Wall clock time and date at job start Mon Mar 30 2020 01:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00248 * 2 1 4 4 H 1.48500 * 109.47093 * 239.99549 * 3 2 1 5 5 H 1.48498 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46884 * 119.99863 * 3 2 1 7 7 C 1.37882 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00453 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99374 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46640 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47214 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47415 * 59.99728 * 11 10 9 13 13 N 1.46898 * 109.46892 * 60.00103 * 12 11 10 14 14 C 1.46896 * 110.99852 * 155.00022 * 13 12 11 15 15 H 1.08999 * 110.27737 * 327.09149 * 14 13 12 16 16 C 1.54001 * 110.39317 * 89.23683 * 14 13 12 17 17 N 1.47902 * 107.05745 * 117.73449 * 16 14 13 18 18 C 1.48536 * 105.82263 * 25.33097 * 17 16 14 19 19 C 1.54595 * 110.31113 * 205.00321 * 14 13 12 20 20 H 1.08996 * 110.72469 * 337.38580 * 19 14 13 21 21 C 1.53000 * 110.72453 * 100.67017 * 19 14 13 22 22 O 1.42905 * 109.47064 * 179.97438 * 21 19 14 23 23 C 1.53002 * 109.46991 * 300.00660 * 12 11 10 24 24 C 1.52995 * 109.47168 * 60.00270 * 9 7 2 25 25 H 0.97002 * 119.99463 * 0.02562 * 1 2 3 26 26 H 1.08990 * 109.47134 * 299.99368 * 9 7 2 27 27 H 1.09001 * 109.47496 * 60.00098 * 10 9 7 28 28 H 1.09000 * 109.47276 * 300.00144 * 10 9 7 29 29 H 1.09007 * 109.46694 * 299.99688 * 11 10 9 30 30 H 1.09000 * 109.47207 * 180.02562 * 11 10 9 31 31 H 1.08998 * 109.47144 * 180.02562 * 12 11 10 32 32 H 1.00905 * 110.99791 * 31.05285 * 13 12 11 33 33 H 1.08997 * 109.91198 * 358.37919 * 16 14 13 34 34 H 1.08996 * 109.91183 * 237.08903 * 16 14 13 35 35 H 1.00901 * 110.99744 * 264.81952 * 17 16 14 36 36 H 1.09003 * 110.66577 * 79.22623 * 18 17 16 37 37 H 1.08991 * 110.66751 * 202.35915 * 18 17 16 38 38 H 1.09001 * 109.46900 * 299.95634 * 21 19 14 39 39 H 1.09001 * 109.47169 * 59.95539 * 21 19 14 40 40 H 0.96695 * 113.99842 * 180.02562 * 22 21 19 41 41 H 1.09005 * 109.47165 * 180.02562 * 23 12 11 42 42 H 1.09007 * 109.46830 * 299.99863 * 23 12 11 43 43 H 1.09009 * 109.47092 * 299.99301 * 24 9 7 44 44 H 1.09001 * 109.47938 * 59.99062 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 6 0.6008 -5.0678 -1.2496 13 7 1.4458 -4.9897 -2.4488 14 6 0.7914 -5.6317 -3.5965 15 1 0.1845 -6.4736 -3.2631 16 6 -0.0787 -4.6136 -4.3568 17 7 0.4795 -4.4996 -5.7217 18 6 1.1794 -5.7837 -5.9816 19 6 1.8480 -6.1047 -4.6212 20 1 2.7755 -5.5440 -4.5055 21 6 2.1011 -7.6073 -4.4835 22 8 3.0797 -8.0152 -5.4417 23 6 -0.3933 -3.9048 -1.2496 24 6 0.3718 -2.5804 -1.2490 25 1 -0.4849 0.8401 -0.0004 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 0.8532 -5.0451 0.8897 30 1 2.1884 -5.8156 0.0003 31 1 0.0555 -6.0116 -1.2498 32 1 2.3543 -5.3940 -2.2779 33 1 -0.0394 -3.6456 -3.8574 34 1 -1.1083 -4.9680 -4.4051 35 1 1.1172 -3.7204 -5.7876 36 1 0.4665 -6.5623 -6.2531 37 1 1.9318 -5.6609 -6.7605 38 1 2.4643 -7.8240 -3.4789 39 1 1.1722 -8.1498 -4.6590 40 1 3.2899 -8.9586 -5.4119 41 1 -1.0201 -3.9626 -2.1396 42 1 -1.0203 -3.9628 -0.3598 43 1 -0.3366 -1.7519 -1.2495 44 1 0.9987 -2.5228 -2.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246306590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:21 Heat of formation + Delta-G solvation = -84.813996 kcal Electronic energy + Delta-G solvation = -21924.377001 eV Core-core repulsion = 18874.402694 eV Total energy + Delta-G solvation = -3049.974307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71262 -39.09100 -37.27686 -35.54485 -33.72359 -31.82398 -31.24861 -30.31776 -28.03153 -26.35697 -25.40840 -23.16347 -22.54188 -22.11146 -20.97535 -19.63207 -18.42799 -18.34014 -17.44544 -16.71909 -16.39017 -16.19224 -15.76553 -15.65681 -15.34706 -14.70158 -14.35447 -14.12854 -13.93450 -13.81756 -13.40808 -13.22486 -12.91239 -12.86034 -12.76095 -12.49137 -12.27397 -12.05082 -11.97779 -11.87890 -11.81444 -11.59093 -11.54730 -11.09039 -10.92987 -10.66718 -10.36460 -10.23894 -9.70409 -9.07395 -8.01233 -6.14479 1.41167 1.42480 1.49723 2.46369 3.06128 3.17198 3.24575 3.49340 3.83815 3.93499 4.02404 4.08462 4.15405 4.30124 4.40642 4.45860 4.49032 4.60180 4.69884 4.73640 4.82692 4.85178 4.93999 4.94680 4.97532 5.06074 5.10730 5.15489 5.22113 5.24523 5.37423 5.53808 5.65236 5.71782 5.82239 5.87258 6.19973 6.24310 6.34257 6.41667 6.53164 6.60020 6.90444 6.99444 7.52464 9.01526 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023675 B = 0.004891 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.391765 B = 5722.955676 C = 6024.090784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.946 3.054 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.045 0.955 9 C 0.048 3.952 10 C -0.093 4.093 11 C -0.112 4.112 12 C 0.104 3.896 13 N -0.674 5.674 14 C 0.075 3.925 15 H 0.062 0.938 16 C 0.048 3.952 17 N -0.683 5.683 18 C 0.060 3.940 19 C -0.122 4.122 20 H 0.076 0.924 21 C 0.093 3.907 22 O -0.588 6.588 23 C -0.103 4.103 24 C -0.080 4.080 25 H 0.257 0.743 26 H -0.018 1.018 27 H 0.033 0.967 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.343 0.657 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.338 0.662 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.398 0.602 41 H 0.053 0.947 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.275 -17.674 -8.556 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.772 3.228 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.064 0.936 9 C 0.030 3.970 10 C -0.130 4.130 11 C -0.150 4.150 12 C -0.005 4.005 13 N -0.307 5.307 14 C -0.037 4.037 15 H 0.079 0.921 16 C -0.082 4.082 17 N -0.309 5.309 18 C -0.069 4.069 19 C -0.143 4.143 20 H 0.094 0.906 21 C 0.015 3.985 22 O -0.397 6.397 23 C -0.141 4.141 24 C -0.118 4.118 25 H 0.066 0.934 26 H 0.000 1.000 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.163 0.837 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.154 0.846 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.247 0.753 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.259 -16.426 -9.248 18.892 hybrid contribution 1.132 0.025 1.287 1.714 sum 2.391 -16.401 -7.961 18.387 Atomic orbital electron populations 1.70037 1.07039 1.26708 1.51834 1.25682 0.95590 1.02049 0.95208 0.85801 0.78528 0.79773 0.78661 1.19901 1.21062 1.19806 1.21615 0.92755 0.92710 1.49810 0.93632 1.18589 0.93096 0.92109 0.93250 1.21358 0.97767 0.94423 0.99491 1.21691 0.98588 0.97545 0.97148 1.21429 0.93548 0.96310 0.89238 1.60464 1.05556 1.60483 1.04243 1.22760 0.94714 0.95059 0.91141 0.92062 1.22865 0.97920 0.99713 0.87713 1.62763 1.36974 1.05412 1.25746 1.23023 0.96375 0.91943 0.95592 1.22820 0.98704 0.96211 0.96571 0.90591 1.22043 0.91576 0.93251 0.91641 1.86436 1.61720 1.31973 1.59552 1.21573 0.96962 0.96016 0.99518 1.21103 0.98058 0.94908 0.97745 0.93388 0.99951 0.94820 0.92755 0.92354 0.90683 0.92973 0.83653 0.91794 0.91025 0.84636 0.89880 0.90448 0.93116 0.92265 0.75253 0.92843 0.94153 0.94168 0.94570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 11.32 21.45 0.24 -54.34 16 2 C 0.01 0.73 5.30 84.66 0.45 1.18 16 3 Si 0.95 45.06 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.53 -30.16 8.56 25.60 0.22 -29.95 16 8 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 9 C 0.05 2.43 2.10 -11.54 -0.02 2.41 16 10 C -0.09 -3.76 4.98 30.59 0.15 -3.61 16 11 C -0.11 -3.50 5.30 30.59 0.16 -3.34 16 12 C 0.10 3.10 2.82 44.92 0.13 3.23 16 13 N -0.67 -18.61 4.55 -464.98 -2.12 -20.73 16 14 C 0.07 1.75 2.89 45.80 0.13 1.88 16 15 H 0.06 1.31 7.15 -2.39 -0.02 1.29 16 16 C 0.05 1.32 6.07 86.45 0.52 1.84 16 17 N -0.68 -17.49 7.51 -502.18 -3.77 -21.26 16 18 C 0.06 1.29 6.85 86.65 0.59 1.89 16 19 C -0.12 -2.55 2.79 -9.59 -0.03 -2.57 16 20 H 0.08 1.85 7.96 -2.39 -0.02 1.83 16 21 C 0.09 1.48 6.35 71.98 0.46 1.94 16 22 O -0.59 -9.56 13.51 -148.98 -2.01 -11.58 16 23 C -0.10 -3.85 4.99 30.58 0.15 -3.69 16 24 C -0.08 -3.82 4.68 30.58 0.14 -3.68 16 25 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 26 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 2.20 7.48 -2.39 -0.02 2.18 16 29 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 31 H 0.05 1.34 7.43 -2.39 -0.02 1.32 16 32 H 0.34 8.75 7.78 -89.69 -0.70 8.05 16 33 H 0.06 2.14 6.16 -2.39 -0.01 2.13 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.34 8.89 8.92 -89.69 -0.80 8.09 16 36 H 0.08 1.66 8.02 -2.39 -0.02 1.64 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.80 8.10 -2.39 -0.02 0.78 16 40 H 0.40 2.73 9.12 -74.06 -0.68 2.05 16 41 H 0.05 1.88 6.13 -2.38 -0.01 1.86 16 42 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.04 2.24 6.07 -2.38 -0.01 2.22 16 44 H 0.04 1.77 7.25 -2.39 -0.02 1.75 16 Total: -1.00 -64.67 330.17 -3.74 -68.41 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -1.17 Total: 24.88 kcal Atomic # 6 Polarization: -35.53 SS G_CDS: 3.06 Total: -32.46 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -5.65 Total: -96.34 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -2.01 Total: -11.58 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.67 -3.74 -68.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246306590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.403 kcal (2) G-P(sol) polarization free energy of solvation -64.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds