Wall clock time and date at job start Mon Mar 30 2020 01:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00060 * 2 1 4 4 H 1.48500 * 109.47552 * 240.00237 * 3 2 1 5 5 H 1.48503 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47051 * 119.99813 * 3 2 1 7 7 C 1.37880 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99718 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46894 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47240 * 60.00184 * 11 10 9 13 13 N 1.46905 * 109.46865 * 59.99876 * 12 11 10 14 14 C 1.46899 * 111.00051 * 155.00138 * 13 12 11 15 15 H 1.08997 * 110.28417 * 43.74344 * 14 13 12 16 16 C 1.54377 * 110.32168 * 281.50906 * 14 13 12 17 17 N 1.48563 * 104.59557 * 217.24935 * 16 14 13 18 18 C 1.48561 * 104.21879 * 39.48292 * 17 16 14 19 19 C 1.54258 * 110.32193 * 165.87298 * 14 13 12 20 20 H 1.09003 * 110.32291 * 237.78861 * 19 14 13 21 21 C 1.52998 * 110.32826 * 359.89690 * 19 14 13 22 22 O 1.42896 * 109.47090 * 181.67613 * 21 19 14 23 23 C 1.53001 * 109.47150 * 300.00095 * 12 11 10 24 24 C 1.52995 * 109.47126 * 59.99836 * 23 12 11 25 25 H 0.97003 * 120.00144 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46999 * 299.99939 * 9 7 2 27 27 H 1.09003 * 109.46977 * 60.00247 * 10 9 7 28 28 H 1.08995 * 109.47425 * 299.99955 * 10 9 7 29 29 H 1.09003 * 109.47909 * 300.00339 * 11 10 9 30 30 H 1.09003 * 109.47080 * 180.02562 * 11 10 9 31 31 H 1.08998 * 109.47240 * 179.97438 * 12 11 10 32 32 H 1.00904 * 110.99844 * 278.95374 * 13 12 11 33 33 H 1.09002 * 110.41376 * 336.02802 * 16 14 13 34 34 H 1.09000 * 110.41398 * 98.35513 * 16 14 13 35 35 H 1.00896 * 111.00293 * 279.92946 * 17 16 14 36 36 H 1.09000 * 110.41508 * 201.73884 * 18 17 16 37 37 H 1.09001 * 110.41168 * 79.29873 * 18 17 16 38 38 H 1.09001 * 109.46807 * 301.67779 * 21 19 14 39 39 H 1.09002 * 109.47186 * 61.67155 * 21 19 14 40 40 H 0.96705 * 113.99487 * 180.02562 * 22 21 19 41 41 H 1.08994 * 109.46816 * 179.97438 * 23 12 11 42 42 H 1.08993 * 109.46796 * 299.99182 * 23 12 11 43 43 H 1.09003 * 109.47080 * 180.02562 * 24 23 12 44 44 H 1.08995 * 109.47299 * 59.99953 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4803 -4.9870 -0.0033 12 6 0.6003 -5.0674 -1.2523 13 7 1.4446 -4.9888 -2.4520 14 6 0.7895 -5.6305 -3.5996 15 1 -0.2618 -5.3460 -3.6423 16 6 0.9287 -7.1652 -3.5072 17 7 1.1250 -7.6085 -4.9115 18 6 2.0140 -6.5739 -5.4999 19 6 1.5036 -5.2414 -4.9105 20 1 0.8023 -4.7677 -5.5974 21 6 2.6762 -4.3031 -4.6186 22 8 3.2998 -3.9236 -5.8471 23 6 -0.3939 -3.9044 -1.2513 24 6 0.3711 -2.5795 -1.2508 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5575 0.8880 27 1 2.8720 -3.6051 0.8873 28 1 2.8720 -3.6036 -0.8926 29 1 0.8539 -5.0454 0.8868 30 1 2.1887 -5.8156 -0.0036 31 1 0.0556 -6.0115 -1.2529 32 1 1.6862 -4.0319 -2.6621 33 1 1.7933 -7.4327 -2.8998 34 1 0.0221 -7.6048 -3.0912 35 1 0.2452 -7.6515 -5.4035 36 1 1.9239 -6.5683 -6.5862 37 1 3.0485 -6.7488 -5.2043 38 1 2.3105 -3.4130 -4.1066 39 1 3.4017 -4.8141 -3.9855 40 1 4.0536 -3.3277 -5.7379 41 1 -1.0205 -3.9614 -2.1414 42 1 -1.0203 -3.9628 -0.3613 43 1 -0.3372 -1.7509 -1.2497 44 1 0.9975 -2.5212 -2.1409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246306597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:28 Heat of formation + Delta-G solvation = -57.810610 kcal Electronic energy + Delta-G solvation = -22157.691216 eV Core-core repulsion = 19108.887864 eV Total energy + Delta-G solvation = -3048.803352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.78314 -37.83374 -36.25951 -33.89464 -32.15092 -30.55535 -29.69861 -28.86571 -26.58622 -24.78127 -24.52516 -21.99474 -21.52996 -20.66999 -19.42192 -18.12802 -17.40402 -16.42831 -16.32757 -15.66978 -15.11411 -14.84034 -14.54976 -14.24172 -13.58758 -13.44688 -13.18681 -13.04815 -12.69540 -12.17472 -12.03615 -11.84224 -11.75569 -11.33856 -11.19880 -11.05263 -10.95390 -10.77478 -10.70038 -10.53706 -10.20157 -10.06347 -9.95768 -9.89730 -9.36375 -8.97227 -8.78586 -8.67010 -8.30998 -7.97690 -5.99917 -4.06268 3.29187 3.34475 3.36852 4.04396 4.27069 4.41584 4.47115 4.75771 4.91620 5.08727 5.29105 5.35685 5.43321 5.47589 5.51792 5.56576 5.62177 5.71302 5.78716 5.89318 5.96319 6.08977 6.13629 6.18237 6.23238 6.37708 6.44867 6.52974 6.61759 6.65658 6.78225 6.94837 7.13784 7.18005 7.25656 7.43837 7.48026 7.67091 7.72616 7.74216 8.00150 8.12938 8.46035 8.98428 9.58704 11.05340 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021927 B = 0.005559 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.678875 B = 5036.074984 C = 5752.198622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.106 4.106 11 C -0.103 4.103 12 C 0.091 3.909 13 N -0.675 5.675 14 C 0.058 3.942 15 H 0.047 0.953 16 C 0.050 3.950 17 N -0.671 5.671 18 C 0.057 3.943 19 C -0.122 4.122 20 H 0.076 0.924 21 C 0.088 3.912 22 O -0.579 6.579 23 C -0.149 4.149 24 C -0.106 4.106 25 H 0.259 0.741 26 H 0.023 0.977 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.352 0.648 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.332 0.668 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.380 0.620 41 H 0.037 0.963 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.418 -11.052 -7.999 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.144 4.144 11 C -0.141 4.141 12 C -0.019 4.019 13 N -0.313 5.313 14 C -0.055 4.055 15 H 0.065 0.935 16 C -0.080 4.080 17 N -0.296 5.296 18 C -0.073 4.073 19 C -0.142 4.142 20 H 0.094 0.906 21 C 0.009 3.991 22 O -0.385 6.385 23 C -0.188 4.188 24 C -0.144 4.144 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.177 0.823 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.147 0.853 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.227 0.773 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.680 -12.414 -7.965 14.845 hybrid contribution -0.592 2.953 -0.010 3.012 sum 1.088 -9.461 -7.975 12.422 Atomic orbital electron populations 1.69860 1.05865 1.26377 1.50971 1.24970 0.94808 0.98965 0.95241 0.86727 0.79654 0.83427 0.78579 1.20387 1.21389 1.20315 1.21215 0.92838 0.90788 1.50204 0.92868 1.18649 0.92660 0.91737 0.93931 1.21567 0.98555 0.94163 1.00106 1.21514 0.98231 0.98745 0.95610 1.21528 0.92762 0.97004 0.90558 1.61026 1.43246 1.24380 1.02613 1.22869 0.96142 0.96397 0.90072 0.93546 1.23121 1.02314 0.91830 0.90763 1.63365 1.17476 1.45437 1.03333 1.22943 0.98314 0.87341 0.98671 1.22554 0.97211 0.97513 0.96927 0.90557 1.22116 0.94426 0.97102 0.85421 1.86390 1.50242 1.69885 1.31991 1.22258 0.98287 0.97994 1.00241 1.21586 0.99441 0.94900 0.98497 0.93070 0.95861 0.93835 0.93055 0.92740 0.92997 0.92139 0.82254 0.89020 0.91404 0.85330 0.91017 0.89998 0.93329 0.91913 0.77329 0.94464 0.92262 0.89056 0.95423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -13.68 8.56 -34.44 -0.29 -13.98 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.16 2.10 -91.77 -0.19 0.97 16 10 C -0.11 -2.13 4.90 -26.73 -0.13 -2.27 16 11 C -0.10 -1.75 5.64 -26.73 -0.15 -1.90 16 12 C 0.09 1.46 2.71 -67.71 -0.18 1.27 16 13 N -0.68 -10.11 4.74 -98.29 -0.47 -10.58 16 14 C 0.06 0.76 3.20 -66.33 -0.21 0.54 16 15 H 0.05 0.65 7.23 -51.93 -0.38 0.27 16 16 C 0.05 0.60 6.55 -2.18 -0.01 0.59 16 17 N -0.67 -7.63 7.62 -109.66 -0.84 -8.46 16 18 C 0.06 0.67 6.85 -2.18 -0.01 0.66 16 19 C -0.12 -1.54 3.34 -89.24 -0.30 -1.84 16 20 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 21 C 0.09 1.16 5.17 37.16 0.19 1.35 16 22 O -0.58 -7.30 13.48 -35.23 -0.47 -7.78 16 23 C -0.15 -2.73 5.51 -26.73 -0.15 -2.88 16 24 C -0.11 -2.36 4.73 -26.73 -0.13 -2.49 16 25 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 1.03 7.21 -51.93 -0.37 0.65 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.89 7.41 -51.93 -0.38 0.50 16 32 H 0.35 5.84 2.90 -39.29 -0.11 5.73 16 33 H 0.09 1.22 8.06 -51.93 -0.42 0.80 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.33 3.28 8.92 -39.29 -0.35 2.93 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.03 7.81 -51.93 -0.41 0.62 16 38 H 0.05 0.71 6.57 -51.93 -0.34 0.37 16 39 H 0.06 0.84 7.83 -51.93 -0.41 0.43 16 40 H 0.38 3.33 9.12 45.56 0.42 3.75 16 41 H 0.04 0.65 7.39 -51.93 -0.38 0.26 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 44 H 0.03 0.60 6.26 -51.93 -0.32 0.28 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -27.91 326.55 -9.62 -37.53 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -6.70 Total: 11.22 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -1.67 Total: -18.41 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: -0.67 Total: -43.45 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.47 Total: -7.78 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.91 -9.62 -37.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246306597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.278 kcal (2) G-P(sol) polarization free energy of solvation -27.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds