Wall clock time and date at job start Mon Mar 30 2020 00:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39823 * 125.85718 * 2 1 4 4 C 1.35946 * 107.83410 * 180.02562 * 3 2 1 5 5 O 1.35759 * 126.19475 * 180.02562 * 4 3 2 6 6 C 1.42893 * 116.99806 * 5.92193 * 5 4 3 7 7 H 1.08997 * 109.47722 * 35.48030 * 6 5 4 8 8 C 1.50707 * 109.47230 * 275.48010 * 6 5 4 9 9 H 1.08000 * 119.99879 * 120.00108 * 8 6 5 10 10 C 1.37873 * 119.99867 * 299.99906 * 8 6 5 11 11 N 1.31515 * 120.00450 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99754 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47237 * 60.00487 * 12 10 8 14 14 H 1.48506 * 109.47097 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47290 * 300.00186 * 12 10 8 16 16 C 1.53007 * 109.47287 * 155.48232 * 6 5 4 17 17 N 1.46900 * 109.46570 * 293.99164 * 16 6 5 18 18 C 1.46894 * 109.47744 * 64.66264 * 17 16 6 19 19 C 1.46897 * 109.46840 * 184.66227 * 17 16 6 20 20 C 1.46904 * 109.46952 * 304.65788 * 17 16 6 21 21 N 1.35137 * 107.61276 * 0.26581 * 4 3 2 22 22 C 1.46503 * 126.03755 * 179.73147 * 21 4 3 23 23 N 1.30831 * 125.85756 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47716 * 89.99636 * 1 2 3 25 25 H 1.09003 * 109.47269 * 209.99524 * 1 2 3 26 26 H 1.09007 * 109.47080 * 329.99359 * 1 2 3 27 27 H 1.08000 * 126.08704 * 0.02562 * 3 2 1 28 28 H 0.96992 * 120.00531 * 179.97438 * 11 10 8 29 29 H 1.08996 * 109.47406 * 173.98806 * 16 6 5 30 30 H 1.09000 * 109.46676 * 53.98349 * 16 6 5 31 31 H 1.09006 * 109.47068 * 53.22761 * 18 17 16 32 32 H 1.08999 * 109.47237 * 173.23246 * 18 17 16 33 33 H 1.09004 * 109.46724 * 293.23483 * 18 17 16 34 34 H 1.09008 * 109.47357 * 59.99644 * 19 17 16 35 35 H 1.08996 * 109.47459 * 179.97438 * 19 17 16 36 36 H 1.09003 * 109.47192 * 300.00144 * 19 17 16 37 37 H 1.08992 * 109.47056 * 60.00557 * 20 17 16 38 38 H 1.08998 * 109.46679 * 180.02562 * 20 17 16 39 39 H 1.08998 * 109.47055 * 300.00282 * 20 17 16 40 40 H 1.08998 * 109.46689 * 94.81646 * 22 21 4 41 41 H 1.08998 * 109.47507 * 214.81193 * 22 21 4 42 42 H 1.08992 * 109.46934 * 334.81437 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3260 1.1332 0.0000 4 6 3.6188 0.7126 -0.0006 5 8 4.7201 1.5064 -0.0003 6 6 4.5059 2.9130 0.1321 7 1 3.6618 3.0909 0.7983 8 6 4.2111 3.5058 -1.2217 9 1 3.2724 4.0102 -1.3975 10 6 5.1396 3.4043 -2.2358 11 7 6.2825 2.7897 -2.0219 12 14 4.7738 4.1386 -3.9140 13 1 4.5508 5.6003 -3.7769 14 1 5.9238 3.8959 -4.8218 15 1 3.5560 3.5028 -4.4777 16 6 5.7609 3.5676 0.7131 17 7 5.9668 3.0959 2.0890 18 6 6.2431 1.6532 2.0760 19 6 7.1055 3.8071 2.6851 20 6 4.7577 3.3558 2.8818 21 7 3.6091 -0.6387 -0.0069 22 6 4.7876 -1.5090 -0.0153 23 7 2.2734 -1.0604 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5140 27 1 1.9913 2.1601 0.0004 28 1 6.9356 2.7180 -2.7354 29 1 5.6382 4.6506 0.7148 30 1 6.6248 3.3007 0.1044 31 1 7.0666 1.4471 1.3921 32 1 6.5138 1.3260 3.0798 33 1 5.3539 1.1160 1.7461 34 1 6.9006 4.8777 2.6949 35 1 7.2581 3.4575 3.7062 36 1 8.0027 3.6143 2.0968 37 1 3.9129 2.8281 2.4395 38 1 4.9107 3.0062 3.9028 39 1 4.5528 4.4263 2.8915 40 1 5.0322 -1.7991 1.0066 41 1 4.5765 -2.4008 -0.6054 42 1 5.6306 -0.9748 -0.4531 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226836927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:44 Heat of formation + Delta-G solvation = 144.599184 kcal Electronic energy + Delta-G solvation = -22539.418678 eV Core-core repulsion = 19447.622302 eV Total energy + Delta-G solvation = -3091.796377 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.177 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.87835 -41.99103 -38.85923 -35.31097 -34.59155 -31.75920 -30.57640 -29.80167 -29.52966 -29.41028 -27.92465 -26.30430 -24.84973 -23.01485 -21.59303 -20.80704 -19.17978 -18.63913 -17.89154 -17.73165 -17.45612 -16.83397 -16.63702 -16.31082 -15.42640 -15.06424 -14.49283 -14.32568 -14.29895 -14.14371 -13.88822 -13.66689 -13.43664 -13.30187 -13.24025 -13.21172 -13.09322 -13.04739 -12.99263 -12.93719 -12.80929 -12.63454 -12.35925 -11.47686 -11.38778 -11.23178 -10.88607 -9.69640 -9.05581 -8.45929 -6.61121 0.97551 1.06768 1.24720 1.36337 1.40669 1.48364 1.93805 2.24744 2.60284 2.80829 3.03342 3.08709 3.24656 3.70069 3.90240 4.08165 4.11745 4.22417 4.27670 4.33210 4.35720 4.41128 4.45374 4.46908 4.58849 4.62873 4.67836 4.76130 4.77346 4.80935 4.84082 4.88716 4.92448 5.03364 5.15181 5.25196 5.53678 5.72324 5.78365 5.88113 6.41088 6.68178 6.99053 7.21896 8.52531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.083 3.917 3 C -0.361 4.361 4 C 0.307 3.693 5 O -0.298 6.298 6 C 0.201 3.799 7 H 0.072 0.928 8 C -0.562 4.562 9 H 0.061 0.939 10 C 0.074 3.926 11 N -0.865 5.865 12 Si 0.915 3.085 13 H -0.266 1.266 14 H -0.294 1.294 15 H -0.295 1.295 16 C 0.019 3.981 17 N -0.259 5.259 18 C -0.043 4.043 19 C -0.043 4.043 20 C -0.053 4.053 21 N -0.388 5.388 22 C 0.102 3.898 23 N -0.339 5.339 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.149 0.851 28 H 0.269 0.731 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.143 0.857 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.544 3.307 18.994 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.083 4.083 3 C -0.391 4.391 4 C 0.136 3.864 5 O -0.206 6.206 6 C 0.146 3.854 7 H 0.090 0.910 8 C -0.599 4.599 9 H 0.079 0.921 10 C -0.133 4.133 11 N -0.500 5.500 12 Si 0.744 3.256 13 H -0.191 1.191 14 H -0.220 1.220 15 H -0.222 1.222 16 C -0.101 4.101 17 N 0.083 4.917 18 C -0.184 4.184 19 C -0.183 4.183 20 C -0.194 4.194 21 N -0.180 5.180 22 C -0.039 4.039 23 N -0.165 5.165 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.167 0.833 28 H 0.079 0.921 29 H 0.161 0.839 30 H 0.153 0.847 31 H 0.125 0.875 32 H 0.157 0.843 33 H 0.117 0.883 34 H 0.146 0.854 35 H 0.158 0.842 36 H 0.130 0.870 37 H 0.113 0.887 38 H 0.161 0.839 39 H 0.152 0.848 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.185 1.958 18.906 19.988 hybrid contribution -0.311 1.110 -2.096 2.392 sum 5.874 3.067 16.810 18.069 Atomic orbital electron populations 1.20267 0.85202 1.04186 1.03341 1.22534 0.98030 0.90597 0.97090 1.21015 0.90829 1.00109 1.27098 1.19029 0.88585 0.83560 0.95261 1.86079 1.26944 1.20850 1.86757 1.20478 0.93999 0.74789 0.96091 0.91022 1.21460 1.03301 1.38333 0.96837 0.92069 1.25107 0.94998 0.93459 0.99767 1.69654 1.06965 1.39265 1.34139 0.86277 0.77075 0.79860 0.82339 1.19074 1.21984 1.22182 1.24137 1.04261 1.02774 0.78974 1.46012 1.15841 1.15158 1.14702 1.24270 1.07460 0.78281 1.08412 1.24229 0.88628 1.01721 1.03725 1.24265 0.87017 1.08641 0.99442 1.48484 1.06149 1.02450 1.60953 1.21964 0.83282 0.94281 1.04363 1.77378 0.85764 1.22423 1.30964 0.90572 0.90602 0.88627 0.83292 0.92073 0.83907 0.84711 0.87508 0.84260 0.88304 0.85416 0.84154 0.87006 0.88749 0.83910 0.84835 0.88734 0.90096 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.44 71.24 0.74 0.44 16 2 C 0.08 0.93 7.21 43.09 0.31 1.24 16 3 C -0.36 -3.76 9.42 22.12 0.21 -3.55 16 4 C 0.31 2.86 7.10 83.65 0.59 3.46 16 5 O -0.30 -1.49 6.03 -90.85 -0.55 -2.04 16 6 C 0.20 0.31 1.43 29.85 0.04 0.35 16 7 H 0.07 -0.19 4.62 -2.39 -0.01 -0.20 16 8 C -0.56 -7.97 8.52 25.60 0.22 -7.76 16 9 H 0.06 1.06 7.81 -2.91 -0.02 1.03 16 10 C 0.07 1.38 5.24 84.65 0.44 1.82 16 11 N -0.86 -15.22 10.94 21.45 0.23 -14.98 16 12 Si 0.92 18.48 29.54 68.60 2.03 20.51 16 13 H -0.27 -5.15 7.11 99.48 0.71 -4.45 16 14 H -0.29 -6.56 7.11 99.48 0.71 -5.85 16 15 H -0.30 -7.19 7.11 99.48 0.71 -6.48 16 16 C 0.02 -0.18 3.55 86.31 0.31 0.12 16 17 N -0.26 5.72 0.05 ******* -0.07 5.66 16 18 C -0.04 0.83 7.21 127.69 0.92 1.75 16 19 C -0.04 1.22 8.01 127.69 1.02 2.25 16 20 C -0.05 1.31 7.54 127.69 0.96 2.27 16 21 N -0.39 -3.90 4.02 -481.26 -1.93 -5.84 16 22 C 0.10 0.22 11.44 127.77 1.46 1.69 16 23 N -0.34 -4.75 12.57 -47.42 -0.60 -5.34 16 24 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 25 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.10 -0.02 8.14 -2.38 -0.02 -0.04 16 27 H 0.15 1.31 7.16 -2.91 -0.02 1.29 16 28 H 0.27 5.30 8.31 -92.71 -0.77 4.53 16 29 H 0.14 -1.78 8.09 -2.39 -0.02 -1.80 16 30 H 0.14 -0.42 6.12 -2.39 -0.01 -0.43 16 31 H 0.11 -1.73 7.99 -2.38 -0.02 -1.74 16 32 H 0.14 -3.75 8.05 -2.39 -0.02 -3.77 16 33 H 0.10 -1.20 5.01 -2.38 -0.01 -1.21 16 34 H 0.13 -3.88 8.12 -2.38 -0.02 -3.90 16 35 H 0.14 -4.73 8.10 -2.39 -0.02 -4.75 16 36 H 0.11 -2.97 8.14 -2.39 -0.02 -2.99 16 37 H 0.09 -1.76 5.89 -2.39 -0.01 -1.78 16 38 H 0.14 -4.37 8.14 -2.39 -0.02 -4.39 16 39 H 0.13 -3.69 8.14 -2.39 -0.02 -3.71 16 40 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.09 0.15 8.04 -2.39 -0.02 0.13 16 Total: 0.00 -45.47 330.02 7.34 -38.13 By element: Atomic # 1 Polarization: -41.16 SS G_CDS: 0.98 Total: -40.17 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 7.24 Total: 4.07 kcal Atomic # 7 Polarization: -18.15 SS G_CDS: -2.36 Total: -20.51 kcal Atomic # 8 Polarization: -1.49 SS G_CDS: -0.55 Total: -2.04 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: 2.03 Total: 20.51 kcal Total: -45.47 7.34 -38.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226836927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.733 kcal (2) G-P(sol) polarization free energy of solvation -45.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds