Wall clock time and date at job start Mon Mar 30 2020 01:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48496 * 109.47381 * 239.99919 * 3 2 1 5 5 H 1.48502 * 109.46951 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47135 * 120.00015 * 3 2 1 7 7 C 1.37876 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99706 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47014 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47135 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47144 * 299.99665 * 11 10 9 13 13 N 1.46896 * 109.47302 * 179.97438 * 12 11 10 14 14 C 1.46896 * 111.00060 * 155.00049 * 13 12 11 15 15 H 1.08994 * 110.35647 * 32.85871 * 14 13 12 16 16 C 1.53993 * 110.31028 * 270.71431 * 14 13 12 17 17 N 1.47902 * 107.06238 * 242.30983 * 16 14 13 18 18 C 1.48538 * 105.81682 * 334.67117 * 17 16 14 19 19 C 1.54604 * 110.30775 * 155.00138 * 14 13 12 20 20 H 1.08994 * 110.87699 * 22.44571 * 19 14 13 21 21 C 1.53000 * 110.72150 * 259.22879 * 19 14 13 22 22 O 1.42903 * 109.46726 * 180.02562 * 21 19 14 23 23 C 1.53008 * 109.47071 * 59.99857 * 12 11 10 24 24 C 1.52998 * 109.47253 * 300.00076 * 23 12 11 25 25 H 0.97005 * 120.00228 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47423 * 60.00333 * 9 7 2 27 27 H 1.09001 * 109.47229 * 59.99357 * 10 9 7 28 28 H 1.09003 * 109.47046 * 299.99825 * 10 9 7 29 29 H 1.09000 * 109.47001 * 179.97438 * 11 10 9 30 30 H 1.09004 * 109.46957 * 59.99502 * 11 10 9 31 31 H 1.08996 * 109.47428 * 300.00303 * 12 11 10 32 32 H 1.00905 * 111.00460 * 278.95480 * 13 12 11 33 33 H 1.08999 * 109.91622 * 122.95229 * 16 14 13 34 34 H 1.09002 * 109.91425 * 1.66341 * 16 14 13 35 35 H 1.00899 * 111.00344 * 214.15609 * 17 16 14 36 36 H 1.09004 * 110.66508 * 280.76562 * 18 17 16 37 37 H 1.08998 * 110.80949 * 157.71211 * 18 17 16 38 38 H 1.09002 * 109.47398 * 300.04713 * 21 19 14 39 39 H 1.09001 * 109.47194 * 60.04893 * 21 19 14 40 40 H 0.96700 * 113.99509 * 180.02562 * 22 21 19 41 41 H 1.09001 * 109.46871 * 60.00379 * 23 12 11 42 42 H 1.08999 * 109.46599 * 180.02562 * 23 12 11 43 43 H 1.08996 * 109.46904 * 300.00440 * 24 23 12 44 44 H 1.08997 * 109.46836 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 6 0.6000 -5.0684 1.2469 13 7 -0.1350 -6.3402 1.2461 14 6 -0.5024 -6.7368 2.6119 15 1 -0.6978 -5.8557 3.2230 16 6 0.6173 -7.5861 3.2414 17 7 0.0435 -8.9196 3.5246 18 6 -1.4180 -8.7063 3.6818 19 6 -1.7432 -7.6588 2.5876 20 1 -1.8519 -8.1382 1.6148 21 6 -3.0072 -6.8750 2.9470 22 8 -4.1356 -7.7513 2.9170 23 6 -0.3943 -3.9053 1.2467 24 6 0.3708 -2.5804 1.2472 25 1 -0.4851 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 2.8711 -3.6048 0.8890 28 1 2.8724 -3.6040 -0.8910 29 1 2.1884 -5.8156 -0.0023 30 1 0.8537 -5.0446 -0.8922 31 1 1.2262 -5.0108 2.1371 32 1 -0.9500 -6.2866 0.6536 33 1 0.9577 -7.1239 4.1680 34 1 1.4490 -7.6804 2.5431 35 1 0.4435 -9.3149 4.3623 36 1 -1.6448 -8.3114 4.6722 37 1 -1.9658 -9.6316 3.5035 38 1 -2.9011 -6.4528 3.9463 39 1 -3.1531 -6.0705 2.2262 40 1 -4.9736 -7.3209 3.1351 41 1 -1.0206 -3.9630 0.3565 42 1 -1.0209 -3.9631 2.1367 43 1 0.9971 -2.5229 2.1374 44 1 -0.3375 -1.7519 1.2467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246306611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:30 Heat of formation + Delta-G solvation = -67.569093 kcal Electronic energy + Delta-G solvation = -21429.575138 eV Core-core repulsion = 18380.348627 eV Total energy + Delta-G solvation = -3049.226512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.52525 -37.74726 -36.51375 -34.25123 -32.24136 -30.87658 -29.69462 -28.89150 -26.83287 -24.92316 -24.03555 -21.68362 -21.43518 -20.21672 -20.15134 -18.77634 -17.49469 -16.51795 -16.31352 -16.08716 -15.14002 -14.87455 -14.48778 -13.93494 -13.58794 -13.48178 -13.25012 -13.04185 -12.70411 -12.47052 -12.26613 -11.86345 -11.71813 -11.49421 -11.32420 -11.24371 -10.96534 -10.77123 -10.73097 -10.43034 -10.30681 -10.16602 -10.13416 -9.93778 -9.38177 -8.99986 -8.68322 -8.60235 -8.32615 -8.01019 -5.97132 -4.03137 3.31671 3.36237 3.39193 3.82802 4.20006 4.31964 4.44681 4.55811 4.71290 4.96962 5.16320 5.23806 5.31212 5.31537 5.32872 5.41860 5.54436 5.60660 5.74828 5.79353 5.93205 6.00537 6.07424 6.18500 6.28608 6.39806 6.41319 6.62193 6.67464 6.69479 6.83788 6.93828 7.13767 7.19526 7.22454 7.37854 7.40216 7.52108 7.63528 7.75817 8.03802 8.16023 8.49217 9.01165 9.61434 11.08226 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029985 B = 0.004051 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.566781 B = 6910.227357 C = 7453.464816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.109 4.109 11 C -0.100 4.100 12 C 0.089 3.911 13 N -0.676 5.676 14 C 0.085 3.915 15 H 0.053 0.947 16 C 0.049 3.951 17 N -0.670 5.670 18 C 0.052 3.948 19 C -0.094 4.094 20 H 0.098 0.902 21 C 0.082 3.918 22 O -0.572 6.572 23 C -0.142 4.142 24 C -0.105 4.105 25 H 0.259 0.741 26 H 0.024 0.976 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.340 0.660 33 H 0.036 0.964 34 H 0.093 0.907 35 H 0.334 0.666 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.050 0.950 40 H 0.379 0.621 41 H 0.053 0.947 42 H 0.035 0.965 43 H 0.031 0.969 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 -13.937 7.705 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.147 4.147 11 C -0.138 4.138 12 C -0.020 4.020 13 N -0.306 5.306 14 C -0.026 4.026 15 H 0.071 0.929 16 C -0.081 4.081 17 N -0.298 5.298 18 C -0.078 4.078 19 C -0.113 4.113 20 H 0.116 0.884 21 C 0.003 3.997 22 O -0.377 6.377 23 C -0.181 4.181 24 C -0.144 4.144 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.149 0.851 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.226 0.774 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.239 -14.889 6.836 16.923 hybrid contribution -0.777 2.595 1.331 3.018 sum -5.016 -12.294 8.167 15.588 Atomic orbital electron populations 1.69865 1.05861 1.26324 1.51097 1.24963 0.94825 0.98964 0.95244 0.86715 0.79651 0.83372 0.78588 1.20306 1.21379 1.20377 1.21230 0.92879 0.90850 1.50107 0.92858 1.18646 0.92643 0.91591 0.94077 1.21632 0.98614 0.94378 1.00073 1.21478 0.97880 0.97910 0.96528 1.21695 0.94995 0.86103 0.99172 1.60788 1.28434 1.32990 1.08381 1.22268 0.92720 0.96095 0.91503 0.92919 1.22762 0.98165 0.88156 0.99003 1.63060 1.03605 1.22621 1.40548 1.22931 0.89377 0.99101 0.96381 1.22258 0.92029 0.95957 1.01087 0.88373 1.22234 0.85909 0.91898 0.99628 1.86468 1.17992 1.39599 1.93626 1.22290 0.98116 0.98159 0.99568 1.21551 0.99463 0.94518 0.98839 0.93111 0.95791 0.93587 0.93367 0.92987 0.92785 0.91281 0.84178 0.94549 0.88914 0.85058 0.94428 0.89819 0.93712 0.93185 0.77435 0.92782 0.94633 0.94989 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.00 8.56 -34.44 -0.29 -14.30 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.19 2.10 -91.77 -0.19 1.00 16 10 C -0.11 -2.25 5.14 -26.73 -0.14 -2.38 16 11 C -0.10 -1.76 5.53 -26.73 -0.15 -1.91 16 12 C 0.09 1.47 2.32 -67.71 -0.16 1.31 16 13 N -0.68 -9.54 5.94 -98.32 -0.58 -10.12 16 14 C 0.09 1.07 2.66 -66.35 -0.18 0.89 16 15 H 0.05 0.70 6.90 -51.93 -0.36 0.34 16 16 C 0.05 0.60 7.26 -2.75 -0.02 0.58 16 17 N -0.67 -7.55 7.51 -110.08 -0.83 -8.37 16 18 C 0.05 0.56 6.85 -1.90 -0.01 0.54 16 19 C -0.09 -1.08 2.79 -88.76 -0.25 -1.33 16 20 H 0.10 1.27 7.96 -51.93 -0.41 0.85 16 21 C 0.08 0.84 6.35 37.16 0.24 1.07 16 22 O -0.57 -5.69 13.50 -35.23 -0.48 -6.16 16 23 C -0.14 -2.61 5.16 -26.73 -0.14 -2.75 16 24 C -0.11 -2.40 4.98 -26.73 -0.13 -2.54 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.17 7.83 -51.93 -0.41 0.77 16 32 H 0.34 4.70 8.07 -39.29 -0.32 4.38 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 1.27 7.93 -51.93 -0.41 0.86 16 35 H 0.33 3.09 8.92 -39.29 -0.35 2.74 16 36 H 0.04 0.38 8.02 -51.93 -0.42 -0.04 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.04 0.43 8.10 -51.93 -0.42 0.01 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.38 2.12 9.12 45.56 0.42 2.53 16 41 H 0.05 1.02 8.13 -51.93 -0.42 0.59 16 42 H 0.03 0.60 7.49 -51.93 -0.39 0.21 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 2.34 6.07 -51.93 -0.31 2.03 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -28.99 337.98 -9.85 -38.84 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.15 Total: 7.40 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -1.52 Total: -18.23 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.78 Total: -43.15 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.48 Total: -6.16 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.99 -9.85 -38.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246306611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.725 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds