Wall clock time and date at job start Mon Mar 30 2020 01:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00248 * 2 1 4 4 H 1.48500 * 109.47093 * 239.99549 * 3 2 1 5 5 H 1.48498 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46884 * 119.99863 * 3 2 1 7 7 C 1.37882 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00453 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99374 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46640 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47214 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47415 * 59.99728 * 11 10 9 13 13 N 1.46898 * 109.46892 * 60.00103 * 12 11 10 14 14 C 1.46896 * 110.99852 * 155.00022 * 13 12 11 15 15 H 1.08999 * 110.27737 * 327.09149 * 14 13 12 16 16 C 1.54001 * 110.39317 * 89.23683 * 14 13 12 17 17 N 1.47902 * 107.05745 * 117.73449 * 16 14 13 18 18 C 1.48536 * 105.82263 * 25.33097 * 17 16 14 19 19 C 1.54595 * 110.31113 * 205.00321 * 14 13 12 20 20 H 1.08996 * 110.72469 * 337.38580 * 19 14 13 21 21 C 1.53000 * 110.72453 * 100.67017 * 19 14 13 22 22 O 1.42905 * 109.47064 * 179.97438 * 21 19 14 23 23 C 1.53002 * 109.46991 * 300.00660 * 12 11 10 24 24 C 1.52995 * 109.47168 * 60.00270 * 9 7 2 25 25 H 0.97002 * 119.99463 * 0.02562 * 1 2 3 26 26 H 1.08990 * 109.47134 * 299.99368 * 9 7 2 27 27 H 1.09001 * 109.47496 * 60.00098 * 10 9 7 28 28 H 1.09000 * 109.47276 * 300.00144 * 10 9 7 29 29 H 1.09007 * 109.46694 * 299.99688 * 11 10 9 30 30 H 1.09000 * 109.47207 * 180.02562 * 11 10 9 31 31 H 1.08998 * 109.47144 * 180.02562 * 12 11 10 32 32 H 1.00905 * 110.99791 * 31.05285 * 13 12 11 33 33 H 1.08997 * 109.91198 * 358.37919 * 16 14 13 34 34 H 1.08996 * 109.91183 * 237.08903 * 16 14 13 35 35 H 1.00901 * 110.99744 * 264.81952 * 17 16 14 36 36 H 1.09003 * 110.66577 * 79.22623 * 18 17 16 37 37 H 1.08991 * 110.66751 * 202.35915 * 18 17 16 38 38 H 1.09001 * 109.46900 * 299.95634 * 21 19 14 39 39 H 1.09001 * 109.47169 * 59.95539 * 21 19 14 40 40 H 0.96695 * 113.99842 * 180.02562 * 22 21 19 41 41 H 1.09005 * 109.47165 * 180.02562 * 23 12 11 42 42 H 1.09007 * 109.46830 * 299.99863 * 23 12 11 43 43 H 1.09009 * 109.47092 * 299.99301 * 24 9 7 44 44 H 1.09001 * 109.47938 * 59.99062 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 6 0.6008 -5.0678 -1.2496 13 7 1.4458 -4.9897 -2.4488 14 6 0.7914 -5.6317 -3.5965 15 1 0.1845 -6.4736 -3.2631 16 6 -0.0787 -4.6136 -4.3568 17 7 0.4795 -4.4996 -5.7217 18 6 1.1794 -5.7837 -5.9816 19 6 1.8480 -6.1047 -4.6212 20 1 2.7755 -5.5440 -4.5055 21 6 2.1011 -7.6073 -4.4835 22 8 3.0797 -8.0152 -5.4417 23 6 -0.3933 -3.9048 -1.2496 24 6 0.3718 -2.5804 -1.2490 25 1 -0.4849 0.8401 -0.0004 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 0.8532 -5.0451 0.8897 30 1 2.1884 -5.8156 0.0003 31 1 0.0555 -6.0116 -1.2498 32 1 2.3543 -5.3940 -2.2779 33 1 -0.0394 -3.6456 -3.8574 34 1 -1.1083 -4.9680 -4.4051 35 1 1.1172 -3.7204 -5.7876 36 1 0.4665 -6.5623 -6.2531 37 1 1.9318 -5.6609 -6.7605 38 1 2.4643 -7.8240 -3.4789 39 1 1.1722 -8.1498 -4.6590 40 1 3.2899 -8.9586 -5.4119 41 1 -1.0201 -3.9626 -2.1396 42 1 -1.0203 -3.9628 -0.3598 43 1 -0.3366 -1.7519 -1.2495 44 1 0.9987 -2.5228 -2.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246306590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:22 Heat of formation + Delta-G solvation = -62.018395 kcal Electronic energy + Delta-G solvation = -21923.388510 eV Core-core repulsion = 18874.402694 eV Total energy + Delta-G solvation = -3048.985816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.59488 -37.74833 -36.47110 -33.88539 -32.03164 -30.70467 -29.67332 -28.82737 -26.79557 -24.71044 -24.26916 -21.66524 -21.28388 -20.52944 -19.97485 -18.07848 -17.61515 -16.48922 -16.21821 -15.49680 -15.31404 -14.64265 -14.47370 -14.37927 -14.03943 -13.34568 -13.11382 -12.78151 -12.64672 -12.10269 -12.08192 -11.88517 -11.50733 -11.39412 -11.11493 -11.03883 -10.87323 -10.74173 -10.61875 -10.53287 -10.26426 -10.18700 -10.01990 -9.69265 -9.22581 -8.85056 -8.63577 -8.47338 -8.15733 -7.92929 -5.86688 -3.91946 3.38011 3.42551 3.45385 3.84922 4.24435 4.46452 4.52744 4.72255 4.81164 4.92887 5.22242 5.28626 5.35909 5.42385 5.45675 5.48062 5.55840 5.68736 5.75017 5.80707 5.97923 6.06038 6.18947 6.27297 6.33442 6.44745 6.50557 6.59955 6.80112 6.84374 6.89140 7.05681 7.30194 7.34964 7.37977 7.50391 7.56314 7.67021 7.73860 7.89328 8.22077 8.32639 8.62211 9.11848 9.71596 11.18460 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023675 B = 0.004891 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.391765 B = 5722.955676 C = 6024.090784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.508 4.508 8 H 0.050 0.950 9 C 0.052 3.948 10 C -0.102 4.102 11 C -0.119 4.119 12 C 0.094 3.906 13 N -0.662 5.662 14 C 0.068 3.932 15 H 0.047 0.953 16 C 0.047 3.953 17 N -0.675 5.675 18 C 0.057 3.943 19 C -0.130 4.130 20 H 0.092 0.908 21 C 0.088 3.912 22 O -0.571 6.571 23 C -0.109 4.109 24 C -0.096 4.096 25 H 0.258 0.742 26 H 0.017 0.983 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.024 0.976 32 H 0.336 0.664 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.341 0.659 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.046 0.954 40 H 0.377 0.623 41 H 0.043 0.957 42 H 0.048 0.952 43 H 0.081 0.919 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 -15.561 -7.939 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.714 3.286 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.547 4.547 8 H 0.069 0.931 9 C 0.034 3.966 10 C -0.139 4.139 11 C -0.157 4.157 12 C -0.015 4.015 13 N -0.294 5.294 14 C -0.044 4.044 15 H 0.065 0.935 16 C -0.083 4.083 17 N -0.302 5.302 18 C -0.073 4.073 19 C -0.150 4.150 20 H 0.110 0.890 21 C 0.010 3.990 22 O -0.376 6.376 23 C -0.147 4.147 24 C -0.134 4.134 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.155 0.845 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.157 0.843 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.224 0.776 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.464 -14.283 -8.630 16.694 hybrid contribution 1.369 -0.662 1.124 1.891 sum 1.833 -14.945 -7.506 16.824 Atomic orbital electron populations 1.69881 1.05775 1.26131 1.51243 1.24936 0.94779 0.98769 0.95427 0.86763 0.79667 0.83678 0.78459 1.20410 1.21442 1.20518 1.21195 0.92691 0.90921 1.49843 0.93147 1.18591 0.92556 0.91224 0.94227 1.21536 0.98635 0.93897 0.99858 1.21756 0.98235 0.98867 0.96801 1.21602 0.94088 0.96786 0.88993 1.60618 1.05189 1.59361 1.04233 1.22827 0.94475 0.95350 0.91730 0.93516 1.22947 0.97241 1.00885 0.87246 1.62744 1.36559 1.04615 1.26268 1.22994 0.96276 0.92664 0.95331 1.22942 1.00017 0.94658 0.97427 0.88986 1.22131 0.90813 0.94887 0.91185 1.86491 1.61707 1.29899 1.59517 1.21688 0.96532 0.97032 0.99438 1.21423 0.99164 0.93728 0.99123 0.93226 0.96497 0.94314 0.92604 0.92149 0.94154 0.95775 0.84548 0.88754 0.91299 0.84329 0.90707 0.90655 0.93937 0.93619 0.77599 0.93868 0.93313 0.90035 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 11.32 55.43 0.63 -25.06 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.08 8.56 -34.44 -0.29 -14.37 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.05 1.29 2.10 -91.77 -0.19 1.10 16 10 C -0.10 -2.08 4.98 -26.73 -0.13 -2.22 16 11 C -0.12 -1.99 5.30 -26.73 -0.14 -2.14 16 12 C 0.09 1.52 2.82 -67.71 -0.19 1.33 16 13 N -0.66 -9.80 4.55 -98.32 -0.45 -10.25 16 14 C 0.07 0.88 2.89 -66.35 -0.19 0.69 16 15 H 0.05 0.59 7.15 -51.93 -0.37 0.22 16 16 C 0.05 0.66 6.07 -2.75 -0.02 0.65 16 17 N -0.68 -8.94 7.51 -110.08 -0.83 -9.77 16 18 C 0.06 0.67 6.85 -1.89 -0.01 0.66 16 19 C -0.13 -1.50 2.79 -88.76 -0.25 -1.75 16 20 H 0.09 1.20 7.96 -51.93 -0.41 0.79 16 21 C 0.09 0.85 6.35 37.16 0.24 1.09 16 22 O -0.57 -5.50 13.51 -35.23 -0.48 -5.98 16 23 C -0.11 -2.05 4.99 -26.75 -0.13 -2.19 16 24 C -0.10 -2.23 4.68 -26.76 -0.13 -2.36 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.15 7.48 -51.93 -0.39 0.76 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.04 0.59 8.12 -51.93 -0.42 0.16 16 31 H 0.02 0.36 7.43 -51.93 -0.39 -0.02 16 32 H 0.34 4.74 7.78 -39.29 -0.31 4.43 16 33 H 0.09 1.57 6.16 -51.93 -0.32 1.25 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.34 4.50 8.92 -39.29 -0.35 4.15 16 36 H 0.07 0.85 8.02 -51.93 -0.42 0.43 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.40 8.10 -51.93 -0.42 -0.02 16 40 H 0.38 1.90 9.12 45.56 0.42 2.31 16 41 H 0.04 0.76 6.13 -51.93 -0.32 0.45 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.08 2.17 6.07 -51.92 -0.32 1.86 16 44 H 0.05 1.13 7.25 -51.93 -0.38 0.75 16 LS Contribution 330.17 15.07 4.98 4.98 Total: -1.00 -29.27 330.17 -9.60 -38.86 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.89 Total: 8.49 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -1.54 Total: -17.89 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.65 Total: -45.08 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.48 Total: -5.98 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.27 -9.60 -38.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246306590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.154 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds