Wall clock time and date at job start Mon Mar 30 2020 01:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46873 * 60.00018 * 8 6 4 10 10 H 1.48503 * 109.47134 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47271 * 299.99819 * 8 6 4 12 12 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 13 13 O 1.20833 * 119.99914 * 240.00003 * 12 2 1 14 14 O 1.34225 * 120.00258 * 59.99192 * 12 2 1 15 15 C 1.45198 * 117.00155 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47354 * 180.02562 * 15 14 12 17 17 C 1.52992 * 109.47300 * 295.00379 * 16 15 14 18 18 C 1.53002 * 109.47300 * 180.02562 * 17 16 15 19 19 C 1.52994 * 109.47125 * 59.99848 * 18 17 16 20 20 C 1.53002 * 109.47125 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.47218 * 60.00243 * 19 18 17 22 22 C 1.53002 * 109.47188 * 300.00247 * 19 18 17 23 23 C 1.52994 * 109.47375 * 60.00049 * 22 19 18 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47463 * 300.00484 * 15 14 12 29 29 H 1.09000 * 109.46924 * 60.00513 * 15 14 12 30 30 H 1.08999 * 109.46737 * 55.00744 * 16 15 14 31 31 H 1.09006 * 109.46873 * 299.99845 * 17 16 15 32 32 H 1.08996 * 109.47525 * 59.99476 * 17 16 15 33 33 H 1.08996 * 109.46960 * 299.99883 * 18 17 16 34 34 H 1.09005 * 109.46811 * 179.97438 * 18 17 16 35 35 H 1.09001 * 109.46926 * 179.97438 * 20 19 18 36 36 H 1.08995 * 109.47542 * 300.00304 * 20 19 18 37 37 H 1.09009 * 109.46809 * 60.00381 * 20 19 18 38 38 H 1.09001 * 109.47087 * 299.99867 * 21 19 18 39 39 H 1.08995 * 109.47339 * 60.00087 * 21 19 18 40 40 H 1.09001 * 109.47166 * 180.02562 * 21 19 18 41 41 H 1.09006 * 109.46851 * 300.00027 * 22 19 18 42 42 H 1.09004 * 109.46778 * 180.02562 * 22 19 18 43 43 H 1.08995 * 109.47367 * 180.02562 * 23 22 19 44 44 H 1.08996 * 109.47077 * 60.00026 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5203 4.0076 12 6 2.0324 -0.7103 -1.2305 13 8 2.7271 -1.6927 -1.1197 14 8 1.7080 -0.2517 -2.4496 15 6 2.2268 -0.9861 -3.5897 16 6 1.7557 -0.3189 -4.8834 17 6 0.2334 -0.4294 -4.9893 18 6 -0.2376 0.2373 -6.2834 19 6 0.4090 -0.4608 -7.4814 20 6 -0.0625 0.2055 -8.7755 21 6 0.0043 -1.9363 -7.4913 22 6 1.9314 -0.3503 -7.3755 23 6 2.4024 -1.0170 -6.0815 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7095 1.1617 3.4844 28 1 3.3163 -0.9858 -3.5570 29 1 1.8626 -2.0129 -3.5566 30 1 2.0441 0.7323 -4.8759 31 1 -0.0549 -1.4806 -4.9968 32 1 -0.2272 0.0675 -4.1356 33 1 0.0508 1.2884 -6.2763 34 1 -1.3221 0.1581 -6.3590 35 1 0.3985 -0.2917 -9.6290 36 1 -1.1470 0.1264 -8.8507 37 1 0.2256 1.2568 -8.7687 38 1 0.3398 -2.4113 -6.5694 39 1 -1.0802 -2.0151 -7.5668 40 1 0.4653 -2.4338 -8.3446 41 1 2.2197 0.7009 -7.3685 42 1 2.3920 -0.8474 -8.2293 43 1 3.4868 -0.9379 -6.0059 44 1 2.1140 -2.0681 -6.0886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263385278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:11 Heat of formation + Delta-G solvation = -133.304357 kcal Electronic energy + Delta-G solvation = -21190.222232 eV Core-core repulsion = 18105.852475 eV Total energy + Delta-G solvation = -3084.369758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.98260 -39.18674 -35.88041 -33.85854 -33.71788 -30.88524 -30.58794 -28.20534 -27.50355 -25.18474 -24.36516 -22.92960 -22.51821 -20.50249 -19.69370 -18.50923 -16.63104 -16.02773 -15.83690 -15.60278 -15.12509 -14.95020 -14.42051 -14.13825 -13.90132 -13.43963 -13.29167 -12.77100 -12.47229 -12.39521 -12.13874 -12.03419 -11.92632 -11.61295 -11.45426 -11.22490 -11.05943 -10.98600 -10.95098 -10.78511 -10.67101 -10.32324 -10.21970 -10.16961 -10.05784 -10.02172 -9.81996 -9.05238 -9.02921 -8.42578 -6.08556 -4.13947 3.33373 3.36153 3.37815 3.39670 3.58746 4.42311 4.48522 4.55483 4.61097 4.91294 5.05082 5.14514 5.24597 5.25851 5.29846 5.43169 5.44872 5.49854 5.52392 5.64348 5.65571 5.72493 5.81801 5.83301 5.89277 5.91502 5.97484 6.09002 6.10503 6.18930 6.23216 6.30247 6.46341 6.51504 6.69173 6.90107 6.91381 7.30127 7.47071 7.76599 7.96898 8.17170 8.89708 8.97422 9.51477 10.98847 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.044862 B = 0.003536 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.983914 B = 7917.047232 C = 8213.426246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.057 3.943 3 H 0.063 0.937 4 C -0.513 4.513 5 H 0.074 0.926 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.464 3.536 13 O -0.520 6.520 14 O -0.364 6.364 15 C 0.067 3.933 16 C -0.083 4.083 17 C -0.116 4.116 18 C -0.107 4.107 19 C -0.067 4.067 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.104 4.104 23 C -0.115 4.115 24 H 0.095 0.905 25 H 0.023 0.977 26 H 0.030 0.970 27 H 0.264 0.736 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.197 -0.610 -20.443 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.038 3.962 3 H 0.081 0.919 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.309 3.691 13 O -0.408 6.408 14 O -0.282 6.282 15 C -0.007 4.007 16 C -0.102 4.102 17 C -0.153 4.153 18 C -0.145 4.145 19 C -0.067 4.067 20 C -0.198 4.198 21 C -0.203 4.203 22 C -0.142 4.142 23 C -0.153 4.153 24 H 0.114 0.886 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.064 -0.803 -20.297 20.418 hybrid contribution 0.441 -0.574 0.774 1.059 sum -1.624 -1.376 -19.523 19.639 Atomic orbital electron populations 1.21720 0.95655 0.99961 1.01664 1.18734 0.94826 0.96923 0.85679 0.91923 1.21106 1.31894 1.13230 0.88871 0.90739 1.24929 0.94915 0.95020 0.99098 1.69870 1.36551 1.22806 1.23919 0.86440 0.79292 0.79681 0.81359 1.20096 1.21215 1.20092 1.25308 0.76534 0.83178 0.84117 1.90489 1.36489 1.26864 1.86914 1.86596 1.70400 1.55842 1.15404 1.22888 0.98364 0.95380 0.84117 1.21154 0.96203 1.00732 0.92081 1.21608 0.94742 1.01244 0.97728 1.21597 0.99690 0.99410 0.93761 1.20564 0.95300 0.95720 0.95147 1.21865 1.00937 1.00348 0.96663 1.21980 1.00984 0.95358 1.01935 1.21551 0.94680 1.00866 0.97082 1.21557 0.99915 1.00062 0.93727 0.88636 0.95794 0.95071 0.92662 0.92124 0.92126 0.90247 0.91865 0.90777 0.91942 0.92063 0.92915 0.92776 0.92759 0.91833 0.92890 0.93051 0.91894 0.92046 0.91818 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.90 37.16 0.33 -2.84 16 2 C 0.06 1.48 2.74 -92.92 -0.25 1.23 16 3 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 4 C -0.51 -14.63 8.37 -34.45 -0.29 -14.92 16 5 H 0.07 2.21 6.76 -52.49 -0.35 1.86 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.46 11.15 7.25 36.00 0.26 11.41 16 13 O -0.52 -13.59 15.21 -18.76 -0.29 -13.88 16 14 O -0.36 -7.35 9.66 -39.25 -0.38 -7.73 16 15 C 0.07 1.09 4.84 37.16 0.18 1.27 16 16 C -0.08 -1.04 2.44 -90.62 -0.22 -1.26 16 17 C -0.12 -1.39 4.83 -26.73 -0.13 -1.52 16 18 C -0.11 -1.06 4.73 -26.73 -0.13 -1.19 16 19 C -0.07 -0.59 0.77 -154.51 -0.12 -0.71 16 20 C -0.14 -1.07 8.47 37.16 0.31 -0.76 16 21 C -0.15 -1.25 7.78 37.16 0.29 -0.96 16 22 C -0.10 -0.92 4.73 -26.73 -0.13 -1.05 16 23 C -0.12 -1.17 4.93 -26.73 -0.13 -1.30 16 24 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 25 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 29 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 32 H 0.07 1.02 7.82 -51.93 -0.41 0.62 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.06 0.59 4.81 -51.93 -0.25 0.35 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.68 6.43 -51.93 -0.33 0.34 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -29.52 339.99 -7.94 -37.46 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.89 Total: -2.20 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -0.12 Total: -10.98 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 0.63 Total: -24.45 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.66 Total: -21.61 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.52 -7.94 -37.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263385278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.847 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds