490 1.04267 1.21278 0.95831 0.86255 0.98620 1.45679 1.02638 1.08545 1.61690 0.70641 1.77365 0.98116 1.11583 1.34742 1.20723 0.89074 0.88406 0.94951 1.86567 1.12017 1.31620 1.87435 1.20198 0.79195 0.91494 0.95227 0.92178 1.21342 1.48142 0.94065 0.97018 0.93402 1.25164 0.93626 0.95471 0.99470 1.69871 1.41906 1.00618 1.36751 0.86247 0.79681 0.77000 0.82596 1.19070 1.22164 1.21740 1.24066 1.01999 1.07673 0.76221 1.46015 1.15632 1.15534 1.14550 1.24156 0.82621 1.02923 1.07899 1.24258 0.93467 0.98831 1.01758 1.24219 1.08979 0.81356 1.04458 1.19582 0.89503 0.97666 1.22391 1.19903 1.00315 0.89602 1.01777 0.89685 0.88274 0.88982 0.92331 0.85764 0.84262 0.87678 0.83869 0.88934 0.85494 0.83876 0.86855 0.89356 0.83594 0.85048 0.90912 0.91654 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.39 10.03 71.24 0.71 1.10 16 2 C 0.11 0.45 7.20 41.40 0.30 0.75 16 3 N -0.47 -2.68 7.35 -48.02 -0.35 -3.03 16 4 H 0.45 -0.20 8.96 -213.33 -1.91 -2.11 16 5 N -0.38 -4.58 11.63 -170.49 -1.98 -6.56 16 6 C 0.27 3.24 6.87 85.30 0.59 3.82 16 7 O -0.27 -2.82 6.10 -93.45 -0.57 -3.39 16 8 C 0.19 1.46 1.77 29.85 0.05 1.51 16 9 H 0.06 0.34 4.96 -2.39 -0.01 0.33 16 10 C -0.57 -11.51 8.86 25.60 0.23 -11.28 16 11 H 0.05 1.18 7.82 -2.91 -0.02 1.16 16 12 C 0.07 1.63 5.24 84.66 0.44 2.08 16 13 N -0.86 -19.30 11.26 21.45 0.24 -19.06 16 14 Si 0.92 21.06 29.54 68.60 2.03 23.08 16 15 H -0.27 -5.70 7.11 99.48 0.71 -4.99 16 16 H -0.30 -7.50 7.11 99.48 0.71 -6.80 16 17 H -0.29 -7.64 7.11 99.48 0.71 -6.93 16 18 C 0.02 -0.11 3.52 86.30 0.30 0.19 16 19 N -0.26 4.82 0.05 ******* -0.07 4.76 16 20 C -0.03 0.54 7.01 127.69 0.89 1.44 16 21 C -0.04 1.13 7.98 127.69 1.02 2.15 16 22 C -0.05 1.03 7.60 127.69 0.97 2.00 16 23 C -0.28 -2.36 6.11 -20.05 -0.12 -2.48 16 24 C -0.06 -0.27 9.97 71.23 0.71 0.44 16 25 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.10 -0.64 7.79 -2.39 -0.02 -0.66 16 27 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 28 H 0.27 6.32 8.31 -92.70 -0.77 5.55 16 29 H 0.12 0.02 6.82 -2.39 -0.02 0.00 16 30 H 0.14 -1.15 8.12 -2.39 -0.02 -1.17 16 31 H 0.10 -1.19 7.84 -2.39 -0.02 -1.20 16 32 H 0.14 -3.51 7.92 -2.39 -0.02 -3.53 16 33 H 0.09 -0.79 5.23 -2.39 -0.01 -0.80 16 34 H 0.13 -3.56 8.14 -2.39 -0.02 -3.58 16 35 H 0.14 -4.58 8.04 -2.38 -0.02 -4.60 16 36 H 0.11 -2.78 8.14 -2.39 -0.02 -2.80 16 37 H 0.09 -1.16 5.84 -2.39 -0.01 -1.18 16 38 H 0.15 -4.06 8.14 -2.39 -0.02 -4.08 16 39 H 0.13 -3.11 8.14 -2.38 -0.02 -3.13 16 40 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.06 0.16 7.79 -2.39 -0.02 0.14 16 42 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 Total: 0.00 -48.09 330.00 4.49 -43.61 By element: Atomic # 1 Polarization: -40.22 SS G_CDS: -0.91 Total: -41.13 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 6.10 Total: 1.72 kcal Atomic # 7 Polarization: -21.73 SS G_CDS: -2.16 Total: -23.89 kcal Atomic # 8 Polarization: -2.82 SS G_CDS: -0.57 Total: -3.39 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: 2.03 Total: 23.08 kcal Total: -48.09 4.49 -43.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226513177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.621 kcal (2) G-P(sol) polarization free energy of solvation -48.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds