Wall clock time and date at job start Mon Mar 30 2020 01:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99882 * 2 1 4 4 H 1.48505 * 109.47066 * 269.99935 * 3 2 1 5 5 H 1.48500 * 109.47079 * 29.99992 * 3 2 1 6 6 H 1.48497 * 109.47134 * 150.00415 * 3 2 1 7 7 C 1.37878 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99904 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99915 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46980 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46980 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47030 * 299.99412 * 11 10 9 13 13 N 1.46897 * 109.46907 * 180.02562 * 12 11 10 14 14 C 1.46903 * 110.99753 * 155.00715 * 13 12 11 15 15 H 1.08992 * 110.28935 * 34.17586 * 14 13 12 16 16 C 1.54377 * 110.32372 * 156.30366 * 14 13 12 17 17 N 1.48563 * 104.59664 * 142.84894 * 16 14 13 18 18 C 1.48554 * 104.22053 * 320.51565 * 17 16 14 19 19 C 1.54383 * 104.70100 * 39.42167 * 18 17 16 20 20 H 1.09001 * 110.32005 * 95.10049 * 19 18 17 21 21 C 1.52994 * 110.32737 * 217.30780 * 19 18 17 22 22 O 1.42891 * 109.47654 * 294.27681 * 21 19 18 23 23 C 1.52999 * 109.46758 * 60.00452 * 12 11 10 24 24 C 1.52995 * 109.46792 * 299.99027 * 9 7 2 25 25 H 0.96996 * 120.00576 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47169 * 59.99584 * 9 7 2 27 27 H 1.09002 * 109.47236 * 59.99177 * 10 9 7 28 28 H 1.09002 * 109.47149 * 299.99733 * 10 9 7 29 29 H 1.09006 * 109.47135 * 180.02562 * 11 10 9 30 30 H 1.08993 * 109.47591 * 60.00130 * 11 10 9 31 31 H 1.08993 * 109.47520 * 300.00762 * 12 11 10 32 32 H 1.00902 * 111.00307 * 31.05076 * 13 12 11 33 33 H 1.09007 * 110.41648 * 24.07153 * 16 14 13 34 34 H 1.08999 * 110.51553 * 261.67945 * 16 14 13 35 35 H 1.00895 * 111.00005 * 200.95947 * 17 16 14 36 36 H 1.09002 * 110.41508 * 158.25930 * 18 17 16 37 37 H 1.09003 * 110.41701 * 280.58432 * 18 17 16 38 38 H 1.09005 * 109.46662 * 54.27646 * 21 19 18 39 39 H 1.09000 * 109.47078 * 174.27018 * 21 19 18 40 40 H 0.96704 * 114.00628 * 179.97438 * 22 21 19 41 41 H 1.09007 * 109.46940 * 59.99657 * 23 12 11 42 42 H 1.09002 * 109.47149 * 179.97438 * 23 12 11 43 43 H 1.08997 * 109.47719 * 300.00220 * 24 9 7 44 44 H 1.09001 * 109.47074 * 60.00585 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0001 11 6 5.5516 -2.6364 -0.0001 12 6 6.0615 -1.9151 -1.2494 13 7 7.5304 -1.9156 -1.2498 14 6 8.0566 -1.7959 -2.6161 15 1 7.4024 -1.1663 -3.2192 16 6 9.4865 -1.2146 -2.5911 17 7 10.2033 -1.9369 -3.6734 18 6 9.7074 -3.3334 -3.5708 19 6 8.2019 -3.1927 -3.2590 20 1 7.6182 -3.2486 -4.1779 21 6 7.7581 -4.2806 -2.2791 22 8 7.8719 -5.5603 -2.9046 23 6 5.5514 -0.4726 -1.2493 24 6 4.0219 -0.4721 -1.2486 25 1 -0.4851 0.8400 -0.0004 26 1 3.8745 -0.6807 0.8905 27 1 3.6585 -3.1502 -0.8903 28 1 3.6580 -3.1505 0.8897 29 1 5.9150 -3.6641 -0.0007 30 1 5.9150 -2.1226 0.8898 31 1 5.6981 -2.4288 -2.1394 32 1 7.8919 -2.7400 -0.7940 33 1 9.9587 -1.4077 -1.6277 34 1 9.4673 -0.1442 -2.7963 35 1 11.2019 -1.8967 -3.5352 36 1 9.8526 -3.8588 -4.5147 37 1 10.2155 -3.8589 -2.7622 38 1 8.3920 -4.2518 -1.3928 39 1 6.7214 -4.1083 -1.9901 40 1 7.6069 -6.2992 -2.3398 41 1 5.9148 0.0411 -0.3592 42 1 5.9150 0.0414 -2.1391 43 1 3.6590 -0.9854 -2.1390 44 1 3.6586 0.5556 -1.2482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246306593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:25 Heat of formation + Delta-G solvation = -49.257054 kcal Electronic energy + Delta-G solvation = -21866.746037 eV Core-core repulsion = 18818.313595 eV Total energy + Delta-G solvation = -3048.432442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05210 -37.89735 -36.55243 -34.53425 -32.30252 -30.67876 -30.25175 -29.41603 -27.02621 -25.28010 -23.90182 -22.29382 -21.64310 -20.61441 -19.46854 -18.91385 -17.98481 -16.65598 -16.55736 -16.26268 -15.35211 -15.05160 -14.49688 -14.08651 -13.98734 -13.62658 -13.35083 -13.33467 -13.10448 -12.61763 -12.42598 -12.14063 -11.88858 -11.74643 -11.56381 -11.40697 -11.17065 -10.87100 -10.77419 -10.63579 -10.49102 -10.16818 -10.00613 -9.80711 -9.52712 -9.03180 -8.90074 -8.82734 -8.51403 -8.35526 -6.04991 -4.03765 3.29583 3.40540 3.43060 3.69875 4.03155 4.28860 4.38448 4.43760 4.65710 4.85673 5.04809 5.07102 5.14272 5.20798 5.26606 5.28301 5.31744 5.51379 5.55361 5.64248 5.77723 5.86842 5.87765 5.92108 6.06047 6.09597 6.17419 6.22998 6.27903 6.43685 6.53738 6.64300 6.71995 6.91653 7.00847 7.03937 7.18298 7.26322 7.33576 7.41786 7.59154 7.81232 8.55102 8.99127 9.58286 11.08462 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.004824 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.920476 B = 5803.078112 C = 6418.765328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.015 3.985 10 C -0.096 4.096 11 C -0.120 4.120 12 C 0.091 3.909 13 N -0.685 5.685 14 C 0.092 3.908 15 H 0.093 0.907 16 C 0.046 3.954 17 N -0.670 5.670 18 C 0.050 3.950 19 C -0.123 4.123 20 H 0.087 0.913 21 C 0.074 3.926 22 O -0.571 6.571 23 C -0.106 4.106 24 C -0.120 4.120 25 H 0.263 0.737 26 H 0.026 0.974 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.337 0.663 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.337 0.663 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.380 0.620 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.742 -6.778 -3.958 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.227 1.227 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.004 4.004 10 C -0.134 4.134 11 C -0.158 4.158 12 C -0.018 4.018 13 N -0.318 5.318 14 C -0.019 4.019 15 H 0.112 0.888 16 C -0.084 4.084 17 N -0.299 5.299 18 C -0.079 4.079 19 C -0.144 4.144 20 H 0.106 0.894 21 C -0.005 4.005 22 O -0.376 6.376 23 C -0.144 4.144 24 C -0.158 4.158 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.159 0.841 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.152 0.848 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.227 0.773 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 19.431 -5.399 -4.888 20.751 hybrid contribution 0.405 -0.575 0.874 1.122 sum 19.837 -5.974 -4.014 21.102 Atomic orbital electron populations 1.69901 1.06332 1.26880 1.51116 1.25030 0.94666 0.99077 0.94507 0.86838 0.79942 0.83546 0.77854 1.20691 1.22698 1.18918 1.21092 0.89042 0.94349 1.50646 0.91019 1.19140 0.96341 0.91708 0.93226 1.21402 0.91509 0.99405 1.01055 1.21799 0.98414 0.98034 0.97588 1.21605 0.85053 0.97410 0.97696 1.60589 1.08782 1.46263 1.16155 1.22364 0.96304 0.93745 0.89515 0.88847 1.22917 0.93273 0.99268 0.92951 1.63703 1.09848 1.10160 1.46153 1.22815 0.93987 0.90152 1.00984 1.22550 0.97013 0.94834 1.00018 0.89422 1.22449 1.00055 0.83464 0.94484 1.86456 1.90440 1.15986 1.44740 1.21585 0.96880 0.94785 1.01136 1.21968 0.92327 1.00286 1.01242 0.92748 0.95546 0.92897 0.92511 0.93641 0.91503 0.93689 0.84113 0.93359 0.89708 0.84840 0.90141 0.94242 0.93651 0.92330 0.77311 0.91955 0.93439 0.92475 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 2 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 3 Si 0.89 22.15 24.37 -169.99 -4.14 18.01 16 4 H -0.28 -6.83 6.87 56.52 0.39 -6.44 16 5 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.26 -6.31 6.53 56.52 0.37 -5.95 16 7 C -0.51 -14.29 9.14 -34.44 -0.31 -14.61 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.01 0.33 1.69 -91.77 -0.16 0.18 16 10 C -0.10 -1.80 5.14 -26.73 -0.14 -1.94 16 11 C -0.12 -1.81 5.09 -26.73 -0.14 -1.94 16 12 C 0.09 1.33 1.23 -67.71 -0.08 1.25 16 13 N -0.68 -8.38 5.87 -98.20 -0.58 -8.96 16 14 C 0.09 1.07 3.15 -66.23 -0.21 0.86 16 15 H 0.09 1.22 7.19 -51.93 -0.37 0.84 16 16 C 0.05 0.48 7.18 -2.18 -0.02 0.46 16 17 N -0.67 -6.66 7.63 -109.66 -0.84 -7.50 16 18 C 0.05 0.51 6.83 -2.18 -0.01 0.49 16 19 C -0.12 -1.37 3.28 -89.14 -0.29 -1.66 16 20 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 21 C 0.07 0.75 5.01 37.15 0.19 0.94 16 22 O -0.57 -5.82 13.47 -35.23 -0.47 -6.29 16 23 C -0.11 -1.83 5.41 -26.76 -0.14 -1.98 16 24 C -0.12 -2.55 4.68 -26.76 -0.13 -2.67 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.04 0.57 7.49 -51.93 -0.39 0.18 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.68 6.87 -51.93 -0.36 0.33 16 32 H 0.34 3.70 5.43 -39.29 -0.21 3.49 16 33 H 0.05 0.49 8.06 -51.93 -0.42 0.07 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.34 2.70 8.92 -39.29 -0.35 2.35 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.38 7.81 -51.93 -0.41 -0.03 16 38 H 0.05 0.41 6.69 -51.93 -0.35 0.07 16 39 H 0.06 0.65 5.06 -51.93 -0.26 0.39 16 40 H 0.38 2.28 9.12 45.56 0.42 2.70 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.77 7.47 -51.93 -0.39 0.38 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 LS Contribution 321.10 15.07 4.84 4.84 Total: -1.00 -30.79 321.10 -8.57 -39.37 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.62 Total: 6.29 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -1.54 Total: -18.74 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.64 Total: -43.48 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.47 Total: -6.29 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.14 Total: 18.01 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.79 -8.57 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246306593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.890 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds