Wall clock time and date at job start Mon Mar 30 2020 00:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39823 * 125.85718 * 2 1 4 4 C 1.35946 * 107.83410 * 180.02562 * 3 2 1 5 5 O 1.35759 * 126.19475 * 180.02562 * 4 3 2 6 6 C 1.42893 * 116.99806 * 5.92193 * 5 4 3 7 7 H 1.08997 * 109.47722 * 35.48030 * 6 5 4 8 8 C 1.50707 * 109.47230 * 275.48010 * 6 5 4 9 9 H 1.08000 * 119.99879 * 120.00108 * 8 6 5 10 10 C 1.37873 * 119.99867 * 299.99906 * 8 6 5 11 11 N 1.31515 * 120.00450 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99754 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47237 * 60.00487 * 12 10 8 14 14 H 1.48506 * 109.47097 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47290 * 300.00186 * 12 10 8 16 16 C 1.53007 * 109.47287 * 155.48232 * 6 5 4 17 17 N 1.46900 * 109.46570 * 293.99164 * 16 6 5 18 18 C 1.46894 * 109.47744 * 64.66264 * 17 16 6 19 19 C 1.46897 * 109.46840 * 184.66227 * 17 16 6 20 20 C 1.46904 * 109.46952 * 304.65788 * 17 16 6 21 21 N 1.35137 * 107.61276 * 0.26581 * 4 3 2 22 22 C 1.46503 * 126.03755 * 179.73147 * 21 4 3 23 23 N 1.30831 * 125.85756 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47716 * 89.99636 * 1 2 3 25 25 H 1.09003 * 109.47269 * 209.99524 * 1 2 3 26 26 H 1.09007 * 109.47080 * 329.99359 * 1 2 3 27 27 H 1.08000 * 126.08704 * 0.02562 * 3 2 1 28 28 H 0.96992 * 120.00531 * 179.97438 * 11 10 8 29 29 H 1.08996 * 109.47406 * 173.98806 * 16 6 5 30 30 H 1.09000 * 109.46676 * 53.98349 * 16 6 5 31 31 H 1.09006 * 109.47068 * 53.22761 * 18 17 16 32 32 H 1.08999 * 109.47237 * 173.23246 * 18 17 16 33 33 H 1.09004 * 109.46724 * 293.23483 * 18 17 16 34 34 H 1.09008 * 109.47357 * 59.99644 * 19 17 16 35 35 H 1.08996 * 109.47459 * 179.97438 * 19 17 16 36 36 H 1.09003 * 109.47192 * 300.00144 * 19 17 16 37 37 H 1.08992 * 109.47056 * 60.00557 * 20 17 16 38 38 H 1.08998 * 109.46679 * 180.02562 * 20 17 16 39 39 H 1.08998 * 109.47055 * 300.00282 * 20 17 16 40 40 H 1.08998 * 109.46689 * 94.81646 * 22 21 4 41 41 H 1.08998 * 109.47507 * 214.81193 * 22 21 4 42 42 H 1.08992 * 109.46934 * 334.81437 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3260 1.1332 0.0000 4 6 3.6188 0.7126 -0.0006 5 8 4.7201 1.5064 -0.0003 6 6 4.5059 2.9130 0.1321 7 1 3.6618 3.0909 0.7983 8 6 4.2111 3.5058 -1.2217 9 1 3.2724 4.0102 -1.3975 10 6 5.1396 3.4043 -2.2358 11 7 6.2825 2.7897 -2.0219 12 14 4.7738 4.1386 -3.9140 13 1 4.5508 5.6003 -3.7769 14 1 5.9238 3.8959 -4.8218 15 1 3.5560 3.5028 -4.4777 16 6 5.7609 3.5676 0.7131 17 7 5.9668 3.0959 2.0890 18 6 6.2431 1.6532 2.0760 19 6 7.1055 3.8071 2.6851 20 6 4.7577 3.3558 2.8818 21 7 3.6091 -0.6387 -0.0069 22 6 4.7876 -1.5090 -0.0153 23 7 2.2734 -1.0604 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5140 27 1 1.9913 2.1601 0.0004 28 1 6.9356 2.7180 -2.7354 29 1 5.6382 4.6506 0.7148 30 1 6.6248 3.3007 0.1044 31 1 7.0666 1.4471 1.3921 32 1 6.5138 1.3260 3.0798 33 1 5.3539 1.1160 1.7461 34 1 6.9006 4.8777 2.6949 35 1 7.2581 3.4575 3.7062 36 1 8.0027 3.6143 2.0968 37 1 3.9129 2.8281 2.4395 38 1 4.9107 3.0062 3.9028 39 1 4.5528 4.4263 2.8915 40 1 5.0322 -1.7991 1.0066 41 1 4.5765 -2.4008 -0.6054 42 1 5.6306 -0.9748 -0.4531 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226836927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:45 Heat of formation + Delta-G solvation = 150.789309 kcal Electronic energy + Delta-G solvation = -22539.150254 eV Core-core repulsion = 19447.622302 eV Total energy + Delta-G solvation = -3091.527953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.177 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.44319 -41.80302 -38.72842 -34.95020 -34.28688 -31.77413 -30.55989 -30.42658 -30.20198 -29.38310 -27.92857 -26.09465 -25.11038 -23.21840 -21.34841 -20.56603 -19.14196 -18.80341 -18.53444 -18.17653 -17.53786 -16.72208 -16.29900 -15.97934 -15.29837 -15.06623 -14.97801 -14.71507 -14.29049 -14.21416 -14.18452 -14.04255 -13.92688 -13.82770 -13.72520 -13.62931 -13.24408 -13.00278 -12.94623 -12.49671 -12.44112 -12.17820 -11.77530 -11.26684 -11.10000 -10.86665 -10.23758 -9.42465 -8.72370 -7.86581 -6.07260 0.23017 1.36920 1.50095 2.08382 2.19784 2.22495 2.23058 2.25580 2.27665 2.30421 2.82881 2.96251 3.08437 3.14070 3.34988 3.43226 3.55099 3.58751 3.68135 3.70007 3.73369 3.89206 4.03667 4.10382 4.22108 4.35364 4.40324 4.41445 4.58516 4.73618 4.93910 4.97558 5.11037 5.18468 5.22583 5.43841 6.00338 6.02733 6.14954 6.17953 6.83305 7.09460 7.30235 7.77758 9.16009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.094 3.906 3 C -0.345 4.345 4 C 0.308 3.692 5 O -0.308 6.308 6 C 0.206 3.794 7 H 0.051 0.949 8 C -0.558 4.558 9 H 0.081 0.919 10 C 0.092 3.908 11 N -0.864 5.864 12 Si 0.905 3.095 13 H -0.267 1.267 14 H -0.279 1.279 15 H -0.267 1.267 16 C 0.000 4.000 17 N -0.273 5.273 18 C -0.043 4.043 19 C -0.041 4.041 20 C -0.048 4.048 21 N -0.382 5.382 22 C 0.106 3.894 23 N -0.305 5.305 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.147 0.853 28 H 0.280 0.720 29 H 0.127 0.873 30 H 0.160 0.840 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 2.791 15.894 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 C -0.374 4.374 4 C 0.138 3.862 5 O -0.216 6.216 6 C 0.152 3.848 7 H 0.069 0.931 8 C -0.594 4.594 9 H 0.099 0.901 10 C -0.119 4.119 11 N -0.498 5.498 12 Si 0.730 3.270 13 H -0.192 1.192 14 H -0.204 1.204 15 H -0.192 1.192 16 C -0.119 4.119 17 N 0.069 4.931 18 C -0.184 4.184 19 C -0.182 4.182 20 C -0.190 4.190 21 N -0.173 5.173 22 C -0.036 4.036 23 N -0.131 5.131 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.165 0.835 28 H 0.090 0.910 29 H 0.145 0.855 30 H 0.177 0.823 31 H 0.138 0.862 32 H 0.119 0.881 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.372 1.431 15.795 16.745 hybrid contribution -0.016 1.268 -1.170 1.726 sum 5.356 2.699 14.625 15.807 Atomic orbital electron populations 1.20171 0.86981 1.02937 1.03050 1.22034 0.96674 0.90791 0.97712 1.20868 0.90409 0.99941 1.26216 1.18871 0.88179 0.83214 0.95983 1.86011 1.28075 1.20622 1.86935 1.20327 0.90154 0.76116 0.98206 0.93106 1.21227 1.04754 1.39371 0.94074 0.90133 1.25055 0.94167 0.92405 1.00227 1.69590 1.07151 1.37884 1.35150 0.86349 0.79245 0.79966 0.81391 1.19205 1.20371 1.19165 1.24875 1.08314 1.02674 0.76011 1.46388 1.13982 1.15426 1.17321 1.24328 1.09559 0.78089 1.06459 1.24008 0.90386 1.01185 1.02655 1.24091 0.88688 1.07705 0.98490 1.48259 1.05928 1.01938 1.61204 1.21752 0.84399 0.94909 1.02513 1.77454 0.84739 1.21348 1.29520 0.90503 0.91135 0.90584 0.83550 0.91005 0.85544 0.82291 0.86230 0.88148 0.85265 0.86722 0.87178 0.86485 0.86187 0.87142 0.86469 0.91631 0.89719 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.14 10.44 36.01 0.38 0.24 16 2 C 0.09 0.48 7.21 -82.43 -0.59 -0.12 16 3 C -0.34 -1.61 9.42 -39.81 -0.37 -1.99 16 4 C 0.31 1.29 7.10 -16.92 -0.12 1.17 16 5 O -0.31 -0.66 6.03 -18.99 -0.11 -0.78 16 6 C 0.21 0.13 1.43 -27.88 -0.04 0.09 16 7 H 0.05 -0.07 4.62 -51.93 -0.24 -0.30 16 8 C -0.56 -3.59 8.52 -34.44 -0.29 -3.88 16 9 H 0.08 0.62 7.81 -52.49 -0.41 0.21 16 10 C 0.09 0.77 5.24 -17.82 -0.09 0.67 16 11 N -0.86 -6.93 10.94 55.43 0.61 -6.32 16 12 Si 0.90 7.98 29.54 -169.99 -5.02 2.96 16 13 H -0.27 -2.35 7.11 56.52 0.40 -1.95 16 14 H -0.28 -2.73 7.11 56.52 0.40 -2.33 16 15 H -0.27 -2.78 7.11 56.52 0.40 -2.38 16 16 C 0.00 0.00 3.55 -3.82 -0.01 -0.01 16 17 N -0.27 2.74 0.05 -395.62 -0.02 2.72 16 18 C -0.04 0.39 7.21 60.06 0.43 0.82 16 19 C -0.04 0.52 8.01 60.06 0.48 1.00 16 20 C -0.05 0.53 7.54 60.07 0.45 0.99 16 21 N -0.38 -1.74 4.02 -68.28 -0.27 -2.02 16 22 C 0.11 0.09 11.44 59.85 0.68 0.78 16 23 N -0.30 -1.96 12.57 33.66 0.42 -1.54 16 24 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 25 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 26 H 0.08 0.00 8.14 -51.92 -0.42 -0.42 16 27 H 0.15 0.56 7.16 -52.49 -0.38 0.19 16 28 H 0.28 2.48 8.31 -40.82 -0.34 2.14 16 29 H 0.13 -0.70 8.09 -51.93 -0.42 -1.12 16 30 H 0.16 -0.25 6.12 -51.93 -0.32 -0.57 16 31 H 0.12 -0.94 7.99 -51.93 -0.41 -1.35 16 32 H 0.10 -1.18 8.05 -51.93 -0.42 -1.60 16 33 H 0.13 -0.75 5.01 -51.93 -0.26 -1.01 16 34 H 0.11 -1.55 8.12 -51.92 -0.42 -1.97 16 35 H 0.11 -1.60 8.10 -51.93 -0.42 -2.02 16 36 H 0.12 -1.44 8.14 -51.93 -0.42 -1.86 16 37 H 0.12 -1.05 5.89 -51.93 -0.31 -1.36 16 38 H 0.11 -1.47 8.14 -51.93 -0.42 -1.89 16 39 H 0.12 -1.44 8.14 -51.93 -0.42 -1.86 16 40 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 41 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 42 H 0.09 0.04 8.04 -51.93 -0.42 -0.37 16 LS Contribution 330.02 15.07 4.97 4.97 Total: 0.00 -18.11 330.02 -5.47 -23.58 By element: Atomic # 1 Polarization: -16.39 SS G_CDS: -6.94 Total: -23.33 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 0.90 Total: -0.24 kcal Atomic # 7 Polarization: -7.90 SS G_CDS: 0.74 Total: -7.16 kcal Atomic # 8 Polarization: -0.66 SS G_CDS: -0.11 Total: -0.78 kcal Atomic # 14 Polarization: 7.98 SS G_CDS: -5.02 Total: 2.96 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -18.11 -5.47 -23.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226836927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.370 kcal (2) G-P(sol) polarization free energy of solvation -18.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds