Wall clock time and date at job start Mon Mar 30 2020 01:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00060 * 2 1 4 4 H 1.48500 * 109.47552 * 240.00237 * 3 2 1 5 5 H 1.48503 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47051 * 119.99813 * 3 2 1 7 7 C 1.37880 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99718 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46894 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47240 * 60.00184 * 11 10 9 13 13 N 1.46905 * 109.46865 * 59.99876 * 12 11 10 14 14 C 1.46899 * 111.00051 * 155.00138 * 13 12 11 15 15 H 1.08997 * 110.28417 * 43.74344 * 14 13 12 16 16 C 1.54377 * 110.32168 * 281.50906 * 14 13 12 17 17 N 1.48563 * 104.59557 * 217.24935 * 16 14 13 18 18 C 1.48561 * 104.21879 * 39.48292 * 17 16 14 19 19 C 1.54258 * 110.32193 * 165.87298 * 14 13 12 20 20 H 1.09003 * 110.32291 * 237.78861 * 19 14 13 21 21 C 1.52998 * 110.32826 * 359.89690 * 19 14 13 22 22 O 1.42896 * 109.47090 * 181.67613 * 21 19 14 23 23 C 1.53001 * 109.47150 * 300.00095 * 12 11 10 24 24 C 1.52995 * 109.47126 * 59.99836 * 23 12 11 25 25 H 0.97003 * 120.00144 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46999 * 299.99939 * 9 7 2 27 27 H 1.09003 * 109.46977 * 60.00247 * 10 9 7 28 28 H 1.08995 * 109.47425 * 299.99955 * 10 9 7 29 29 H 1.09003 * 109.47909 * 300.00339 * 11 10 9 30 30 H 1.09003 * 109.47080 * 180.02562 * 11 10 9 31 31 H 1.08998 * 109.47240 * 179.97438 * 12 11 10 32 32 H 1.00904 * 110.99844 * 278.95374 * 13 12 11 33 33 H 1.09002 * 110.41376 * 336.02802 * 16 14 13 34 34 H 1.09000 * 110.41398 * 98.35513 * 16 14 13 35 35 H 1.00896 * 111.00293 * 279.92946 * 17 16 14 36 36 H 1.09000 * 110.41508 * 201.73884 * 18 17 16 37 37 H 1.09001 * 110.41168 * 79.29873 * 18 17 16 38 38 H 1.09001 * 109.46807 * 301.67779 * 21 19 14 39 39 H 1.09002 * 109.47186 * 61.67155 * 21 19 14 40 40 H 0.96705 * 113.99487 * 180.02562 * 22 21 19 41 41 H 1.08994 * 109.46816 * 179.97438 * 23 12 11 42 42 H 1.08993 * 109.46796 * 299.99182 * 23 12 11 43 43 H 1.09003 * 109.47080 * 180.02562 * 24 23 12 44 44 H 1.08995 * 109.47299 * 59.99953 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4803 -4.9870 -0.0033 12 6 0.6003 -5.0674 -1.2523 13 7 1.4446 -4.9888 -2.4520 14 6 0.7895 -5.6305 -3.5996 15 1 -0.2618 -5.3460 -3.6423 16 6 0.9287 -7.1652 -3.5072 17 7 1.1250 -7.6085 -4.9115 18 6 2.0140 -6.5739 -5.4999 19 6 1.5036 -5.2414 -4.9105 20 1 0.8023 -4.7677 -5.5974 21 6 2.6762 -4.3031 -4.6186 22 8 3.2998 -3.9236 -5.8471 23 6 -0.3939 -3.9044 -1.2513 24 6 0.3711 -2.5795 -1.2508 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5575 0.8880 27 1 2.8720 -3.6051 0.8873 28 1 2.8720 -3.6036 -0.8926 29 1 0.8539 -5.0454 0.8868 30 1 2.1887 -5.8156 -0.0036 31 1 0.0556 -6.0115 -1.2529 32 1 1.6862 -4.0319 -2.6621 33 1 1.7933 -7.4327 -2.8998 34 1 0.0221 -7.6048 -3.0912 35 1 0.2452 -7.6515 -5.4035 36 1 1.9239 -6.5683 -6.5862 37 1 3.0485 -6.7488 -5.2043 38 1 2.3105 -3.4130 -4.1066 39 1 3.4017 -4.8141 -3.9855 40 1 4.0536 -3.3277 -5.7379 41 1 -1.0205 -3.9614 -2.1414 42 1 -1.0203 -3.9628 -0.3613 43 1 -0.3372 -1.7509 -1.2497 44 1 0.9975 -2.5212 -2.1409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246306597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:27 Heat of formation + Delta-G solvation = -78.666520 kcal Electronic energy + Delta-G solvation = -22158.595597 eV Core-core repulsion = 19108.887864 eV Total energy + Delta-G solvation = -3049.707732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.93559 -39.21093 -37.25864 -35.53530 -33.75849 -31.75748 -31.29736 -30.30003 -27.77864 -26.43779 -25.73157 -23.25252 -22.96206 -22.24356 -20.56697 -19.48937 -18.53412 -18.37689 -17.37116 -16.92537 -16.57037 -16.15599 -15.91951 -15.48843 -15.07251 -14.82296 -14.42894 -14.33398 -14.00839 -13.90934 -13.49454 -13.24061 -12.92131 -12.84106 -12.75848 -12.53386 -12.34609 -12.17053 -11.96862 -11.89906 -11.75860 -11.71307 -11.53209 -11.12485 -10.96105 -10.66697 -10.52906 -10.32683 -9.74933 -9.20031 -8.07407 -6.21185 1.40083 1.40628 1.48075 2.42664 3.03017 3.18834 3.31482 3.40397 3.72219 3.93150 4.05107 4.11912 4.15743 4.25978 4.38049 4.45394 4.52261 4.55718 4.61716 4.68324 4.78422 4.80979 4.87531 4.90807 4.96108 5.05161 5.08729 5.13804 5.21488 5.26652 5.30197 5.43795 5.49450 5.62986 5.65742 5.70716 6.05742 6.17815 6.26141 6.43057 6.44563 6.46239 6.84147 6.92255 7.47063 8.95634 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021927 B = 0.005559 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.678875 B = 5036.074984 C = 5752.198622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.050 0.950 9 C 0.046 3.954 10 C -0.097 4.097 11 C -0.097 4.097 12 C 0.100 3.900 13 N -0.673 5.673 14 C 0.058 3.942 15 H 0.044 0.956 16 C 0.057 3.943 17 N -0.670 5.670 18 C 0.064 3.936 19 C -0.121 4.121 20 H 0.072 0.928 21 C 0.094 3.906 22 O -0.588 6.588 23 C -0.140 4.140 24 C -0.095 4.095 25 H 0.258 0.742 26 H -0.012 1.012 27 H 0.037 0.963 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.342 0.658 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.343 0.657 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.030 0.970 39 H 0.061 0.939 40 H 0.395 0.605 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.923 -12.440 -8.872 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.773 3.227 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.068 0.932 9 C 0.028 3.972 10 C -0.135 4.135 11 C -0.135 4.135 12 C -0.010 4.010 13 N -0.309 5.309 14 C -0.054 4.054 15 H 0.062 0.938 16 C -0.073 4.073 17 N -0.296 5.296 18 C -0.066 4.066 19 C -0.141 4.141 20 H 0.091 0.909 21 C 0.016 3.984 22 O -0.396 6.396 23 C -0.179 4.179 24 C -0.133 4.133 25 H 0.067 0.933 26 H 0.006 0.994 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.166 0.834 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.159 0.841 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.245 0.755 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.199 -13.814 -8.846 16.551 hybrid contribution -0.733 3.411 0.248 3.497 sum 1.466 -10.403 -8.598 13.576 Atomic orbital electron populations 1.70012 1.07114 1.26900 1.51709 1.25699 0.95575 1.02160 0.95069 0.85779 0.78501 0.79572 0.78812 1.19602 1.21235 1.19837 1.21612 0.92957 0.92403 1.49989 0.93203 1.18620 0.93070 0.92427 0.93083 1.21414 0.97782 0.94488 0.99804 1.21471 0.98476 0.97335 0.96249 1.21460 0.92113 0.96808 0.90632 1.61036 1.43120 1.23695 1.03016 1.22936 0.95761 0.97170 0.89506 0.93841 1.23045 1.02570 0.90647 0.91081 1.63333 1.18133 1.44996 1.03146 1.22860 0.97949 0.86704 0.99092 1.22548 0.96895 0.97960 0.96707 0.90924 1.21986 0.94579 0.96382 0.85495 1.86355 1.51101 1.70436 1.31702 1.22157 0.98514 0.96874 1.00403 1.21325 0.98546 0.95891 0.97570 0.93274 0.99355 0.94450 0.92973 0.92707 0.90833 0.89556 0.83382 0.89922 0.89994 0.84112 0.90188 0.90719 0.95162 0.92091 0.75522 0.93331 0.93037 0.92909 0.95525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.93 11.32 21.45 0.24 -52.68 16 2 C 0.01 0.73 5.30 84.66 0.45 1.18 16 3 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.53 -28.97 8.56 25.60 0.22 -28.75 16 8 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 9 C 0.05 2.27 2.10 -11.54 -0.02 2.24 16 10 C -0.10 -3.87 4.90 30.59 0.15 -3.72 16 11 C -0.10 -3.14 5.64 30.59 0.17 -2.96 16 12 C 0.10 2.99 2.71 44.92 0.12 3.11 16 13 N -0.67 -18.99 4.74 -464.89 -2.20 -21.19 16 14 C 0.06 1.41 3.20 45.81 0.15 1.56 16 15 H 0.04 1.10 7.23 -2.39 -0.02 1.09 16 16 C 0.06 1.20 6.55 86.45 0.57 1.77 16 17 N -0.67 -13.40 7.62 -500.84 -3.82 -17.22 16 18 C 0.06 1.36 6.85 86.45 0.59 1.95 16 19 C -0.12 -2.86 3.34 -9.90 -0.03 -2.90 16 20 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 21 C 0.09 2.39 5.17 71.98 0.37 2.77 16 22 O -0.59 -14.07 13.48 -148.98 -2.01 -16.08 16 23 C -0.14 -5.07 5.51 30.59 0.17 -4.90 16 24 C -0.09 -4.31 4.73 30.59 0.14 -4.17 16 25 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 26 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.05 2.06 7.21 -2.39 -0.02 2.04 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 2.23 7.41 -2.39 -0.02 2.21 16 32 H 0.34 11.07 2.90 -89.69 -0.26 10.81 16 33 H 0.08 1.95 8.06 -2.39 -0.02 1.93 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.34 5.75 8.92 -89.70 -0.80 4.95 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.72 7.81 -2.39 -0.02 1.70 16 38 H 0.03 0.88 6.57 -2.39 -0.02 0.87 16 39 H 0.06 1.56 7.83 -2.39 -0.02 1.55 16 40 H 0.40 6.45 9.12 -74.05 -0.68 5.78 16 41 H 0.05 1.63 7.39 -2.39 -0.02 1.62 16 42 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.05 2.81 6.07 -2.39 -0.01 2.79 16 44 H 0.03 1.18 6.26 -2.39 -0.01 1.17 16 Total: -1.00 -60.14 326.55 -3.45 -63.59 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.73 Total: 30.92 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 3.05 Total: -32.83 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -5.78 Total: -91.09 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -2.01 Total: -16.08 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -60.14 -3.45 -63.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246306597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.076 kcal (2) G-P(sol) polarization free energy of solvation -60.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds