Wall clock time and date at job start Mon Mar 30 2020 01:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00040 * 2 1 4 4 H 1.48499 * 109.47504 * 270.00193 * 3 2 1 5 5 H 1.48497 * 109.47092 * 30.00547 * 3 2 1 6 6 H 1.48503 * 109.46885 * 150.00668 * 3 2 1 7 7 C 1.37880 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47071 * 300.00123 * 10 9 7 12 12 C 1.53002 * 109.46815 * 299.99927 * 11 10 9 13 13 N 1.46905 * 109.46791 * 179.97438 * 12 11 10 14 14 C 1.46851 * 110.99920 * 56.04570 * 13 12 11 15 15 C 1.53035 * 109.52007 * 174.16014 * 14 13 12 16 16 C 1.53114 * 109.28054 * 59.18012 * 15 14 13 17 17 H 1.09007 * 109.57619 * 62.27816 * 16 15 14 18 18 N 1.46900 * 109.52408 * 182.43495 * 16 15 14 19 19 C 1.53119 * 109.16060 * 302.34563 * 16 15 14 20 20 H 1.09001 * 109.50224 * 297.66975 * 19 16 15 21 21 O 1.42905 * 109.50256 * 177.59612 * 19 16 15 22 22 C 1.46842 * 110.99977 * 291.83907 * 13 12 11 23 23 C 1.53001 * 109.47241 * 60.00177 * 12 11 10 24 24 C 1.52998 * 109.47245 * 60.00539 * 9 7 2 25 25 H 0.97004 * 120.00271 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47640 * 300.00184 * 9 7 2 27 27 H 1.08996 * 109.47279 * 179.97438 * 10 9 7 28 28 H 1.08997 * 109.47123 * 60.00026 * 10 9 7 29 29 H 1.08998 * 109.47279 * 179.97438 * 11 10 9 30 30 H 1.08996 * 109.47184 * 59.99801 * 11 10 9 31 31 H 1.08996 * 109.47142 * 299.99900 * 12 11 10 32 32 H 1.08998 * 109.46054 * 54.14672 * 14 13 12 33 33 H 1.09002 * 109.46047 * 294.17655 * 14 13 12 34 34 H 1.08997 * 109.50755 * 299.23720 * 15 14 13 35 35 H 1.09005 * 109.50046 * 179.11871 * 15 14 13 36 36 H 1.00896 * 111.00691 * 299.68709 * 18 16 15 37 37 H 1.00908 * 110.99614 * 63.64227 * 18 16 15 38 38 H 0.96696 * 114.00036 * 179.97438 * 21 19 16 39 39 H 1.08996 * 109.46619 * 65.82137 * 22 13 12 40 40 H 1.09002 * 109.45964 * 305.85337 * 22 13 12 41 41 H 1.08996 * 109.47279 * 59.99806 * 23 12 11 42 42 H 1.08997 * 109.47123 * 179.97438 * 23 12 11 43 43 H 1.08996 * 109.47165 * 179.97438 * 24 9 7 44 44 H 1.08998 * 109.46889 * 299.99774 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 3.1248 -3.5811 -1.2498 12 6 2.2451 -3.6621 -2.4990 13 7 3.0897 -3.5836 -3.6985 14 6 4.1195 -4.6305 -3.6863 15 6 4.8840 -4.6110 -5.0119 16 6 5.5297 -3.2359 -5.2030 17 1 6.2491 -3.0560 -4.4041 18 7 6.2164 -3.1921 -6.5009 19 6 4.4413 -2.1597 -5.1633 20 1 3.7448 -2.3160 -5.9871 21 8 5.0421 -0.8688 -5.2850 22 6 3.6896 -2.2502 -3.8333 23 6 1.2509 -2.4991 -2.4990 24 6 0.3709 -2.5800 -1.2495 25 1 -0.4851 0.8401 0.0004 26 1 0.6246 -2.5571 0.8897 27 1 1.7002 -4.6060 -0.0001 28 1 2.8718 -3.6044 0.8894 29 1 3.8334 -4.4093 -1.2496 30 1 3.6698 -2.6371 -1.2498 31 1 1.7001 -4.6060 -2.4990 32 1 3.6466 -5.6036 -3.5540 33 1 4.8124 -4.4488 -2.8647 34 1 4.1941 -4.8063 -5.8329 35 1 5.6586 -5.3778 -4.9965 36 1 6.9398 -3.8938 -6.5512 37 1 5.5603 -3.2940 -7.2607 38 1 4.4097 -0.1375 -5.2679 39 1 4.3845 -2.0797 -3.0111 40 1 2.9045 -1.4945 -3.8078 41 1 1.7959 -1.5552 -2.4990 42 1 0.6246 -2.5566 -3.3892 43 1 -0.1737 -3.5241 -1.2497 44 1 -0.3373 -1.7515 -1.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246569159.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:11 Heat of formation + Delta-G solvation = -82.856480 kcal Electronic energy + Delta-G solvation = -22494.110931 eV Core-core repulsion = 19444.221509 eV Total energy + Delta-G solvation = -3049.889423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13106 -39.06102 -36.85368 -35.69762 -34.02032 -31.84838 -31.11099 -30.56739 -28.66706 -26.60747 -24.65064 -24.08386 -22.85506 -21.88323 -20.96949 -20.06934 -18.26433 -17.78239 -17.18480 -16.81638 -16.62211 -16.05667 -15.90719 -15.26555 -15.05123 -14.86634 -14.56485 -14.45482 -14.02452 -13.83584 -13.42486 -13.25152 -13.15038 -12.88053 -12.81531 -12.65233 -12.48441 -12.38526 -12.09015 -11.97261 -11.79492 -11.44115 -11.23910 -10.98519 -10.92317 -10.66907 -10.53658 -10.28917 -9.54713 -9.13952 -8.04093 -6.13761 1.37187 1.40520 1.47921 2.43631 2.84883 3.23952 3.31353 3.56445 3.78811 4.00368 4.05632 4.08348 4.21240 4.22054 4.30535 4.38913 4.54671 4.66883 4.70012 4.73463 4.81249 4.85661 4.91406 4.92636 4.95922 4.97730 5.02202 5.11383 5.18649 5.29717 5.39998 5.48767 5.64781 5.69258 5.73512 5.90867 6.15115 6.18119 6.24153 6.28862 6.46009 6.65075 6.85906 6.95602 7.51897 9.00454 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020370 B = 0.006613 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.219376 B = 4232.763322 C = 5091.293469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.018 3.982 3 Si 0.934 3.066 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.502 4.502 8 H 0.045 0.955 9 C 0.037 3.963 10 C -0.098 4.098 11 C -0.127 4.127 12 C 0.101 3.899 13 N -0.524 5.524 14 C 0.049 3.951 15 C -0.134 4.134 16 C 0.101 3.899 17 H 0.064 0.936 18 N -0.841 5.841 19 C 0.122 3.878 20 H 0.064 0.936 21 O -0.571 6.571 22 C 0.025 3.975 23 C -0.085 4.085 24 C -0.101 4.101 25 H 0.257 0.743 26 H -0.012 1.012 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.350 0.650 37 H 0.345 0.655 38 H 0.386 0.614 39 H 0.023 0.977 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.029 0.971 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.086 -9.624 -11.583 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.180 4.180 3 Si 0.761 3.239 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.019 3.981 10 C -0.136 4.136 11 C -0.166 4.166 12 C -0.007 4.007 13 N -0.249 5.249 14 C -0.080 4.080 15 C -0.174 4.174 16 C -0.011 4.011 17 H 0.082 0.918 18 N -0.371 5.371 19 C 0.063 3.937 20 H 0.082 0.918 21 O -0.377 6.377 22 C -0.104 4.104 23 C -0.123 4.123 24 C -0.140 4.140 25 H 0.067 0.933 26 H 0.006 0.994 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.234 0.766 39 H 0.042 0.958 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.440 -9.181 -11.849 17.202 hybrid contribution -0.340 0.829 1.236 1.527 sum 8.100 -8.351 -10.614 15.748 Atomic orbital electron populations 1.69995 1.06885 1.26615 1.52127 1.25537 0.95389 1.01490 0.95560 0.85925 0.78802 0.80905 0.78286 1.20011 1.21287 1.19976 1.21306 0.92283 0.91566 1.48908 0.93637 1.18698 0.93160 0.92962 0.93278 1.21403 0.97630 0.97860 0.96739 1.21956 0.98245 1.00487 0.95882 1.21587 0.93328 0.99056 0.86753 1.62248 1.21552 1.02759 1.38305 1.22174 0.93086 0.95636 0.97069 1.22346 0.99996 0.97134 0.97893 1.21368 0.94219 0.92641 0.92840 0.91789 1.58719 1.17610 1.57740 1.03037 1.21739 0.93339 0.83657 0.95008 0.91844 1.86545 1.38843 1.15945 1.96331 1.22795 0.97718 0.92574 0.97339 1.21340 0.96765 0.97564 0.96626 1.21356 0.98340 0.98779 0.95513 0.93337 0.99369 0.92845 0.94191 0.91925 0.93582 0.89894 0.89414 0.95007 0.90395 0.88960 0.83622 0.84121 0.76568 0.95831 0.91013 0.93245 0.93426 0.95273 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.28 11.32 21.45 0.24 -52.04 16 2 C 0.02 1.00 5.30 84.66 0.45 1.45 16 3 Si 0.93 43.57 29.54 68.60 2.03 45.60 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.50 -26.73 6.61 25.60 0.17 -26.56 16 8 H 0.05 2.44 6.71 -2.91 -0.02 2.42 16 9 C 0.04 1.83 2.58 -11.54 -0.03 1.80 16 10 C -0.10 -3.93 5.41 30.60 0.17 -3.76 16 11 C -0.13 -4.52 4.26 30.60 0.13 -4.39 16 12 C 0.10 3.37 2.37 44.92 0.11 3.48 16 13 N -0.52 -15.07 4.71 -871.12 -4.10 -19.17 16 14 C 0.05 1.13 4.77 86.32 0.41 1.54 16 15 C -0.13 -2.47 5.67 30.64 0.17 -2.29 16 16 C 0.10 2.29 2.99 44.99 0.13 2.43 16 17 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 18 N -0.84 -16.26 9.17 -168.35 -1.54 -17.80 16 19 C 0.12 3.21 3.21 30.65 0.10 3.30 16 20 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 21 O -0.57 -16.15 13.23 -148.98 -1.97 -18.12 16 22 C 0.02 0.77 4.29 86.33 0.37 1.14 16 23 C -0.09 -3.41 4.48 30.61 0.14 -3.28 16 24 C -0.10 -4.65 5.24 30.61 0.16 -4.49 16 25 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 26 H -0.01 -0.66 8.14 -2.39 -0.02 -0.67 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.93 6.48 -2.39 -0.02 1.91 16 30 H 0.05 1.88 5.22 -2.39 -0.01 1.87 16 31 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.09 1.82 8.12 -2.39 -0.02 1.80 16 33 H 0.03 0.80 6.59 -2.39 -0.02 0.78 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.35 5.20 9.04 -89.70 -0.81 4.39 16 37 H 0.35 5.77 8.98 -89.69 -0.81 4.97 16 38 H 0.39 8.58 9.08 -74.06 -0.67 7.90 16 39 H 0.02 0.83 6.81 -2.39 -0.02 0.81 16 40 H 0.07 2.46 5.84 -2.39 -0.01 2.44 16 41 H 0.05 2.22 5.26 -2.39 -0.01 2.21 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 44 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 Total: -1.00 -61.09 320.42 -4.15 -65.24 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -1.27 Total: 25.92 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 2.48 Total: -29.63 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -5.40 Total: -89.01 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -1.97 Total: -18.12 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -61.09 -4.15 -65.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246569159.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.616 kcal (2) G-P(sol) polarization free energy of solvation -61.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds