Wall clock time and date at job start Mon Mar 30 2020 01:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99862 * 2 1 4 4 H 1.48494 * 109.47310 * 270.00115 * 3 2 1 5 5 H 1.48506 * 109.47141 * 30.00292 * 3 2 1 6 6 H 1.48500 * 109.46989 * 150.00072 * 3 2 1 7 7 C 1.37871 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00206 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47016 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47107 * 299.99939 * 10 9 7 12 12 C 1.52998 * 109.47446 * 299.99994 * 11 10 9 13 13 N 1.46897 * 109.47378 * 180.02562 * 12 11 10 14 14 C 1.47904 * 110.99932 * 63.49539 * 13 12 11 15 15 C 1.53993 * 107.05749 * 145.84841 * 14 13 12 16 16 H 1.09005 * 110.30582 * 239.86166 * 15 14 13 17 17 O 1.42899 * 110.31202 * 117.78750 * 15 14 13 18 18 C 1.54598 * 105.22495 * 358.82251 * 15 14 13 19 19 H 1.08999 * 110.72627 * 96.35247 * 18 15 14 20 20 C 1.53001 * 110.72249 * 219.63779 * 18 15 14 21 21 N 1.46902 * 109.47057 * 293.54739 * 20 18 15 22 22 C 1.48534 * 110.99941 * 180.89372 * 13 12 11 23 23 C 1.52999 * 109.46963 * 59.99918 * 12 11 10 24 24 C 1.52999 * 109.46952 * 59.99945 * 9 7 2 25 25 H 0.97001 * 120.00324 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47142 * 300.00148 * 9 7 2 27 27 H 1.09004 * 109.47028 * 179.97438 * 10 9 7 28 28 H 1.09001 * 109.47082 * 60.00546 * 10 9 7 29 29 H 1.08999 * 109.46758 * 180.02562 * 11 10 9 30 30 H 1.08997 * 109.47065 * 60.00191 * 11 10 9 31 31 H 1.09004 * 109.46810 * 300.00321 * 12 11 10 32 32 H 1.09000 * 109.91696 * 26.49153 * 14 13 12 33 33 H 1.09004 * 110.08022 * 265.29029 * 14 13 12 34 34 H 0.96698 * 113.99812 * 62.78754 * 17 15 14 35 35 H 1.09001 * 109.47025 * 53.54751 * 20 18 15 36 36 H 1.09002 * 109.46982 * 173.54307 * 20 18 15 37 37 H 1.00894 * 110.99792 * 56.04484 * 21 20 18 38 38 H 1.00900 * 111.00044 * 180.02562 * 21 20 18 39 39 H 1.09000 * 110.66628 * 318.70735 * 22 13 12 40 40 H 1.08999 * 110.66584 * 81.67941 * 22 13 12 41 41 H 1.08997 * 109.47002 * 60.00137 * 23 12 11 42 42 H 1.08997 * 109.46997 * 180.02562 * 23 12 11 43 43 H 1.08999 * 109.46939 * 179.97438 * 24 9 7 44 44 H 1.08999 * 109.47413 * 300.00267 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 3.1249 -3.5810 -1.2498 12 6 2.2453 -3.6620 -2.4990 13 7 3.0899 -3.5848 -3.6984 14 6 4.0086 -4.7414 -3.7751 15 6 4.1814 -5.0829 -5.2667 16 1 3.8498 -6.1028 -5.4621 17 8 5.5465 -4.9225 -5.6574 18 6 3.2853 -4.0737 -6.0207 19 1 3.8702 -3.2208 -6.3652 20 6 2.5729 -4.7523 -7.1925 21 7 3.5627 -5.1542 -8.2008 22 6 2.2666 -3.6390 -4.9336 23 6 1.2511 -2.4991 -2.4990 24 6 0.3709 -2.5799 -1.2495 25 1 -0.4851 0.8400 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 1.7003 -4.6060 -0.0001 28 1 2.8719 -3.6043 0.8895 29 1 3.8329 -4.4097 -1.2499 30 1 3.6698 -2.6370 -1.2498 31 1 1.7003 -4.6060 -2.4990 32 1 3.5791 -5.5924 -3.2466 33 1 4.9736 -4.4824 -3.3393 34 1 6.1587 -5.5155 -5.2006 35 1 2.0416 -5.6336 -6.8334 36 1 1.8623 -4.0561 -7.6380 37 1 4.2701 -5.7490 -7.7961 38 1 3.1167 -5.6048 -8.9858 39 1 1.4715 -4.3778 -4.8338 40 1 1.8517 -2.6575 -5.1627 41 1 1.7960 -1.5552 -2.4990 42 1 0.6242 -2.5571 -3.3888 43 1 -0.1737 -3.5240 -1.2497 44 1 -0.3374 -1.7514 -1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246582780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:13 Heat of formation + Delta-G solvation = -61.680322 kcal Electronic energy + Delta-G solvation = -21938.148521 eV Core-core repulsion = 18889.177365 eV Total energy + Delta-G solvation = -3048.971156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77568 -37.59910 -35.51524 -34.77490 -32.33694 -30.50502 -29.92169 -28.36357 -27.30225 -24.76216 -23.86505 -22.10081 -21.46885 -20.18090 -19.64377 -18.66460 -17.41542 -16.31938 -15.90417 -15.54036 -15.20285 -14.80270 -14.44000 -13.96934 -13.61845 -13.47951 -13.33777 -12.99479 -12.75561 -12.46404 -12.22513 -11.87083 -11.47782 -11.39733 -11.08065 -10.94199 -10.88313 -10.73300 -10.53043 -10.50113 -10.31972 -10.05579 -10.01796 -9.56113 -9.14210 -8.85620 -8.81159 -8.57579 -8.23205 -8.05289 -5.90758 -3.94441 3.36634 3.43262 3.46715 4.04593 4.12783 4.36161 4.51302 4.61629 4.79051 4.98361 5.14693 5.24282 5.40137 5.47043 5.54118 5.59202 5.61801 5.69033 5.73688 5.98269 6.03676 6.06271 6.25609 6.27044 6.45218 6.51089 6.57171 6.71662 6.75989 6.84242 6.94756 7.10721 7.19786 7.25501 7.27434 7.40110 7.55930 7.58368 7.68519 7.80338 7.98202 8.20594 8.54712 9.07559 9.68842 11.15300 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025257 B = 0.004844 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.333091 B = 5779.210114 C = 5933.237254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.884 3.116 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.497 4.497 8 H 0.055 0.945 9 C 0.044 3.956 10 C -0.106 4.106 11 C -0.096 4.096 12 C 0.086 3.914 13 N -0.504 5.504 14 C 0.007 3.993 15 C 0.098 3.902 16 H 0.052 0.948 17 O -0.554 6.554 18 C -0.084 4.084 19 H 0.102 0.898 20 C 0.071 3.929 21 N -0.847 5.847 22 C 0.044 3.956 23 C -0.091 4.091 24 C -0.107 4.107 25 H 0.258 0.742 26 H 0.023 0.977 27 H 0.030 0.970 28 H 0.047 0.953 29 H 0.032 0.968 30 H 0.079 0.921 31 H 0.025 0.975 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.373 0.627 35 H 0.024 0.976 36 H 0.077 0.923 37 H 0.343 0.657 38 H 0.337 0.663 39 H 0.042 0.958 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.030 0.970 43 H 0.010 0.990 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.106 -12.396 -11.244 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.712 3.288 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.025 3.975 10 C -0.144 4.144 11 C -0.133 4.133 12 C -0.021 4.021 13 N -0.228 5.228 14 C -0.121 4.121 15 C 0.039 3.961 16 H 0.069 0.931 17 O -0.358 6.358 18 C -0.103 4.103 19 H 0.121 0.879 20 C -0.060 4.060 21 N -0.377 5.377 22 C -0.084 4.084 23 C -0.129 4.129 24 C -0.145 4.145 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.098 0.902 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.220 0.780 35 H 0.042 0.958 36 H 0.096 0.904 37 H 0.156 0.844 38 H 0.149 0.851 39 H 0.060 0.940 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.049 0.951 43 H 0.029 0.971 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.139 -10.541 -11.633 16.518 hybrid contribution -0.162 -1.321 0.613 1.466 sum 4.976 -11.863 -11.020 16.939 Atomic orbital electron populations 1.69866 1.05833 1.26119 1.51473 1.24916 0.94738 0.98788 0.95463 0.86716 0.79923 0.84003 0.78111 1.20712 1.21484 1.20046 1.21141 0.92751 0.90348 1.49334 0.92651 1.18689 0.92635 0.92143 0.93996 1.21558 0.98302 0.98520 0.96056 1.21432 0.97072 1.01325 0.93507 1.21914 0.93415 0.97736 0.89085 1.64795 1.17144 1.38912 1.01937 1.23601 0.99447 0.93193 0.95900 1.22738 0.82798 0.97245 0.93355 0.93058 1.86623 1.16758 1.64734 1.67686 1.22209 0.95577 0.98804 0.93728 0.87946 1.21758 0.93796 0.98276 0.92200 1.58616 1.16692 1.51126 1.11275 1.23233 0.94412 1.01497 0.89301 1.21436 0.96013 0.98238 0.97233 1.21532 0.98697 0.99231 0.95061 0.93237 0.95863 0.95160 0.93391 0.94928 0.90248 0.95711 0.93862 0.89764 0.78046 0.95817 0.90448 0.84359 0.85076 0.93978 0.89253 0.90143 0.95102 0.97112 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.50 -13.28 6.61 -34.44 -0.23 -13.51 16 8 H 0.06 1.49 6.71 -52.49 -0.35 1.13 16 9 C 0.04 1.07 2.58 -91.77 -0.24 0.84 16 10 C -0.11 -2.21 5.41 -26.73 -0.14 -2.35 16 11 C -0.10 -1.84 4.94 -26.73 -0.13 -1.97 16 12 C 0.09 1.58 1.64 -67.72 -0.11 1.47 16 13 N -0.50 -8.27 5.11 -222.33 -1.14 -9.40 16 14 C 0.01 0.10 5.30 -2.75 -0.01 0.08 16 15 C 0.10 1.14 3.16 -25.37 -0.08 1.06 16 16 H 0.05 0.52 7.80 -51.93 -0.41 0.11 16 17 O -0.55 -6.28 12.98 -35.23 -0.46 -6.74 16 18 C -0.08 -1.05 3.07 -88.62 -0.27 -1.33 16 19 H 0.10 1.52 8.08 -51.93 -0.42 1.10 16 20 C 0.07 0.74 6.18 -3.82 -0.02 0.71 16 21 N -0.85 -8.28 9.62 -10.37 -0.10 -8.38 16 22 C 0.04 0.63 4.83 -1.76 -0.01 0.62 16 23 C -0.09 -1.92 4.82 -26.70 -0.13 -2.05 16 24 C -0.11 -2.49 5.24 -26.70 -0.14 -2.63 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.03 0.55 7.27 -51.93 -0.38 0.18 16 30 H 0.08 1.71 6.62 -51.93 -0.34 1.37 16 31 H 0.02 0.45 7.98 -51.93 -0.41 0.04 16 32 H 0.04 0.57 7.63 -51.93 -0.40 0.17 16 33 H 0.08 1.16 7.96 -51.93 -0.41 0.75 16 34 H 0.37 2.64 9.11 45.56 0.42 3.06 16 35 H 0.02 0.23 8.08 -51.93 -0.42 -0.19 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.34 3.25 7.97 -39.29 -0.31 2.93 16 38 H 0.34 2.57 9.08 -39.29 -0.36 2.21 16 39 H 0.04 0.58 7.92 -51.93 -0.41 0.17 16 40 H 0.09 1.33 7.65 -51.93 -0.40 0.93 16 41 H 0.08 1.93 7.22 -51.93 -0.37 1.55 16 42 H 0.03 0.59 6.91 -51.93 -0.36 0.23 16 43 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -29.22 328.07 -9.66 -38.88 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.90 Total: 6.39 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -1.61 Total: -17.47 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.61 Total: -42.45 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.46 Total: -6.74 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.22 -9.66 -38.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246582780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.800 kcal (2) G-P(sol) polarization free energy of solvation -29.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds