Wall clock time and date at job start Mon Mar 30 2020 00:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46922 * 2 1 4 4 C 1.50694 * 109.47164 * 240.00068 * 2 1 3 5 5 H 1.07997 * 120.00560 * 239.99900 * 4 2 1 6 6 C 1.37875 * 120.00141 * 59.99852 * 4 2 1 7 7 N 1.31519 * 120.00151 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00214 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47122 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47275 * 120.00058 * 8 6 4 11 11 H 1.48506 * 109.47329 * 239.99811 * 8 6 4 12 12 N 1.46897 * 109.47131 * 119.99796 * 2 1 3 13 13 C 1.46899 * 110.99962 * 58.95751 * 12 2 1 14 14 C 1.38584 * 111.00244 * 295.00397 * 12 2 1 15 15 N 1.31220 * 126.47200 * 359.97269 * 14 12 2 16 16 N 1.28525 * 109.85972 * 180.02562 * 15 14 12 17 17 C 1.30300 * 110.05301 * 0.02562 * 16 15 14 18 18 C 1.50701 * 126.34515 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.47212 * 90.02281 * 18 17 16 20 20 H 1.09004 * 109.47346 * 305.00026 * 19 18 17 21 21 C 1.52997 * 109.47504 * 184.99949 * 19 18 17 22 22 O 1.42904 * 109.47396 * 64.99575 * 19 18 17 23 23 N 1.36452 * 126.47533 * 180.29084 * 14 12 2 24 24 C 1.46499 * 127.13727 * 359.97438 * 23 14 12 25 25 H 1.09008 * 109.47671 * 299.99962 * 1 2 3 26 26 H 1.09006 * 109.47542 * 60.00333 * 1 2 3 27 27 H 1.09000 * 109.46922 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00461 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.46904 * 296.04531 * 13 12 2 30 30 H 1.09005 * 109.47387 * 56.04436 * 13 12 2 31 31 H 1.08999 * 109.47373 * 176.04237 * 13 12 2 32 32 H 1.09002 * 109.47060 * 210.02337 * 18 17 16 33 33 H 1.09001 * 109.47380 * 330.02424 * 18 17 16 34 34 H 1.09004 * 109.46881 * 300.00361 * 21 19 18 35 35 H 1.09002 * 109.47016 * 59.99741 * 21 19 18 36 36 H 1.09000 * 109.47400 * 180.02562 * 21 19 18 37 37 H 0.96691 * 114.00252 * 179.97438 * 22 19 18 38 38 H 1.09000 * 109.47314 * 270.20484 * 24 23 14 39 39 H 1.09008 * 109.46865 * 30.19929 * 24 23 14 40 40 H 1.09004 * 109.47399 * 150.20080 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1484 -2.2855 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 7 2.0196 -0.6924 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6696 -0.0023 2.3491 15 7 0.9940 1.1210 2.4093 16 7 0.8500 1.4788 3.6353 17 6 1.4211 0.6125 4.4235 18 6 1.4741 0.6732 5.9284 19 6 0.2597 -0.0523 6.5112 20 1 -0.6527 0.3710 6.0910 21 6 0.2465 0.1157 8.0319 22 8 0.3336 -1.4419 6.1861 23 7 1.9677 -0.3592 3.6319 24 6 2.7158 -1.5400 4.0703 25 1 -0.3635 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7080 1.1608 -3.4843 29 1 0.4420 -2.0730 1.3347 30 1 1.8168 -2.5950 0.3318 31 1 1.9618 -2.5868 2.1058 32 1 2.3874 0.1928 6.2795 33 1 1.4643 1.7145 6.2506 34 1 1.1589 -0.3076 8.4521 35 1 0.1900 1.1756 8.2798 36 1 -0.6184 -0.4016 8.4471 37 1 -0.4056 -1.9650 6.5249 38 1 2.0259 -2.3685 4.2303 39 1 3.4421 -1.8146 3.3053 40 1 3.2361 -1.3154 5.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262886837.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:51 Heat of formation + Delta-G solvation = 19.774667 kcal Electronic energy + Delta-G solvation = -21518.591754 eV Core-core repulsion = 18369.612408 eV Total energy + Delta-G solvation = -3148.979346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.87245 -39.16809 -38.46424 -35.94068 -34.82143 -33.56273 -31.15365 -30.51066 -28.86706 -27.85142 -27.23552 -26.41607 -23.48498 -22.83560 -21.41168 -21.09206 -18.38538 -18.28897 -17.70617 -17.38914 -17.12109 -16.40559 -16.09164 -15.59466 -15.41038 -14.95257 -14.49528 -14.31082 -14.20109 -13.70397 -13.50086 -13.34614 -13.12681 -13.09087 -12.92480 -12.75814 -12.68634 -12.45085 -12.28267 -12.09479 -11.97822 -11.92830 -11.32168 -11.02901 -10.90601 -10.85648 -10.54010 -10.49315 -8.96114 -8.12095 -6.27515 0.92827 1.43405 1.45180 1.49390 1.58983 1.93955 2.42812 3.05913 3.17716 3.27899 3.49583 3.83505 3.99002 4.08426 4.13152 4.28681 4.33433 4.42116 4.49011 4.58006 4.62829 4.72064 4.80468 4.87120 4.98315 5.02065 5.03417 5.09457 5.16718 5.17647 5.35468 5.48127 5.60401 5.64108 5.89332 6.10177 6.21181 6.61085 6.82172 6.88809 7.41412 7.93676 8.95096 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.042071 B = 0.004570 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.387427 B = 6125.450888 C = 6407.587679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.240 3.760 3 H 0.003 0.997 4 C -0.525 4.525 5 H 0.072 0.928 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.259 1.259 10 H -0.280 1.280 11 H -0.284 1.284 12 N -0.455 5.455 13 C 0.035 3.965 14 C 0.360 3.640 15 N -0.369 5.369 16 N -0.338 5.338 17 C 0.179 3.821 18 C -0.019 4.019 19 C 0.110 3.890 20 H 0.041 0.959 21 C -0.172 4.172 22 O -0.580 6.580 23 N -0.475 5.475 24 C 0.080 3.920 25 H 0.031 0.969 26 H 0.063 0.937 27 H 0.029 0.971 28 H 0.263 0.737 29 H 0.022 0.978 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.393 0.607 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -8.176 21.362 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.134 3.866 3 H 0.021 0.979 4 C -0.563 4.563 5 H 0.090 0.910 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.183 1.183 10 H -0.206 1.206 11 H -0.210 1.210 12 N -0.178 5.178 13 C -0.112 4.112 14 C 0.003 3.997 15 N -0.214 5.214 16 N -0.177 5.177 17 C -0.091 4.091 18 C -0.058 4.058 19 C 0.050 3.950 20 H 0.059 0.941 21 C -0.230 4.230 22 O -0.389 6.389 23 N -0.170 5.170 24 C -0.061 4.061 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.242 0.758 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.615 -6.708 20.438 21.571 hybrid contribution -0.524 -1.072 -0.645 1.356 sum 1.090 -7.780 19.793 21.295 Atomic orbital electron populations 1.22157 0.99377 0.98732 1.00798 1.18933 0.90820 0.92630 0.84221 0.97875 1.21357 1.31736 1.13140 0.90050 0.90963 1.25818 0.95072 0.95682 1.02243 1.70097 1.37349 1.24183 1.24235 0.85302 0.78027 0.78575 0.78456 1.18265 1.20576 1.20965 1.59172 1.55942 1.04051 0.98618 1.22499 0.97740 0.86555 1.04380 1.23168 0.96403 0.94822 0.85344 1.74655 1.19895 1.14013 1.12793 1.73811 1.21885 1.25406 0.96565 1.25220 0.98895 0.87513 0.97447 1.20324 1.00704 1.03877 0.80883 1.21681 0.96105 0.81898 0.95316 0.94117 1.22390 1.03677 1.03735 0.93191 1.86461 1.52002 1.19466 1.80934 1.46156 1.43953 1.22661 1.04277 1.22294 0.96469 0.84724 1.02634 0.95058 0.91870 0.95172 0.92813 0.95950 0.89177 0.89247 0.87187 0.85966 0.90790 0.90567 0.90950 0.75754 0.88920 0.89329 0.86897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.29 8.26 71.98 0.59 -7.69 16 2 C 0.24 13.22 2.03 44.17 0.09 13.31 16 3 H 0.00 0.21 7.95 -2.39 -0.02 0.19 16 4 C -0.52 -29.11 7.88 25.60 0.20 -28.91 16 5 H 0.07 3.81 6.77 -2.91 -0.02 3.79 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -55.07 11.32 21.45 0.24 -54.83 16 8 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 9 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 N -0.45 -20.89 4.80 -711.01 -3.42 -24.31 16 13 C 0.03 1.32 8.60 127.69 1.10 2.41 16 14 C 0.36 16.05 6.75 260.11 1.76 17.81 16 15 N -0.37 -18.58 9.32 -58.00 -0.54 -19.12 16 16 N -0.34 -14.74 12.18 -49.54 -0.60 -15.34 16 17 C 0.18 5.90 7.09 137.64 0.98 6.88 16 18 C -0.02 -0.37 5.30 29.85 0.16 -0.21 16 19 C 0.11 1.83 3.57 30.59 0.11 1.94 16 20 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 21 C -0.17 -1.64 9.53 71.98 0.69 -0.96 16 22 O -0.58 -9.68 12.91 -148.98 -1.92 -11.60 16 23 N -0.48 -16.01 3.21 -538.17 -1.73 -17.74 16 24 C 0.08 1.77 9.17 127.77 1.17 2.94 16 25 H 0.03 1.71 5.88 -2.38 -0.01 1.70 16 26 H 0.06 3.79 6.07 -2.38 -0.01 3.77 16 27 H 0.03 1.53 6.47 -2.39 -0.02 1.51 16 28 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.02 0.87 6.51 -2.39 -0.02 0.86 16 30 H 0.09 3.45 6.42 -2.38 -0.02 3.43 16 31 H 0.09 2.59 5.43 -2.39 -0.01 2.58 16 32 H 0.11 1.64 7.26 -2.39 -0.02 1.62 16 33 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 37 H 0.39 3.63 9.08 -74.06 -0.67 2.96 16 38 H 0.09 1.82 7.84 -2.39 -0.02 1.80 16 39 H 0.09 1.99 7.60 -2.38 -0.02 1.97 16 40 H 0.11 1.78 7.24 -2.38 -0.02 1.76 16 Total: -1.00 -77.52 317.63 1.73 -75.78 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.38 Total: 12.94 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 7.29 Total: 8.59 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -6.04 Total: -131.34 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -1.92 Total: -11.60 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -77.52 1.73 -75.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262886837.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.559 kcal (2) G-P(sol) polarization free energy of solvation -77.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds