Wall clock time and date at job start Mon Mar 30 2020 01:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48496 * 109.47381 * 239.99919 * 3 2 1 5 5 H 1.48502 * 109.46951 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47135 * 120.00015 * 3 2 1 7 7 C 1.37876 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99706 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47014 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47135 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47144 * 299.99665 * 11 10 9 13 13 N 1.46896 * 109.47302 * 179.97438 * 12 11 10 14 14 C 1.46896 * 111.00060 * 155.00049 * 13 12 11 15 15 H 1.08994 * 110.35647 * 32.85871 * 14 13 12 16 16 C 1.53993 * 110.31028 * 270.71431 * 14 13 12 17 17 N 1.47902 * 107.06238 * 242.30983 * 16 14 13 18 18 C 1.48538 * 105.81682 * 334.67117 * 17 16 14 19 19 C 1.54604 * 110.30775 * 155.00138 * 14 13 12 20 20 H 1.08994 * 110.87699 * 22.44571 * 19 14 13 21 21 C 1.53000 * 110.72150 * 259.22879 * 19 14 13 22 22 O 1.42903 * 109.46726 * 180.02562 * 21 19 14 23 23 C 1.53008 * 109.47071 * 59.99857 * 12 11 10 24 24 C 1.52998 * 109.47253 * 300.00076 * 23 12 11 25 25 H 0.97005 * 120.00228 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47423 * 60.00333 * 9 7 2 27 27 H 1.09001 * 109.47229 * 59.99357 * 10 9 7 28 28 H 1.09003 * 109.47046 * 299.99825 * 10 9 7 29 29 H 1.09000 * 109.47001 * 179.97438 * 11 10 9 30 30 H 1.09004 * 109.46957 * 59.99502 * 11 10 9 31 31 H 1.08996 * 109.47428 * 300.00303 * 12 11 10 32 32 H 1.00905 * 111.00460 * 278.95480 * 13 12 11 33 33 H 1.08999 * 109.91622 * 122.95229 * 16 14 13 34 34 H 1.09002 * 109.91425 * 1.66341 * 16 14 13 35 35 H 1.00899 * 111.00344 * 214.15609 * 17 16 14 36 36 H 1.09004 * 110.66508 * 280.76562 * 18 17 16 37 37 H 1.08998 * 110.80949 * 157.71211 * 18 17 16 38 38 H 1.09002 * 109.47398 * 300.04713 * 21 19 14 39 39 H 1.09001 * 109.47194 * 60.04893 * 21 19 14 40 40 H 0.96700 * 113.99509 * 180.02562 * 22 21 19 41 41 H 1.09001 * 109.46871 * 60.00379 * 23 12 11 42 42 H 1.08999 * 109.46599 * 180.02562 * 23 12 11 43 43 H 1.08996 * 109.46904 * 300.00440 * 24 23 12 44 44 H 1.08997 * 109.46836 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 6 0.6000 -5.0684 1.2469 13 7 -0.1350 -6.3402 1.2461 14 6 -0.5024 -6.7368 2.6119 15 1 -0.6978 -5.8557 3.2230 16 6 0.6173 -7.5861 3.2414 17 7 0.0435 -8.9196 3.5246 18 6 -1.4180 -8.7063 3.6818 19 6 -1.7432 -7.6588 2.5876 20 1 -1.8519 -8.1382 1.6148 21 6 -3.0072 -6.8750 2.9470 22 8 -4.1356 -7.7513 2.9170 23 6 -0.3943 -3.9053 1.2467 24 6 0.3708 -2.5804 1.2472 25 1 -0.4851 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 2.8711 -3.6048 0.8890 28 1 2.8724 -3.6040 -0.8910 29 1 2.1884 -5.8156 -0.0023 30 1 0.8537 -5.0446 -0.8922 31 1 1.2262 -5.0108 2.1371 32 1 -0.9500 -6.2866 0.6536 33 1 0.9577 -7.1239 4.1680 34 1 1.4490 -7.6804 2.5431 35 1 0.4435 -9.3149 4.3623 36 1 -1.6448 -8.3114 4.6722 37 1 -1.9658 -9.6316 3.5035 38 1 -2.9011 -6.4528 3.9463 39 1 -3.1531 -6.0705 2.2262 40 1 -4.9736 -7.3209 3.1351 41 1 -1.0206 -3.9630 0.3565 42 1 -1.0209 -3.9631 2.1367 43 1 0.9971 -2.5229 2.1374 44 1 -0.3375 -1.7519 1.2467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246306611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:30 Heat of formation + Delta-G solvation = -90.071333 kcal Electronic energy + Delta-G solvation = -21430.550909 eV Core-core repulsion = 18380.348627 eV Total energy + Delta-G solvation = -3050.202282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.58341 -39.14990 -37.33290 -35.77315 -33.98177 -31.89079 -31.32935 -30.32725 -28.11078 -26.18318 -25.44465 -23.26709 -22.71181 -21.48534 -21.23884 -20.35395 -18.38387 -18.31143 -17.39610 -17.05543 -16.71064 -16.22576 -15.83849 -14.96588 -14.92711 -14.80743 -14.53872 -14.28454 -14.12208 -13.98432 -13.64783 -13.19348 -13.02425 -12.88771 -12.71430 -12.65277 -12.47072 -12.21680 -12.05026 -11.95136 -11.78422 -11.72366 -11.63163 -11.17419 -10.93611 -10.77803 -10.57389 -10.36820 -9.46248 -9.28059 -8.06740 -6.20794 1.41123 1.41815 1.49448 2.43682 3.00174 3.16517 3.19724 3.43806 3.66161 3.84382 3.95402 4.09854 4.15175 4.28616 4.37206 4.43039 4.47850 4.53323 4.58748 4.60963 4.67072 4.78894 4.83076 4.84095 4.93512 5.00569 5.09886 5.12540 5.16100 5.25422 5.35912 5.41110 5.47890 5.61355 5.68902 5.78149 6.05227 6.18278 6.21883 6.40525 6.43756 6.50406 6.85021 6.91967 7.47160 8.96411 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029985 B = 0.004051 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.566781 B = 6910.227357 C = 7453.464816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.101 4.101 11 C -0.092 4.092 12 C 0.104 3.896 13 N -0.671 5.671 14 C 0.085 3.915 15 H 0.052 0.948 16 C 0.051 3.949 17 N -0.678 5.678 18 C 0.056 3.944 19 C -0.091 4.091 20 H 0.083 0.917 21 C 0.086 3.914 22 O -0.585 6.585 23 C -0.130 4.130 24 C -0.097 4.097 25 H 0.259 0.741 26 H -0.009 1.009 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.342 0.658 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.347 0.653 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.397 0.603 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.025 0.975 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 -14.864 8.759 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.068 0.932 9 C 0.027 3.973 10 C -0.140 4.140 11 C -0.130 4.130 12 C -0.006 4.006 13 N -0.301 5.301 14 C -0.026 4.026 15 H 0.070 0.930 16 C -0.079 4.079 17 N -0.308 5.308 18 C -0.073 4.073 19 C -0.111 4.111 20 H 0.101 0.899 21 C 0.007 3.993 22 O -0.393 6.393 23 C -0.169 4.169 24 C -0.136 4.136 25 H 0.068 0.932 26 H 0.009 0.991 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.161 0.839 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.163 0.837 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.247 0.753 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.167 -15.831 7.900 18.177 hybrid contribution -0.834 2.865 0.992 3.144 sum -5.001 -12.967 8.891 16.498 Atomic orbital electron populations 1.70009 1.07088 1.26972 1.51579 1.25710 0.95649 1.02212 0.94947 0.85744 0.78502 0.79421 0.78790 1.19805 1.20986 1.19685 1.21637 0.93026 0.92528 1.50267 0.93215 1.18629 0.93102 0.92277 0.93315 1.21497 0.97910 0.94578 0.99965 1.21383 0.98082 0.96538 0.97033 1.21442 0.94402 0.86271 0.98495 1.60748 1.28716 1.31043 1.09612 1.22309 0.93580 0.96323 0.90368 0.92988 1.22682 0.97486 0.88617 0.99105 1.63009 1.03965 1.22186 1.41617 1.22900 0.88991 0.98837 0.96616 1.22193 0.92238 0.95929 1.00707 0.89855 1.22144 0.85605 0.91489 1.00035 1.86420 1.18951 1.40180 1.93764 1.22148 0.98199 0.96511 1.00064 1.21331 0.98670 0.95931 0.97673 0.93187 0.99075 0.93432 0.93699 0.91177 0.93169 0.91191 0.83854 0.93484 0.90366 0.83696 0.93269 0.89922 0.92685 0.93554 0.75279 0.93447 0.92932 0.95569 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.03 11.32 21.45 0.24 -52.79 16 2 C 0.01 0.73 5.30 84.65 0.45 1.18 16 3 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.54 -29.82 8.56 25.60 0.22 -29.60 16 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 9 C 0.05 2.26 2.10 -11.54 -0.02 2.23 16 10 C -0.10 -4.17 5.14 30.60 0.16 -4.01 16 11 C -0.09 -3.14 5.53 30.59 0.17 -2.97 16 12 C 0.10 3.25 2.32 44.92 0.10 3.35 16 13 N -0.67 -17.79 5.94 -464.99 -2.76 -20.55 16 14 C 0.08 1.96 2.66 45.80 0.12 2.09 16 15 H 0.05 1.24 6.90 -2.39 -0.02 1.23 16 16 C 0.05 1.14 7.26 86.45 0.63 1.76 16 17 N -0.68 -13.80 7.51 -502.19 -3.77 -17.57 16 18 C 0.06 1.08 6.85 86.65 0.59 1.67 16 19 C -0.09 -1.93 2.79 -9.59 -0.03 -1.95 16 20 H 0.08 2.03 7.96 -2.39 -0.02 2.01 16 21 C 0.09 1.58 6.35 71.98 0.46 2.04 16 22 O -0.58 -10.44 13.50 -148.98 -2.01 -12.45 16 23 C -0.13 -4.70 5.16 30.60 0.16 -4.54 16 24 C -0.10 -4.52 4.98 30.59 0.15 -4.36 16 25 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 26 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 2.23 7.83 -2.39 -0.02 2.21 16 32 H 0.34 8.94 8.07 -89.69 -0.72 8.21 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.99 7.93 -2.39 -0.02 1.97 16 35 H 0.35 5.59 8.92 -89.69 -0.80 4.79 16 36 H 0.05 0.85 8.02 -2.39 -0.02 0.83 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.40 3.60 9.12 -74.06 -0.68 2.92 16 41 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 42 H 0.05 1.71 7.49 -2.39 -0.02 1.70 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 2.99 6.07 -2.39 -0.01 2.97 16 Total: -1.00 -62.14 337.98 -4.33 -66.46 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -1.21 Total: 24.23 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 3.16 Total: -33.11 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -6.29 Total: -90.92 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -2.01 Total: -12.45 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -62.14 -4.33 -66.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246306611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.607 kcal (2) G-P(sol) polarization free energy of solvation -62.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds