Wall clock time and date at job start Mon Mar 30 2020 01:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99698 * 2 1 4 4 H 1.48497 * 109.47457 * 270.00312 * 3 2 1 5 5 H 1.48499 * 109.47085 * 30.00372 * 3 2 1 6 6 H 1.48505 * 109.46806 * 150.00301 * 3 2 1 7 7 C 1.37879 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99918 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99714 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.46627 * 180.02562 * 9 7 2 11 11 C 1.46904 * 110.99528 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47109 * 204.99621 * 11 10 9 13 13 C 1.53003 * 109.47375 * 300.00521 * 12 11 10 14 14 C 1.53001 * 109.46922 * 299.99838 * 13 12 11 15 15 N 1.46898 * 109.46877 * 180.02562 * 14 13 12 16 16 C 1.47015 * 110.99642 * 298.63124 * 15 14 13 17 17 C 1.53098 * 109.25723 * 177.60943 * 16 15 14 18 18 O 1.43023 * 109.25952 * 56.85124 * 17 16 15 19 19 C 1.43014 * 113.73189 * 301.32868 * 18 17 16 20 20 C 1.47016 * 110.99994 * 175.00122 * 15 14 13 21 21 C 1.52992 * 109.47048 * 60.00092 * 14 13 12 22 22 C 1.53001 * 109.46952 * 85.00334 * 11 10 9 23 23 H 0.96995 * 120.00002 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47016 * 60.00463 * 9 7 2 25 25 H 1.08992 * 109.47237 * 300.00071 * 9 7 2 26 26 H 1.00900 * 111.00278 * 56.04756 * 10 9 7 27 27 H 1.08991 * 109.47399 * 324.99935 * 11 10 9 28 28 H 1.08996 * 109.47416 * 179.97438 * 12 11 10 29 29 H 1.09005 * 109.46661 * 60.00519 * 12 11 10 30 30 H 1.09003 * 109.46798 * 179.97438 * 13 12 11 31 31 H 1.09000 * 109.47123 * 59.99739 * 13 12 11 32 32 H 1.08996 * 109.46660 * 299.99929 * 14 13 12 33 33 H 1.08999 * 109.50673 * 297.54208 * 16 15 14 34 34 H 1.09004 * 109.50788 * 57.67624 * 16 15 14 35 35 H 1.08997 * 109.51060 * 296.91507 * 17 16 15 36 36 H 1.08998 * 109.54334 * 176.80599 * 17 16 15 37 37 H 1.08999 * 109.51224 * 298.73604 * 19 18 17 38 38 H 1.09005 * 109.53853 * 178.62625 * 19 18 17 39 39 H 1.09000 * 109.50136 * 302.32362 * 20 15 14 40 40 H 1.08995 * 109.50491 * 62.44945 * 20 15 14 41 41 H 1.08996 * 109.47524 * 60.00366 * 21 14 13 42 42 H 1.09006 * 109.47210 * 180.02562 * 21 14 13 43 43 H 1.09000 * 109.47157 * 179.97438 * 22 11 10 44 44 H 1.09003 * 109.47254 * 299.99905 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5117 -1.1940 -0.0011 10 7 4.0013 -2.5789 -0.0022 11 6 5.4698 -2.6180 -0.0022 12 6 5.9448 -3.9380 -0.6128 13 6 5.4035 -5.1064 0.2136 14 6 5.9165 -4.9954 1.6507 15 7 5.3972 -6.1175 2.4440 16 6 3.9281 -6.0923 2.4933 17 6 3.4284 -7.3087 3.2772 18 8 4.0141 -7.3022 4.5820 19 6 5.4439 -7.3269 4.5712 20 6 5.9642 -6.1106 3.8004 21 6 5.4415 -3.6755 2.2613 22 6 5.9829 -2.5072 1.4349 23 1 -0.4850 0.8400 0.0004 24 1 3.8753 -0.6804 0.8889 25 1 3.8746 -0.6799 -0.8910 26 1 3.6255 -3.0947 -0.7838 27 1 5.8555 -1.7858 -0.5909 28 1 7.0344 -3.9669 -0.6133 29 1 5.5793 -4.0170 -1.6367 30 1 5.7416 -6.0467 -0.2218 31 1 4.3139 -5.0773 0.2135 32 1 7.0061 -5.0245 1.6507 33 1 3.5961 -5.1793 2.9875 34 1 3.5293 -6.1238 1.4793 35 1 3.7144 -8.2214 2.7544 36 1 2.3428 -7.2648 3.3653 37 1 5.7887 -8.2400 4.0859 38 1 5.8168 -7.2957 5.5950 39 1 7.0516 -6.1555 3.7405 40 1 5.6647 -5.1979 4.3154 41 1 4.3519 -3.6465 2.2613 42 1 5.8074 -3.5962 3.2851 43 1 7.0725 -2.5367 1.4350 44 1 5.6445 -1.5668 1.8701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256676756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:04 Heat of formation + Delta-G solvation = -46.413770 kcal Electronic energy + Delta-G solvation = -21875.111053 eV Core-core repulsion = 18826.801905 eV Total energy + Delta-G solvation = -3048.309148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.12304 -38.31747 -35.73784 -33.41911 -31.89342 -31.25290 -30.49728 -29.13816 -26.72709 -25.43495 -24.10636 -22.63037 -21.69792 -21.14025 -20.00140 -18.48876 -16.77668 -16.69540 -16.12110 -15.26373 -15.14749 -15.08308 -14.81780 -14.41652 -14.26604 -13.95641 -13.76555 -13.12372 -12.73837 -12.46987 -12.28052 -12.07732 -11.86668 -11.76242 -11.73639 -11.45024 -11.36486 -10.89193 -10.75874 -10.62900 -10.39823 -10.34642 -9.95576 -9.85523 -9.74546 -9.61209 -9.25687 -8.61019 -8.19048 -7.45535 -6.07262 -4.04831 3.26522 3.34430 3.36948 3.75127 3.91849 4.40581 4.80155 4.90454 4.92002 5.05241 5.05341 5.13906 5.16758 5.25924 5.30878 5.35752 5.49426 5.51575 5.56947 5.62988 5.68392 5.73085 5.78892 5.82739 5.83084 6.02001 6.04467 6.09747 6.26089 6.36096 6.43242 6.50479 6.60034 6.76097 6.81043 7.01782 7.04586 7.09368 7.14429 7.62411 7.91408 8.35077 8.64476 9.00766 9.55263 11.06095 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.004867 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.504417 B = 5751.752243 C = 6330.335737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.514 4.514 8 H 0.078 0.922 9 C 0.165 3.835 10 N -0.670 5.670 11 C 0.080 3.920 12 C -0.116 4.116 13 C -0.104 4.104 14 C 0.091 3.909 15 N -0.531 5.531 16 C 0.011 3.989 17 C 0.064 3.936 18 O -0.388 6.388 19 C 0.065 3.935 20 C 0.014 3.986 21 C -0.142 4.142 22 C -0.099 4.099 23 H 0.263 0.737 24 H 0.025 0.975 25 H -0.023 1.023 26 H 0.334 0.666 27 H 0.033 0.967 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.089 0.911 42 H 0.047 0.953 43 H 0.050 0.950 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.036 -12.912 4.561 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.552 4.552 8 H 0.096 0.904 9 C 0.037 3.963 10 N -0.301 5.301 11 C -0.030 4.030 12 C -0.154 4.154 13 C -0.142 4.142 14 C -0.017 4.017 15 N -0.255 5.255 16 C -0.116 4.116 17 C -0.013 4.013 18 O -0.306 6.306 19 C -0.012 4.012 20 C -0.114 4.114 21 C -0.181 4.181 22 C -0.137 4.137 23 H 0.073 0.927 24 H 0.043 0.957 25 H -0.005 1.005 26 H 0.152 0.848 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.859 -13.308 5.193 19.903 hybrid contribution 0.537 2.179 -0.795 2.380 sum 14.395 -11.129 4.398 18.720 Atomic orbital electron populations 1.69899 1.06146 1.26841 1.51082 1.24903 0.94719 0.98903 0.94787 0.86835 0.80314 0.83990 0.78403 1.20399 1.21194 1.19265 1.21057 0.88997 0.94695 1.50445 0.90362 1.20030 0.96493 0.85285 0.94526 1.60512 1.04033 1.16431 1.49134 1.21494 0.90697 0.95505 0.95323 1.21676 1.00089 0.94925 0.98754 1.21476 1.02143 0.97178 0.93369 1.21688 0.98542 0.88030 0.93425 1.62528 1.06703 1.43787 1.12498 1.22860 0.88290 0.98480 1.02013 1.22709 0.98138 0.97239 0.83232 1.87977 1.19466 1.95022 1.28169 1.22619 0.81292 0.97031 1.00255 1.22769 1.00060 0.98578 0.90020 1.22058 1.03706 0.94751 0.97551 1.21398 0.98128 0.98603 0.95613 0.92682 0.95730 1.00535 0.84829 0.94897 0.92173 0.92026 0.92245 0.90355 0.90943 0.92736 0.88934 0.92686 0.88489 0.92651 0.88919 0.90170 0.93499 0.89260 0.93464 0.93118 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.51 -14.52 9.87 -34.44 -0.34 -14.86 16 8 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 9 C 0.16 3.93 4.31 -4.97 -0.02 3.91 16 10 N -0.67 -13.08 4.81 -107.99 -0.52 -13.60 16 11 C 0.08 1.29 2.82 -67.71 -0.19 1.10 16 12 C -0.12 -1.50 5.30 -26.73 -0.14 -1.65 16 13 C -0.10 -1.32 4.85 -26.73 -0.13 -1.45 16 14 C 0.09 1.15 2.23 -67.72 -0.15 1.00 16 15 N -0.53 -6.54 4.72 -226.34 -1.07 -7.61 16 16 C 0.01 0.15 4.86 -3.71 -0.02 0.13 16 17 C 0.06 0.75 7.01 37.21 0.26 1.01 16 18 O -0.39 -5.05 10.83 -35.23 -0.38 -5.43 16 19 C 0.07 0.68 7.01 37.21 0.26 0.94 16 20 C 0.01 0.16 5.31 -3.71 -0.02 0.14 16 21 C -0.14 -2.07 4.34 -26.73 -0.12 -2.18 16 22 C -0.10 -1.50 5.53 -26.73 -0.15 -1.65 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.02 0.61 6.49 -51.93 -0.34 0.28 16 25 H -0.02 -0.55 7.48 -51.93 -0.39 -0.94 16 26 H 0.33 6.40 8.18 -39.29 -0.32 6.08 16 27 H 0.03 0.56 7.80 -51.93 -0.41 0.15 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.12 5.72 -51.93 -0.30 0.83 16 32 H 0.07 0.88 8.12 -51.93 -0.42 0.45 16 33 H 0.05 0.82 6.42 -51.93 -0.33 0.49 16 34 H 0.09 1.21 6.22 -51.93 -0.32 0.89 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 40 H 0.05 0.58 6.56 -51.93 -0.34 0.24 16 41 H 0.09 1.56 5.90 -51.93 -0.31 1.26 16 42 H 0.05 0.66 6.58 -51.93 -0.34 0.32 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 1.04 7.45 -51.93 -0.39 0.65 16 LS Contribution 324.00 15.07 4.88 4.88 Total: -1.00 -30.19 324.00 -9.43 -39.62 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.60 Total: 3.66 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.85 Total: -11.67 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.81 Total: -48.09 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.38 Total: -5.43 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.19 -9.43 -39.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256676756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.794 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds