Wall clock time and date at job start Mon Mar 30 2020 01:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99862 * 2 1 4 4 H 1.48494 * 109.47310 * 270.00115 * 3 2 1 5 5 H 1.48506 * 109.47141 * 30.00292 * 3 2 1 6 6 H 1.48500 * 109.46989 * 150.00072 * 3 2 1 7 7 C 1.37871 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00206 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47016 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47107 * 299.99939 * 10 9 7 12 12 C 1.52998 * 109.47446 * 299.99994 * 11 10 9 13 13 N 1.46897 * 109.47378 * 180.02562 * 12 11 10 14 14 C 1.47904 * 110.99932 * 63.49539 * 13 12 11 15 15 C 1.53993 * 107.05749 * 145.84841 * 14 13 12 16 16 H 1.09005 * 110.30582 * 239.86166 * 15 14 13 17 17 O 1.42899 * 110.31202 * 117.78750 * 15 14 13 18 18 C 1.54598 * 105.22495 * 358.82251 * 15 14 13 19 19 H 1.08999 * 110.72627 * 96.35247 * 18 15 14 20 20 C 1.53001 * 110.72249 * 219.63779 * 18 15 14 21 21 N 1.46902 * 109.47057 * 293.54739 * 20 18 15 22 22 C 1.48534 * 110.99941 * 180.89372 * 13 12 11 23 23 C 1.52999 * 109.46963 * 59.99918 * 12 11 10 24 24 C 1.52999 * 109.46952 * 59.99945 * 9 7 2 25 25 H 0.97001 * 120.00324 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47142 * 300.00148 * 9 7 2 27 27 H 1.09004 * 109.47028 * 179.97438 * 10 9 7 28 28 H 1.09001 * 109.47082 * 60.00546 * 10 9 7 29 29 H 1.08999 * 109.46758 * 180.02562 * 11 10 9 30 30 H 1.08997 * 109.47065 * 60.00191 * 11 10 9 31 31 H 1.09004 * 109.46810 * 300.00321 * 12 11 10 32 32 H 1.09000 * 109.91696 * 26.49153 * 14 13 12 33 33 H 1.09004 * 110.08022 * 265.29029 * 14 13 12 34 34 H 0.96698 * 113.99812 * 62.78754 * 17 15 14 35 35 H 1.09001 * 109.47025 * 53.54751 * 20 18 15 36 36 H 1.09002 * 109.46982 * 173.54307 * 20 18 15 37 37 H 1.00894 * 110.99792 * 56.04484 * 21 20 18 38 38 H 1.00900 * 111.00044 * 180.02562 * 21 20 18 39 39 H 1.09000 * 110.66628 * 318.70735 * 22 13 12 40 40 H 1.08999 * 110.66584 * 81.67941 * 22 13 12 41 41 H 1.08997 * 109.47002 * 60.00137 * 23 12 11 42 42 H 1.08997 * 109.46997 * 180.02562 * 23 12 11 43 43 H 1.08999 * 109.46939 * 179.97438 * 24 9 7 44 44 H 1.08999 * 109.47413 * 300.00267 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 3.1249 -3.5810 -1.2498 12 6 2.2453 -3.6620 -2.4990 13 7 3.0899 -3.5848 -3.6984 14 6 4.0086 -4.7414 -3.7751 15 6 4.1814 -5.0829 -5.2667 16 1 3.8498 -6.1028 -5.4621 17 8 5.5465 -4.9225 -5.6574 18 6 3.2853 -4.0737 -6.0207 19 1 3.8702 -3.2208 -6.3652 20 6 2.5729 -4.7523 -7.1925 21 7 3.5627 -5.1542 -8.2008 22 6 2.2666 -3.6390 -4.9336 23 6 1.2511 -2.4991 -2.4990 24 6 0.3709 -2.5799 -1.2495 25 1 -0.4851 0.8400 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 1.7003 -4.6060 -0.0001 28 1 2.8719 -3.6043 0.8895 29 1 3.8329 -4.4097 -1.2499 30 1 3.6698 -2.6370 -1.2498 31 1 1.7003 -4.6060 -2.4990 32 1 3.5791 -5.5924 -3.2466 33 1 4.9736 -4.4824 -3.3393 34 1 6.1587 -5.5155 -5.2006 35 1 2.0416 -5.6336 -6.8334 36 1 1.8623 -4.0561 -7.6380 37 1 4.2701 -5.7490 -7.7961 38 1 3.1167 -5.6048 -8.9858 39 1 1.4715 -4.3778 -4.8338 40 1 1.8517 -2.6575 -5.1627 41 1 1.7960 -1.5552 -2.4990 42 1 0.6242 -2.5571 -3.3888 43 1 -0.1737 -3.5240 -1.2497 44 1 -0.3374 -1.7514 -1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246582780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:13 Heat of formation + Delta-G solvation = -84.752164 kcal Electronic energy + Delta-G solvation = -21939.148991 eV Core-core repulsion = 18889.177365 eV Total energy + Delta-G solvation = -3049.971626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.95429 -39.05179 -36.60948 -35.79023 -34.18451 -31.88040 -31.52383 -29.62697 -28.66611 -26.66172 -24.91943 -23.38151 -22.99041 -21.58141 -20.81061 -20.42024 -18.31451 -17.76556 -17.37203 -16.72479 -16.60212 -16.16610 -15.81681 -15.24598 -14.96965 -14.71878 -14.70467 -14.49190 -14.12608 -13.70811 -13.52539 -13.22452 -13.02852 -12.87386 -12.71939 -12.56878 -12.39813 -12.36580 -12.10580 -11.98016 -11.81620 -11.49839 -11.38907 -11.02186 -10.86792 -10.67714 -10.44466 -10.27878 -9.57668 -9.28241 -8.01864 -6.10721 1.40418 1.43038 1.50671 2.47004 2.95605 3.22282 3.26842 3.46763 3.64710 3.93029 4.02448 4.11954 4.13628 4.22406 4.38477 4.45994 4.48601 4.54891 4.67960 4.70770 4.76943 4.78840 4.84692 4.86620 4.96576 4.99546 5.04561 5.04729 5.18776 5.26479 5.40778 5.56261 5.64855 5.69219 5.75105 5.98283 6.01159 6.20214 6.25649 6.27284 6.48166 6.63779 6.94125 6.98281 7.54862 9.02977 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025257 B = 0.004844 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.333091 B = 5779.210114 C = 5933.237254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.016 3.984 3 Si 0.938 3.062 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.502 4.502 8 H 0.050 0.950 9 C 0.038 3.962 10 C -0.101 4.101 11 C -0.088 4.088 12 C 0.098 3.902 13 N -0.526 5.526 14 C 0.006 3.994 15 C 0.109 3.891 16 H 0.077 0.923 17 O -0.568 6.568 18 C -0.079 4.079 19 H 0.075 0.925 20 C 0.076 3.924 21 N -0.856 5.856 22 C 0.044 3.956 23 C -0.081 4.081 24 C -0.102 4.102 25 H 0.257 0.743 26 H -0.010 1.010 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.392 0.608 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.346 0.654 38 H 0.350 0.650 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.027 0.973 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.156 -14.355 -12.457 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.765 3.235 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.019 3.981 10 C -0.139 4.139 11 C -0.126 4.126 12 C -0.010 4.010 13 N -0.250 5.250 14 C -0.122 4.122 15 C 0.049 3.951 16 H 0.095 0.905 17 O -0.375 6.375 18 C -0.098 4.098 19 H 0.093 0.907 20 C -0.055 4.055 21 N -0.388 5.388 22 C -0.084 4.084 23 C -0.119 4.119 24 C -0.140 4.140 25 H 0.066 0.934 26 H 0.008 0.992 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.242 0.758 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.211 -12.519 -12.849 18.984 hybrid contribution -0.473 -0.717 0.994 1.314 sum 5.738 -13.235 -11.855 18.672 Atomic orbital electron populations 1.69998 1.06923 1.26558 1.52477 1.25560 0.95434 1.01638 0.95570 0.85861 0.78982 0.80744 0.77924 1.20730 1.21193 1.19503 1.21382 0.92592 0.91574 1.48516 0.93221 1.18694 0.93166 0.93074 0.93122 1.21459 0.97742 0.97635 0.97035 1.21325 0.97135 1.00975 0.93174 1.21654 0.92897 0.96655 0.89840 1.64680 1.17552 1.41045 1.01744 1.23675 0.98508 0.92385 0.97648 1.22636 0.82945 0.97952 0.91539 0.90523 1.86586 1.17011 1.65800 1.68101 1.22093 0.95211 0.98458 0.94076 0.90702 1.21666 0.93657 0.98618 0.91549 1.58568 1.16883 1.51693 1.11621 1.23224 0.95006 1.01188 0.89024 1.21245 0.96221 0.97912 0.96548 1.21376 0.98346 0.98609 0.95691 0.93427 0.99210 0.93067 0.93428 0.91988 0.93090 0.94422 0.92663 0.90113 0.75822 0.94322 0.90549 0.84017 0.83628 0.92784 0.90745 0.93757 0.93728 0.95442 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.53 11.32 21.45 0.24 -53.28 16 2 C 0.02 0.87 5.30 84.65 0.45 1.32 16 3 Si 0.94 44.81 29.54 68.60 2.03 46.83 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.50 -27.39 6.61 25.60 0.17 -27.23 16 8 H 0.05 2.71 6.71 -2.91 -0.02 2.69 16 9 C 0.04 1.88 2.58 -11.54 -0.03 1.85 16 10 C -0.10 -4.07 5.41 30.59 0.17 -3.90 16 11 C -0.09 -3.26 4.94 30.59 0.15 -3.11 16 12 C 0.10 3.42 1.64 44.92 0.07 3.50 16 13 N -0.53 -16.39 5.11 -857.31 -4.38 -20.77 16 14 C 0.01 0.15 5.30 86.45 0.46 0.61 16 15 C 0.11 2.19 3.16 31.47 0.10 2.29 16 16 H 0.08 1.21 7.80 -2.38 -0.02 1.19 16 17 O -0.57 -11.32 12.98 -148.98 -1.93 -13.25 16 18 C -0.08 -1.83 3.07 -9.50 -0.03 -1.86 16 19 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 20 C 0.08 1.39 6.18 86.30 0.53 1.93 16 21 N -0.86 -14.57 9.62 -186.71 -1.80 -16.36 16 22 C 0.04 1.18 4.83 86.74 0.42 1.60 16 23 C -0.08 -3.42 4.82 30.61 0.15 -3.27 16 24 C -0.10 -4.79 5.24 30.61 0.16 -4.63 16 25 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 26 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 27 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 1.93 7.27 -2.39 -0.02 1.91 16 30 H 0.05 2.18 6.62 -2.39 -0.02 2.16 16 31 H 0.04 1.25 7.98 -2.39 -0.02 1.23 16 32 H 0.06 1.23 7.63 -2.39 -0.02 1.21 16 33 H 0.08 2.01 7.96 -2.39 -0.02 1.99 16 34 H 0.39 4.32 9.11 -74.06 -0.67 3.65 16 35 H 0.04 0.61 8.08 -2.39 -0.02 0.59 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 37 H 0.35 5.54 7.97 -89.70 -0.71 4.83 16 38 H 0.35 4.42 9.08 -89.69 -0.81 3.61 16 39 H 0.05 1.33 7.92 -2.39 -0.02 1.32 16 40 H 0.07 2.19 7.65 -2.39 -0.02 2.17 16 41 H 0.04 2.17 7.22 -2.39 -0.02 2.15 16 42 H 0.04 1.71 6.91 -2.39 -0.02 1.69 16 43 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 44 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 Total: -1.00 -63.80 328.07 -4.28 -68.07 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -1.20 Total: 19.66 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: 2.77 Total: -30.90 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -5.93 Total: -90.41 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -1.93 Total: -13.25 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -63.80 -4.28 -68.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246582780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.679 kcal (2) G-P(sol) polarization free energy of solvation -63.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds