Wall clock time and date at job start Mon Mar 30 2020 00:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00158 * 2 1 4 4 H 1.48507 * 109.47360 * 240.00570 * 3 2 1 5 5 H 1.48501 * 109.47278 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47120 * 120.00186 * 3 2 1 7 7 C 1.37879 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00032 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99841 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47065 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47458 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47458 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47065 * 179.97438 * 12 11 10 14 14 O 1.20822 * 119.99988 * 0.02562 * 13 12 11 15 15 O 1.34231 * 119.99870 * 179.97438 * 13 12 11 16 16 C 1.45198 * 116.99983 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.46884 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 16 15 19 19 C 1.52992 * 109.47482 * 180.02562 * 18 17 16 20 20 C 1.53778 * 113.61727 * 274.13766 * 19 18 17 21 21 C 1.53956 * 87.02468 * 220.04570 * 20 19 18 22 22 C 1.53784 * 113.61658 * 176.52792 * 19 18 17 23 23 H 0.96999 * 119.99519 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47107 * 60.00744 * 9 7 2 25 25 H 1.08998 * 109.47403 * 300.00634 * 9 7 2 26 26 H 1.09001 * 109.47046 * 59.99818 * 10 9 7 27 27 H 1.09008 * 109.47307 * 300.00397 * 10 9 7 28 28 H 1.09001 * 109.47006 * 59.99418 * 11 10 9 29 29 H 1.08998 * 109.46873 * 300.00264 * 11 10 9 30 30 H 1.09005 * 109.46784 * 59.99853 * 12 11 10 31 31 H 1.08998 * 109.46854 * 300.00309 * 12 11 10 32 32 H 1.09001 * 109.46782 * 60.00304 * 16 15 13 33 33 H 1.08992 * 109.47385 * 300.00392 * 16 15 13 34 34 H 1.09002 * 109.47398 * 300.00338 * 17 16 15 35 35 H 1.09001 * 109.47194 * 60.00518 * 17 16 15 36 36 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 37 37 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 38 38 H 1.09000 * 112.84915 * 45.33452 * 19 18 17 39 39 H 1.08996 * 113.61184 * 334.56845 * 20 19 18 40 40 H 1.09000 * 113.61578 * 105.46835 * 20 19 18 41 41 H 1.09002 * 113.53647 * 270.81670 * 21 20 19 42 42 H 1.08996 * 113.66740 * 139.92974 * 21 20 19 43 43 H 1.08998 * 113.61407 * 254.52625 * 22 19 18 44 44 H 1.08996 * 113.61156 * 25.35491 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 6 1.7209 -7.4552 -0.0018 14 8 0.5127 -7.4551 -0.0018 15 8 2.3920 -8.6176 -0.0029 16 6 1.6012 -9.8353 -0.0034 17 6 2.5332 -11.0487 -0.0039 18 6 1.6999 -12.3318 -0.0051 19 6 2.6318 -13.5452 -0.0050 20 6 3.0887 -13.9712 -1.4101 21 6 2.9121 -15.4262 -0.9390 22 6 1.8916 -14.8905 0.0792 23 1 -0.4849 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8720 -3.6044 -0.8905 28 1 0.8538 -5.0446 -0.8914 29 1 0.8533 -5.0451 0.8885 30 1 3.1012 -6.0927 0.8882 31 1 3.1011 -6.0918 -0.8918 32 1 0.9721 -9.8596 -0.8932 33 1 0.9727 -9.8608 0.8867 34 1 3.1621 -11.0235 -0.8939 35 1 3.1620 -11.0243 0.8861 36 1 1.0708 -12.3573 0.8846 37 1 1.0714 -12.3562 -0.8953 38 1 3.4491 -13.4511 0.7101 39 1 2.3968 -13.6813 -2.2008 40 1 4.1223 -13.7058 -1.6324 41 1 3.8069 -15.8469 -0.4802 42 1 2.4744 -16.0803 -1.6931 43 1 1.9602 -15.3661 1.0576 44 1 0.8713 -14.8521 -0.3023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261589287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:01 Heat of formation + Delta-G solvation = -132.253414 kcal Electronic energy + Delta-G solvation = -19202.990082 eV Core-core repulsion = 16118.665897 eV Total energy + Delta-G solvation = -3084.324186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53977 -39.83948 -37.95569 -36.62811 -34.73972 -34.55124 -31.68856 -29.08538 -27.53804 -26.45725 -24.90822 -23.85479 -22.22095 -21.97077 -21.39669 -20.23097 -18.62819 -18.35506 -17.90372 -17.27029 -16.60429 -16.47478 -16.30476 -15.64696 -15.52506 -14.56943 -14.44876 -14.30776 -13.92307 -13.70883 -13.57804 -13.35282 -13.28554 -12.97272 -12.79971 -12.66318 -12.38580 -12.20304 -12.18272 -12.16369 -11.96714 -11.64480 -11.49289 -11.39258 -11.36770 -11.29907 -11.09600 -10.97920 -10.89246 -10.53252 -8.17866 -6.29809 1.17880 1.41430 1.45194 1.52984 1.66205 2.42928 3.14953 3.54836 3.72594 3.78771 3.84315 3.93039 4.00282 4.04667 4.07166 4.09535 4.27497 4.43741 4.53211 4.64321 4.67659 4.69460 4.77482 4.78772 4.86437 4.90522 4.93665 4.97340 5.09041 5.10472 5.14745 5.21561 5.24954 5.32407 5.33704 5.45592 5.48215 5.57303 5.67018 5.78272 5.88735 6.26098 6.73915 6.88411 7.39709 8.93977 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.080335 B = 0.001964 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.456664 B =14256.490632 C =14453.844465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.101 4.101 12 C -0.103 4.103 13 C 0.463 3.537 14 O -0.546 6.546 15 O -0.358 6.358 16 C 0.058 3.942 17 C -0.107 4.107 18 C -0.104 4.104 19 C -0.109 4.109 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.140 4.140 23 H 0.262 0.738 24 H -0.013 1.013 25 H -0.013 1.013 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.744 -30.274 -0.557 31.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.134 4.134 11 C -0.138 4.138 12 C -0.140 4.140 13 C 0.309 3.691 14 O -0.436 6.436 15 O -0.275 6.275 16 C -0.016 4.016 17 C -0.145 4.145 18 C -0.142 4.142 19 C -0.128 4.128 20 C -0.179 4.179 21 C -0.181 4.181 22 C -0.177 4.177 23 H 0.071 0.929 24 H 0.005 0.995 25 H 0.005 0.995 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.239 -30.219 -0.558 31.327 hybrid contribution -0.494 0.997 -0.006 1.113 sum 7.744 -29.222 -0.564 30.236 Atomic orbital electron populations 1.70125 1.08007 1.27773 1.51799 1.26077 0.95786 1.03677 0.94790 0.85443 0.78167 0.77771 0.79302 1.18970 1.21108 1.18976 1.21737 0.93794 0.92251 1.50371 0.91547 1.19064 0.94706 0.93663 0.94517 1.21443 0.97893 0.92352 1.01680 1.21355 0.97464 0.93307 1.01723 1.21499 0.98830 0.85619 1.08042 1.24345 0.87020 0.86856 0.70923 1.90662 1.17441 1.88474 1.47026 1.86499 1.42049 1.15203 1.83746 1.23298 0.94482 0.81514 1.02266 1.21524 0.98014 0.90829 1.04116 1.21469 0.97718 0.92345 1.02647 1.22546 0.98554 0.93513 0.98144 1.23050 1.01700 0.96506 0.96655 1.22861 0.99695 0.96492 0.99095 1.22964 0.98710 0.96161 0.99873 0.92887 0.99502 0.99502 0.91798 0.91811 0.93195 0.93184 0.85249 0.85253 0.91750 0.91684 0.90437 0.90304 0.91339 0.91481 0.88824 0.90218 0.91409 0.89844 0.91351 0.91262 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.63 13.29 21.45 0.28 -58.34 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.54 -31.34 9.11 25.60 0.23 -31.10 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.02 0.96 4.97 29.85 0.15 1.10 16 10 C -0.10 -3.84 5.15 30.59 0.16 -3.69 16 11 C -0.10 -3.51 4.50 30.59 0.14 -3.38 16 12 C -0.10 -2.58 5.81 29.85 0.17 -2.41 16 13 C 0.46 13.16 7.96 71.24 0.57 13.72 16 14 O -0.55 -19.59 15.73 21.98 0.35 -19.24 16 15 O -0.36 -8.58 10.22 -51.42 -0.53 -9.10 16 16 C 0.06 1.15 5.47 71.98 0.39 1.55 16 17 C -0.11 -1.48 5.59 30.59 0.17 -1.31 16 18 C -0.10 -1.20 5.04 30.59 0.15 -1.04 16 19 C -0.11 -1.12 3.64 -10.27 -0.04 -1.15 16 20 C -0.14 -1.44 7.65 31.18 0.24 -1.20 16 21 C -0.14 -1.33 8.09 31.18 0.25 -1.08 16 22 C -0.14 -1.35 7.65 31.12 0.24 -1.11 16 23 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 24 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 25 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 28 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 29 H 0.05 1.88 8.10 -2.39 -0.02 1.87 16 30 H 0.13 2.63 8.14 -2.38 -0.02 2.61 16 31 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 33 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.78 7.88 -2.39 -0.02 0.76 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 0.83 7.92 -2.39 -0.02 0.81 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.08 0.78 8.10 -2.39 -0.02 0.76 16 Total: -1.00 -69.99 362.57 6.34 -63.65 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.92 Total: 7.34 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 3.29 Total: -30.98 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.28 Total: -58.34 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.18 Total: -28.34 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -69.99 6.34 -63.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261589287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.607 kcal (2) G-P(sol) polarization free energy of solvation -69.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds