Wall clock time and date at job start Mon Mar 30 2020 01:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99882 * 2 1 4 4 H 1.48505 * 109.47066 * 269.99935 * 3 2 1 5 5 H 1.48500 * 109.47079 * 29.99992 * 3 2 1 6 6 H 1.48497 * 109.47134 * 150.00415 * 3 2 1 7 7 C 1.37878 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99904 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99915 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46980 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46980 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47030 * 299.99412 * 11 10 9 13 13 N 1.46897 * 109.46907 * 180.02562 * 12 11 10 14 14 C 1.46903 * 110.99753 * 155.00715 * 13 12 11 15 15 H 1.08992 * 110.28935 * 34.17586 * 14 13 12 16 16 C 1.54377 * 110.32372 * 156.30366 * 14 13 12 17 17 N 1.48563 * 104.59664 * 142.84894 * 16 14 13 18 18 C 1.48554 * 104.22053 * 320.51565 * 17 16 14 19 19 C 1.54383 * 104.70100 * 39.42167 * 18 17 16 20 20 H 1.09001 * 110.32005 * 95.10049 * 19 18 17 21 21 C 1.52994 * 110.32737 * 217.30780 * 19 18 17 22 22 O 1.42891 * 109.47654 * 294.27681 * 21 19 18 23 23 C 1.52999 * 109.46758 * 60.00452 * 12 11 10 24 24 C 1.52995 * 109.46792 * 299.99027 * 9 7 2 25 25 H 0.96996 * 120.00576 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47169 * 59.99584 * 9 7 2 27 27 H 1.09002 * 109.47236 * 59.99177 * 10 9 7 28 28 H 1.09002 * 109.47149 * 299.99733 * 10 9 7 29 29 H 1.09006 * 109.47135 * 180.02562 * 11 10 9 30 30 H 1.08993 * 109.47591 * 60.00130 * 11 10 9 31 31 H 1.08993 * 109.47520 * 300.00762 * 12 11 10 32 32 H 1.00902 * 111.00307 * 31.05076 * 13 12 11 33 33 H 1.09007 * 110.41648 * 24.07153 * 16 14 13 34 34 H 1.08999 * 110.51553 * 261.67945 * 16 14 13 35 35 H 1.00895 * 111.00005 * 200.95947 * 17 16 14 36 36 H 1.09002 * 110.41508 * 158.25930 * 18 17 16 37 37 H 1.09003 * 110.41701 * 280.58432 * 18 17 16 38 38 H 1.09005 * 109.46662 * 54.27646 * 21 19 18 39 39 H 1.09000 * 109.47078 * 174.27018 * 21 19 18 40 40 H 0.96704 * 114.00628 * 179.97438 * 22 21 19 41 41 H 1.09007 * 109.46940 * 59.99657 * 23 12 11 42 42 H 1.09002 * 109.47149 * 179.97438 * 23 12 11 43 43 H 1.08997 * 109.47719 * 300.00220 * 24 9 7 44 44 H 1.09001 * 109.47074 * 60.00585 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0001 11 6 5.5516 -2.6364 -0.0001 12 6 6.0615 -1.9151 -1.2494 13 7 7.5304 -1.9156 -1.2498 14 6 8.0566 -1.7959 -2.6161 15 1 7.4024 -1.1663 -3.2192 16 6 9.4865 -1.2146 -2.5911 17 7 10.2033 -1.9369 -3.6734 18 6 9.7074 -3.3334 -3.5708 19 6 8.2019 -3.1927 -3.2590 20 1 7.6182 -3.2486 -4.1779 21 6 7.7581 -4.2806 -2.2791 22 8 7.8719 -5.5603 -2.9046 23 6 5.5514 -0.4726 -1.2493 24 6 4.0219 -0.4721 -1.2486 25 1 -0.4851 0.8400 -0.0004 26 1 3.8745 -0.6807 0.8905 27 1 3.6585 -3.1502 -0.8903 28 1 3.6580 -3.1505 0.8897 29 1 5.9150 -3.6641 -0.0007 30 1 5.9150 -2.1226 0.8898 31 1 5.6981 -2.4288 -2.1394 32 1 7.8919 -2.7400 -0.7940 33 1 9.9587 -1.4077 -1.6277 34 1 9.4673 -0.1442 -2.7963 35 1 11.2019 -1.8967 -3.5352 36 1 9.8526 -3.8588 -4.5147 37 1 10.2155 -3.8589 -2.7622 38 1 8.3920 -4.2518 -1.3928 39 1 6.7214 -4.1083 -1.9901 40 1 7.6069 -6.2992 -2.3398 41 1 5.9148 0.0411 -0.3592 42 1 5.9150 0.0414 -2.1391 43 1 3.6590 -0.9854 -2.1390 44 1 3.6586 0.5556 -1.2482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246306593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:24 Heat of formation + Delta-G solvation = -75.409279 kcal Electronic energy + Delta-G solvation = -21867.880083 eV Core-core repulsion = 18818.313595 eV Total energy + Delta-G solvation = -3049.566488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01222 -39.22109 -37.30486 -35.87861 -34.20190 -31.73508 -31.71688 -30.66123 -28.23937 -26.09505 -25.64323 -23.68182 -22.53241 -22.12175 -20.54951 -20.26067 -18.89873 -18.65170 -17.41033 -17.31101 -16.72407 -16.10953 -15.70008 -15.34040 -15.14153 -14.90351 -14.83528 -14.51682 -14.37478 -14.20295 -13.50819 -13.36159 -13.25526 -12.97050 -12.75074 -12.73178 -12.47391 -12.11337 -12.05604 -11.97677 -11.82536 -11.70866 -11.56885 -11.16270 -10.92009 -10.89107 -10.75698 -10.52171 -9.57503 -9.38653 -8.29493 -6.32211 1.30215 1.35397 1.46346 2.32797 2.85084 3.06702 3.24034 3.43130 3.56974 3.80417 3.88136 3.96203 4.09626 4.23567 4.32945 4.35517 4.41234 4.45245 4.47511 4.53847 4.65424 4.70044 4.70654 4.75665 4.80894 4.86491 4.95418 5.05227 5.06932 5.10193 5.15242 5.25337 5.38185 5.44144 5.57609 5.64797 5.72580 5.82848 6.09611 6.33757 6.39602 6.46443 6.76132 6.81573 7.33658 8.87647 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.004824 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.920476 B = 5803.078112 C = 6418.765328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.301 1.301 6 H -0.245 1.245 7 C -0.518 4.518 8 H 0.032 0.968 9 C 0.013 3.987 10 C -0.092 4.092 11 C -0.110 4.110 12 C 0.101 3.899 13 N -0.677 5.677 14 C 0.093 3.907 15 H 0.078 0.922 16 C 0.051 3.949 17 N -0.677 5.677 18 C 0.055 3.945 19 C -0.124 4.124 20 H 0.068 0.932 21 C 0.078 3.922 22 O -0.586 6.586 23 C -0.099 4.099 24 C -0.118 4.118 25 H 0.264 0.736 26 H 0.022 0.978 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.349 0.651 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.349 0.651 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.398 0.602 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.055 -6.847 -3.792 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.229 1.229 6 H -0.168 1.168 7 C -0.556 4.556 8 H 0.050 0.950 9 C -0.006 4.006 10 C -0.131 4.131 11 C -0.148 4.148 12 C -0.009 4.009 13 N -0.311 5.311 14 C -0.019 4.019 15 H 0.096 0.904 16 C -0.078 4.078 17 N -0.307 5.307 18 C -0.074 4.074 19 C -0.145 4.145 20 H 0.087 0.913 21 C -0.001 4.001 22 O -0.394 6.394 23 C -0.137 4.137 24 C -0.156 4.156 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.172 0.828 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.165 0.835 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.247 0.753 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 22.782 -5.501 -4.715 23.906 hybrid contribution -0.689 -0.668 0.797 1.247 sum 22.092 -6.168 -3.918 23.269 Atomic orbital electron populations 1.70053 1.08246 1.27885 1.53249 1.25889 0.95368 1.03003 0.94402 0.85822 0.79224 0.78785 0.78449 1.19701 1.22926 1.16831 1.21494 0.92021 0.92735 1.49359 0.95009 1.19125 0.92905 0.94697 0.93874 1.21300 0.94711 0.96484 1.00556 1.21684 0.94949 1.00299 0.97847 1.21369 0.86663 0.95451 0.97376 1.60481 1.06917 1.46986 1.16674 1.22325 0.96754 0.93933 0.88848 0.90421 1.22837 0.92401 0.99128 0.93476 1.63665 1.10822 1.10032 1.46183 1.22747 0.93309 0.90286 1.01087 1.22513 0.97530 0.95006 0.99496 0.91318 1.22372 0.99764 0.83296 0.94632 1.86419 1.90573 1.16600 1.45843 1.21487 0.93666 0.96892 1.01700 1.21839 0.95395 0.98690 0.99696 0.92706 0.95960 0.93598 0.92990 0.90305 0.91121 0.94120 0.82779 0.92473 0.89824 0.83455 0.90684 0.93193 0.91874 0.93248 0.75257 0.91974 0.92244 0.93321 0.95095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 2 C 0.01 0.58 5.45 84.66 0.46 1.04 16 3 Si 0.95 46.00 24.37 68.60 1.67 47.67 16 4 H -0.27 -12.61 6.87 99.48 0.68 -11.93 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.24 -10.95 6.53 99.48 0.65 -10.30 16 7 C -0.52 -29.68 9.14 25.60 0.23 -29.45 16 8 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 9 C 0.01 0.58 1.69 -11.54 -0.02 0.56 16 10 C -0.09 -3.40 5.14 30.59 0.16 -3.24 16 11 C -0.11 -2.96 5.09 30.59 0.16 -2.81 16 12 C 0.10 2.67 1.23 44.92 0.06 2.73 16 13 N -0.68 -14.23 5.87 -464.59 -2.73 -16.96 16 14 C 0.09 1.91 3.15 45.87 0.14 2.06 16 15 H 0.08 1.87 7.19 -2.39 -0.02 1.85 16 16 C 0.05 0.92 7.18 86.45 0.62 1.54 16 17 N -0.68 -11.69 7.63 -500.85 -3.82 -15.50 16 18 C 0.06 0.98 6.83 86.45 0.59 1.57 16 19 C -0.12 -2.49 3.28 -9.83 -0.03 -2.52 16 20 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 21 C 0.08 1.35 5.01 71.98 0.36 1.71 16 22 O -0.59 -10.45 13.47 -148.98 -2.01 -12.45 16 23 C -0.10 -3.20 5.41 30.58 0.17 -3.03 16 24 C -0.12 -4.88 4.68 30.58 0.14 -4.73 16 25 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 26 H 0.02 1.03 7.20 -2.39 -0.02 1.02 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.08 1.65 7.49 -2.38 -0.02 1.63 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.15 6.87 -2.39 -0.02 1.13 16 32 H 0.35 6.16 5.43 -89.69 -0.49 5.67 16 33 H 0.06 0.93 8.06 -2.38 -0.02 0.92 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.35 4.59 8.92 -89.70 -0.80 3.79 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 0.79 7.81 -2.39 -0.02 0.77 16 38 H 0.06 0.88 6.69 -2.38 -0.02 0.87 16 39 H 0.05 0.95 5.06 -2.39 -0.01 0.94 16 40 H 0.40 3.69 9.12 -74.05 -0.68 3.01 16 41 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.06 1.78 7.47 -2.39 -0.02 1.76 16 43 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.03 1.37 3.27 -2.39 -0.01 1.36 16 Total: -1.00 -67.91 321.10 -4.58 -72.49 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -1.03 Total: 19.68 kcal Atomic # 6 Polarization: -37.62 SS G_CDS: 3.04 Total: -34.58 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -6.25 Total: -92.81 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -2.01 Total: -12.45 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.67 kcal Total: -67.91 -4.58 -72.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246306593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.916 kcal (2) G-P(sol) polarization free energy of solvation -67.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds