Wall clock time and date at job start Mon Mar 30 2020 00:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47095 * 2 1 4 4 C 1.36744 * 127.13459 * 84.20031 * 3 2 1 5 5 C 1.50698 * 126.34640 * 0.02562 * 4 3 2 6 6 H 1.08995 * 109.47346 * 14.99669 * 5 4 3 7 7 C 1.53006 * 109.47052 * 254.99468 * 5 4 3 8 8 O 1.42897 * 109.47004 * 134.99950 * 5 4 3 9 9 N 1.30291 * 107.30346 * 180.26046 * 4 3 2 10 10 N 1.28529 * 110.05346 * 359.56831 * 9 4 3 11 11 C 1.31221 * 109.86275 * 0.44332 * 10 9 4 12 12 N 1.38576 * 126.47697 * 179.73434 * 11 10 9 13 13 C 1.46896 * 110.99919 * 245.53712 * 12 11 10 14 14 C 1.46901 * 110.99747 * 9.48862 * 12 11 10 15 15 H 1.09001 * 109.47295 * 55.00474 * 14 12 11 16 16 C 1.52993 * 109.47219 * 294.99980 * 14 12 11 17 17 C 1.50703 * 109.47129 * 174.99704 * 14 12 11 18 18 H 1.07997 * 119.99732 * 115.56690 * 17 14 12 19 19 C 1.37870 * 120.00299 * 295.57518 * 17 14 12 20 20 N 1.31512 * 120.00035 * 177.05646 * 19 17 14 21 21 Si 1.86807 * 119.99877 * 357.05531 * 19 17 14 22 22 H 1.48498 * 109.47125 * 88.83723 * 21 19 17 23 23 H 1.48502 * 109.46947 * 208.83644 * 21 19 17 24 24 H 1.48494 * 109.47161 * 328.83794 * 21 19 17 25 25 H 1.09000 * 109.47315 * 293.34248 * 1 2 3 26 26 H 1.09003 * 109.47174 * 53.34324 * 1 2 3 27 27 H 1.08999 * 109.46948 * 173.33931 * 1 2 3 28 28 H 1.08993 * 109.47261 * 239.99899 * 2 1 3 29 29 H 1.09007 * 109.47040 * 119.99974 * 2 1 3 30 30 H 1.08998 * 109.46761 * 180.02562 * 7 5 4 31 31 H 1.08995 * 109.47210 * 300.00285 * 7 5 4 32 32 H 1.09004 * 109.46591 * 60.00017 * 7 5 4 33 33 H 0.96702 * 114.00140 * 179.97438 * 8 5 4 34 34 H 1.09003 * 109.47121 * 53.51198 * 13 12 11 35 35 H 1.09002 * 109.47059 * 173.51281 * 13 12 11 36 36 H 1.09000 * 109.47222 * 293.50993 * 13 12 11 37 37 H 1.09001 * 109.46926 * 187.21531 * 16 14 12 38 38 H 1.09001 * 109.47546 * 307.21411 * 16 14 12 39 39 H 1.09004 * 109.47054 * 67.22059 * 16 14 12 40 40 H 0.97009 * 119.99601 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1897 2.1962 1.0846 5 6 1.9097 1.8407 2.5220 6 1 1.8016 0.7601 2.6146 7 6 0.6169 2.5233 2.9737 8 8 2.9933 2.2831 3.3418 9 7 2.6350 3.3388 0.6443 10 7 2.7643 3.2984 -0.6339 11 6 2.3965 2.1213 -1.0822 12 7 2.3928 1.7078 -2.4049 13 6 1.0236 1.4564 -2.8740 14 6 3.0723 2.6865 -3.2642 15 1 4.0775 2.8681 -2.8837 16 6 2.2835 3.9974 -3.2669 17 6 3.1569 2.1481 -4.6693 18 1 2.6344 2.6480 -5.4714 19 6 3.9011 1.0174 -4.9306 20 7 3.9282 0.5142 -6.1454 21 14 4.8711 0.2000 -3.5593 22 1 4.0117 -0.7965 -2.8711 23 1 6.0591 -0.4825 -4.1321 24 1 5.3136 1.2292 -2.5845 25 1 -0.3634 0.4072 0.9435 26 1 -0.3634 0.6135 -0.8244 27 1 -0.3633 -1.0207 -0.1192 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 0.4147 2.2665 4.0135 31 1 0.7251 3.6039 2.8811 32 1 -0.2096 2.1859 2.3483 33 1 2.8805 2.0875 4.2821 34 1 0.4078 2.3360 -2.6858 35 1 1.0389 1.2456 -3.9433 36 1 0.6082 0.6012 -2.3409 37 1 2.7138 4.6788 -4.0008 38 1 1.2438 3.7953 -3.5246 39 1 2.3309 4.4520 -2.2774 40 1 4.4522 -0.2812 -6.3293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263043275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:56 Heat of formation + Delta-G solvation = 23.980330 kcal Electronic energy + Delta-G solvation = -22135.581482 eV Core-core repulsion = 18986.784508 eV Total energy + Delta-G solvation = -3148.796974 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.02310 -39.32502 -38.26414 -36.76944 -34.64233 -32.70933 -31.80779 -31.28900 -30.00802 -27.52644 -26.91640 -25.19642 -24.76814 -23.03719 -21.25141 -21.06435 -18.93910 -18.34165 -18.17367 -17.42360 -16.88831 -16.50255 -16.18331 -15.79185 -15.34424 -15.12292 -15.09727 -14.62975 -14.30155 -13.83540 -13.73213 -13.47358 -13.26212 -13.01186 -12.80230 -12.75695 -12.68424 -12.41974 -12.28108 -12.14253 -11.94315 -11.79454 -11.41420 -11.32795 -11.12898 -11.02077 -10.82364 -10.55216 -9.11863 -8.35061 -6.44258 0.75555 1.20804 1.35048 1.36772 1.51311 1.83514 2.36061 2.76006 3.11780 3.24649 3.48414 3.67376 3.86526 3.96879 4.02515 4.07390 4.27481 4.29880 4.43425 4.45678 4.54770 4.64357 4.72011 4.76643 4.79538 4.83228 4.98267 5.03628 5.09111 5.16572 5.26198 5.29819 5.33828 5.54613 5.73778 5.85919 6.23745 6.46858 6.68395 6.90194 7.29359 7.81899 8.77818 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024953 B = 0.006651 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.838983 B = 4208.923104 C = 4303.157501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.088 3.912 3 N -0.474 5.474 4 C 0.166 3.834 5 C 0.203 3.797 6 H 0.105 0.895 7 C -0.169 4.169 8 O -0.575 6.575 9 N -0.310 5.310 10 N -0.363 5.363 11 C 0.365 3.635 12 N -0.465 5.465 13 C 0.038 3.962 14 C 0.194 3.806 15 H 0.027 0.973 16 C -0.157 4.157 17 C -0.508 4.508 18 H 0.051 0.949 19 C 0.050 3.950 20 N -0.927 5.927 21 Si 0.955 3.045 22 H -0.257 1.257 23 H -0.300 1.300 24 H -0.287 1.287 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.407 0.593 34 H 0.033 0.967 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.647 -5.542 20.277 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.033 4.033 3 N -0.171 5.171 4 C -0.103 4.103 5 C 0.142 3.858 6 H 0.122 0.878 7 C -0.228 4.228 8 O -0.385 6.385 9 N -0.149 5.149 10 N -0.208 5.208 11 C 0.008 3.992 12 N -0.190 5.190 13 C -0.108 4.108 14 C 0.090 3.910 15 H 0.045 0.955 16 C -0.216 4.216 17 C -0.547 4.547 18 H 0.069 0.931 19 C -0.151 4.151 20 N -0.566 5.566 21 Si 0.783 3.217 22 H -0.182 1.182 23 H -0.228 1.228 24 H -0.214 1.214 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.126 0.874 28 H 0.106 0.894 29 H 0.142 0.858 30 H 0.125 0.875 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.260 0.740 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.609 -4.529 19.550 22.250 hybrid contribution -0.070 -1.011 0.226 1.038 sum -9.679 -5.539 19.776 22.704 Atomic orbital electron populations 1.22286 0.91551 1.05092 1.03420 1.22326 0.97620 0.77246 1.06103 1.46468 1.51041 1.14631 1.04953 1.24913 1.04583 0.88167 0.92654 1.19840 0.87450 0.98835 0.79677 0.87797 1.22424 0.95297 1.01215 1.03820 1.86582 1.43755 1.84375 1.23747 1.73829 1.17070 1.20766 1.03216 1.74623 1.26141 1.16304 1.03744 1.23283 0.98749 0.87770 0.89414 1.59616 1.18936 1.45213 0.95272 1.22437 0.84997 1.00307 1.03070 1.19536 0.93211 0.87898 0.90353 0.95501 1.22260 0.99522 0.98068 1.01775 1.20987 1.30781 1.11382 0.91521 0.93058 1.25544 0.96103 0.96762 0.96722 1.70019 1.41737 1.23038 1.21796 0.85571 0.77767 0.78739 0.79586 1.18205 1.22791 1.21353 0.90200 0.93029 0.87378 0.89359 0.85826 0.87475 0.93238 0.90943 0.74041 0.94842 0.89919 0.89567 0.93006 0.93249 0.91555 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 9.80 71.98 0.71 -1.80 16 2 C 0.09 1.90 5.79 86.38 0.50 2.40 16 3 N -0.47 -15.29 2.81 -514.85 -1.45 -16.74 16 4 C 0.17 5.36 6.95 137.64 0.96 6.32 16 5 C 0.20 4.00 3.99 29.85 0.12 4.12 16 6 H 0.10 1.28 7.09 -2.39 -0.02 1.26 16 7 C -0.17 -2.48 9.52 71.98 0.69 -1.80 16 8 O -0.58 -12.28 13.30 -148.98 -1.98 -14.26 16 9 N -0.31 -13.02 12.18 -49.54 -0.60 -13.63 16 10 N -0.36 -16.75 9.10 -58.01 -0.53 -17.28 16 11 C 0.36 15.23 6.69 260.11 1.74 16.97 16 12 N -0.47 -20.42 2.89 -711.01 -2.06 -22.48 16 13 C 0.04 1.42 8.32 127.69 1.06 2.48 16 14 C 0.19 9.71 1.41 44.17 0.06 9.77 16 15 H 0.03 1.50 6.73 -2.39 -0.02 1.48 16 16 C -0.16 -7.12 8.54 71.98 0.61 -6.50 16 17 C -0.51 -28.40 7.66 25.60 0.20 -28.20 16 18 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 19 C 0.05 2.87 5.47 84.65 0.46 3.34 16 20 N -0.93 -55.58 13.96 21.44 0.30 -55.28 16 21 Si 0.95 47.77 26.37 68.60 1.81 49.58 16 22 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 23 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 24 H -0.29 -15.20 6.42 99.48 0.64 -14.56 16 25 H 0.08 0.93 7.66 -2.39 -0.02 0.91 16 26 H 0.05 1.00 6.18 -2.39 -0.01 0.99 16 27 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 2.23 7.79 -2.39 -0.02 2.22 16 29 H 0.12 1.80 7.34 -2.38 -0.02 1.79 16 30 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 33 H 0.41 3.42 9.08 -74.06 -0.67 2.75 16 34 H 0.03 1.19 6.69 -2.39 -0.02 1.18 16 35 H 0.08 3.47 6.80 -2.39 -0.02 3.45 16 36 H 0.09 2.59 4.67 -2.39 -0.01 2.58 16 37 H 0.05 2.30 8.13 -2.39 -0.02 2.28 16 38 H 0.05 2.08 6.25 -2.39 -0.01 2.07 16 39 H 0.07 3.03 5.73 -2.38 -0.01 3.02 16 40 H 0.27 15.16 8.31 -92.70 -0.77 14.38 16 Total: -1.00 -78.61 313.89 2.91 -75.70 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.32 Total: 7.29 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 7.10 Total: 7.10 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -4.34 Total: -125.40 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.98 Total: -14.26 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.81 Total: 49.58 kcal Total: -78.61 2.91 -75.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263043275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.682 kcal (2) G-P(sol) polarization free energy of solvation -78.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds