Wall clock time and date at job start Mon Mar 30 2020 00:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46922 * 2 1 4 4 C 1.50694 * 109.47164 * 240.00068 * 2 1 3 5 5 H 1.07997 * 120.00560 * 239.99900 * 4 2 1 6 6 C 1.37875 * 120.00141 * 59.99852 * 4 2 1 7 7 N 1.31519 * 120.00151 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00214 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47122 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47275 * 120.00058 * 8 6 4 11 11 H 1.48506 * 109.47329 * 239.99811 * 8 6 4 12 12 N 1.46897 * 109.47131 * 119.99796 * 2 1 3 13 13 C 1.46899 * 110.99962 * 58.95751 * 12 2 1 14 14 C 1.38584 * 111.00244 * 295.00397 * 12 2 1 15 15 N 1.31220 * 126.47200 * 359.97269 * 14 12 2 16 16 N 1.28525 * 109.85972 * 180.02562 * 15 14 12 17 17 C 1.30300 * 110.05301 * 0.02562 * 16 15 14 18 18 C 1.50701 * 126.34515 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.47212 * 90.02281 * 18 17 16 20 20 H 1.09004 * 109.47346 * 305.00026 * 19 18 17 21 21 C 1.52997 * 109.47504 * 184.99949 * 19 18 17 22 22 O 1.42904 * 109.47396 * 64.99575 * 19 18 17 23 23 N 1.36452 * 126.47533 * 180.29084 * 14 12 2 24 24 C 1.46499 * 127.13727 * 359.97438 * 23 14 12 25 25 H 1.09008 * 109.47671 * 299.99962 * 1 2 3 26 26 H 1.09006 * 109.47542 * 60.00333 * 1 2 3 27 27 H 1.09000 * 109.46922 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00461 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.46904 * 296.04531 * 13 12 2 30 30 H 1.09005 * 109.47387 * 56.04436 * 13 12 2 31 31 H 1.08999 * 109.47373 * 176.04237 * 13 12 2 32 32 H 1.09002 * 109.47060 * 210.02337 * 18 17 16 33 33 H 1.09001 * 109.47380 * 330.02424 * 18 17 16 34 34 H 1.09004 * 109.46881 * 300.00361 * 21 19 18 35 35 H 1.09002 * 109.47016 * 59.99741 * 21 19 18 36 36 H 1.09000 * 109.47400 * 180.02562 * 21 19 18 37 37 H 0.96691 * 114.00252 * 179.97438 * 22 19 18 38 38 H 1.09000 * 109.47314 * 270.20484 * 24 23 14 39 39 H 1.09008 * 109.46865 * 30.19929 * 24 23 14 40 40 H 1.09004 * 109.47399 * 150.20080 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1484 -2.2855 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 7 2.0196 -0.6924 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6696 -0.0023 2.3491 15 7 0.9940 1.1210 2.4093 16 7 0.8500 1.4788 3.6353 17 6 1.4211 0.6125 4.4235 18 6 1.4741 0.6732 5.9284 19 6 0.2597 -0.0523 6.5112 20 1 -0.6527 0.3710 6.0910 21 6 0.2465 0.1157 8.0319 22 8 0.3336 -1.4419 6.1861 23 7 1.9677 -0.3592 3.6319 24 6 2.7158 -1.5400 4.0703 25 1 -0.3635 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7080 1.1608 -3.4843 29 1 0.4420 -2.0730 1.3347 30 1 1.8168 -2.5950 0.3318 31 1 1.9618 -2.5868 2.1058 32 1 2.3874 0.1928 6.2795 33 1 1.4643 1.7145 6.2506 34 1 1.1589 -0.3076 8.4521 35 1 0.1900 1.1756 8.2798 36 1 -0.6184 -0.4016 8.4471 37 1 -0.4056 -1.9650 6.5249 38 1 2.0259 -2.3685 4.2303 39 1 3.4421 -1.8146 3.3053 40 1 3.2361 -1.3154 5.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262886837.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:51 Heat of formation + Delta-G solvation = 43.811907 kcal Electronic energy + Delta-G solvation = -21517.549421 eV Core-core repulsion = 18369.612408 eV Total energy + Delta-G solvation = -3147.937013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.35866 -37.89280 -37.17802 -34.52068 -33.03697 -32.39933 -29.87067 -28.65761 -27.62514 -26.69722 -25.13856 -24.83037 -22.04109 -21.58937 -20.14466 -19.35615 -17.55775 -16.58315 -16.03183 -15.98302 -15.39783 -15.00065 -14.72760 -14.48591 -13.93826 -13.36176 -13.25218 -12.96460 -12.85825 -12.69707 -12.34156 -12.24156 -12.17103 -11.45277 -11.35180 -11.19359 -10.96868 -10.89996 -10.71006 -10.48868 -10.21668 -10.11223 -10.03890 -9.66017 -9.56741 -8.89188 -8.83264 -8.37754 -7.24961 -6.00673 -4.07749 2.36707 2.85883 3.30035 3.37720 3.40912 3.49672 4.00795 4.37503 4.46889 4.72159 4.72936 4.92967 4.94979 5.05756 5.18729 5.30812 5.35134 5.48434 5.55611 5.63052 5.66761 5.75844 5.85939 5.99070 6.08970 6.30734 6.46972 6.56938 6.87837 7.08471 7.15920 7.25945 7.44004 7.55833 7.70750 7.79552 8.02467 8.31735 8.50420 8.94357 9.48520 9.57003 11.05807 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.042071 B = 0.004570 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.387427 B = 6125.450888 C = 6407.587679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.228 3.772 3 H 0.055 0.945 4 C -0.513 4.513 5 H 0.064 0.936 6 C 0.063 3.937 7 N -0.884 5.884 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.451 5.451 13 C 0.031 3.969 14 C 0.383 3.617 15 N -0.318 5.318 16 N -0.291 5.291 17 C 0.151 3.849 18 C -0.015 4.015 19 C 0.105 3.895 20 H 0.063 0.937 21 C -0.183 4.183 22 O -0.565 6.565 23 N -0.482 5.482 24 C 0.089 3.911 25 H 0.037 0.963 26 H 0.090 0.910 27 H 0.021 0.979 28 H 0.262 0.738 29 H 0.033 0.967 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.376 0.624 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.259 -5.931 19.244 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.124 3.876 3 H 0.073 0.927 4 C -0.552 4.552 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.522 5.522 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.174 5.174 13 C -0.116 4.116 14 C 0.027 3.973 15 N -0.163 5.163 16 N -0.131 5.131 17 C -0.117 4.117 18 C -0.055 4.055 19 C 0.045 3.955 20 H 0.081 0.919 21 C -0.241 4.241 22 O -0.371 6.371 23 N -0.178 5.178 24 C -0.054 4.054 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.223 0.777 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.510 -4.432 18.274 18.811 hybrid contribution -0.175 -1.774 -0.161 1.790 sum 0.335 -6.206 18.113 19.149 Atomic orbital electron populations 1.22396 0.99131 0.98904 1.02572 1.19371 0.91237 0.94788 0.82238 0.92738 1.21077 1.31663 1.12939 0.89533 0.91784 1.24899 0.95049 0.95063 0.98928 1.69935 1.36178 1.22608 1.23480 0.86427 0.78516 0.79553 0.82787 1.19764 1.21067 1.20967 1.59292 1.55681 1.03054 0.99414 1.22436 0.98256 0.88135 1.02796 1.23284 0.95254 0.94726 0.84043 1.74811 1.18186 1.12488 1.10804 1.73911 1.19106 1.23138 0.96906 1.24115 1.02579 0.89546 0.95463 1.19915 0.98462 1.02046 0.85078 1.21799 0.98175 0.82130 0.93392 0.91928 1.22496 1.02586 1.02957 0.96061 1.86524 1.50860 1.19397 1.80336 1.45919 1.44322 1.21544 1.06025 1.21913 0.96307 0.86045 1.01176 0.94411 0.89122 0.96039 0.92841 0.94819 0.88749 0.93237 0.89902 0.87439 0.91759 0.91221 0.92189 0.77670 0.90474 0.89474 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.47 8.26 37.16 0.31 -4.17 16 2 C 0.23 6.04 2.03 -68.87 -0.14 5.90 16 3 H 0.05 1.65 7.95 -51.93 -0.41 1.24 16 4 C -0.51 -14.04 7.88 -34.44 -0.27 -14.31 16 5 H 0.06 1.70 6.77 -52.49 -0.36 1.35 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -25.63 11.32 55.43 0.63 -25.00 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.45 -10.24 4.80 -176.09 -0.85 -11.08 16 13 C 0.03 0.60 8.60 60.06 0.52 1.12 16 14 C 0.38 8.41 6.75 -318.87 -2.15 6.26 16 15 N -0.32 -7.68 9.32 30.32 0.28 -7.40 16 16 N -0.29 -6.20 12.18 32.99 0.40 -5.80 16 17 C 0.15 2.58 7.09 -154.02 -1.09 1.48 16 18 C -0.02 -0.17 5.30 -27.88 -0.15 -0.32 16 19 C 0.10 1.01 3.57 -26.73 -0.10 0.92 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 21 C -0.18 -1.21 9.53 37.16 0.35 -0.85 16 22 O -0.57 -5.62 12.91 -35.23 -0.45 -6.08 16 23 N -0.48 -8.46 3.21 -121.45 -0.39 -8.85 16 24 C 0.09 1.14 9.17 59.85 0.55 1.69 16 25 H 0.04 0.98 5.88 -51.92 -0.31 0.68 16 26 H 0.09 2.58 6.07 -51.93 -0.32 2.27 16 27 H 0.02 0.52 6.47 -51.93 -0.34 0.19 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.03 0.67 6.51 -51.93 -0.34 0.33 16 30 H 0.09 1.86 6.42 -51.93 -0.33 1.52 16 31 H 0.05 0.78 5.43 -51.93 -0.28 0.49 16 32 H 0.08 0.81 7.26 -51.93 -0.38 0.43 16 33 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.38 2.31 9.08 45.56 0.41 2.72 16 38 H 0.08 0.91 7.84 -51.93 -0.41 0.51 16 39 H 0.09 1.11 7.60 -51.92 -0.39 0.72 16 40 H 0.08 0.81 7.24 -51.93 -0.38 0.44 16 LS Contribution 317.63 15.07 4.79 4.79 Total: -1.00 -33.84 317.63 -7.95 -41.78 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.07 Total: 2.11 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.27 Total: -0.63 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.08 Total: -58.13 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.45 Total: -6.08 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.84 -7.95 -41.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262886837.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.595 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds