Wall clock time and date at job start Mon Mar 30 2020 01:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46873 * 60.00018 * 8 6 4 10 10 H 1.48503 * 109.47134 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47271 * 299.99819 * 8 6 4 12 12 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 13 13 O 1.20833 * 119.99914 * 240.00003 * 12 2 1 14 14 O 1.34225 * 120.00258 * 59.99192 * 12 2 1 15 15 C 1.45198 * 117.00155 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47354 * 180.02562 * 15 14 12 17 17 C 1.52992 * 109.47300 * 295.00379 * 16 15 14 18 18 C 1.53002 * 109.47300 * 180.02562 * 17 16 15 19 19 C 1.52994 * 109.47125 * 59.99848 * 18 17 16 20 20 C 1.53002 * 109.47125 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.47218 * 60.00243 * 19 18 17 22 22 C 1.53002 * 109.47188 * 300.00247 * 19 18 17 23 23 C 1.52994 * 109.47375 * 60.00049 * 22 19 18 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47463 * 300.00484 * 15 14 12 29 29 H 1.09000 * 109.46924 * 60.00513 * 15 14 12 30 30 H 1.08999 * 109.46737 * 55.00744 * 16 15 14 31 31 H 1.09006 * 109.46873 * 299.99845 * 17 16 15 32 32 H 1.08996 * 109.47525 * 59.99476 * 17 16 15 33 33 H 1.08996 * 109.46960 * 299.99883 * 18 17 16 34 34 H 1.09005 * 109.46811 * 179.97438 * 18 17 16 35 35 H 1.09001 * 109.46926 * 179.97438 * 20 19 18 36 36 H 1.08995 * 109.47542 * 300.00304 * 20 19 18 37 37 H 1.09009 * 109.46809 * 60.00381 * 20 19 18 38 38 H 1.09001 * 109.47087 * 299.99867 * 21 19 18 39 39 H 1.08995 * 109.47339 * 60.00087 * 21 19 18 40 40 H 1.09001 * 109.47166 * 180.02562 * 21 19 18 41 41 H 1.09006 * 109.46851 * 300.00027 * 22 19 18 42 42 H 1.09004 * 109.46778 * 180.02562 * 22 19 18 43 43 H 1.08995 * 109.47367 * 180.02562 * 23 22 19 44 44 H 1.08996 * 109.47077 * 60.00026 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5203 4.0076 12 6 2.0324 -0.7103 -1.2305 13 8 2.7271 -1.6927 -1.1197 14 8 1.7080 -0.2517 -2.4496 15 6 2.2268 -0.9861 -3.5897 16 6 1.7557 -0.3189 -4.8834 17 6 0.2334 -0.4294 -4.9893 18 6 -0.2376 0.2373 -6.2834 19 6 0.4090 -0.4608 -7.4814 20 6 -0.0625 0.2055 -8.7755 21 6 0.0043 -1.9363 -7.4913 22 6 1.9314 -0.3503 -7.3755 23 6 2.4024 -1.0170 -6.0815 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7095 1.1617 3.4844 28 1 3.3163 -0.9858 -3.5570 29 1 1.8626 -2.0129 -3.5566 30 1 2.0441 0.7323 -4.8759 31 1 -0.0549 -1.4806 -4.9968 32 1 -0.2272 0.0675 -4.1356 33 1 0.0508 1.2884 -6.2763 34 1 -1.3221 0.1581 -6.3590 35 1 0.3985 -0.2917 -9.6290 36 1 -1.1470 0.1264 -8.8507 37 1 0.2256 1.2568 -8.7687 38 1 0.3398 -2.4113 -6.5694 39 1 -1.0802 -2.0151 -7.5668 40 1 0.4653 -2.4338 -8.3446 41 1 2.2197 0.7009 -7.3685 42 1 2.3920 -0.8474 -8.2293 43 1 3.4868 -0.9379 -6.0059 44 1 2.1140 -2.0681 -6.0886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263385278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:11 Heat of formation + Delta-G solvation = -146.895036 kcal Electronic energy + Delta-G solvation = -21190.811569 eV Core-core repulsion = 18105.852475 eV Total energy + Delta-G solvation = -3084.959094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.44005 -40.39964 -37.55328 -35.92903 -34.77896 -32.64580 -31.71426 -29.25641 -28.14768 -27.29335 -25.67349 -24.32069 -23.62112 -21.55466 -21.48147 -19.32053 -18.60454 -17.97791 -17.56225 -17.15197 -16.33883 -16.03611 -15.68623 -15.34309 -14.86624 -14.83499 -14.46196 -14.26132 -13.89120 -13.57453 -13.34163 -13.14647 -12.98806 -12.82585 -12.75754 -12.64229 -12.59049 -12.36839 -12.31206 -12.18025 -12.05449 -11.89096 -11.83480 -11.45174 -11.15359 -11.10500 -11.03875 -10.89947 -10.77349 -10.53739 -8.20906 -6.34613 1.41573 1.42713 1.45515 1.51747 1.93090 2.43576 3.08968 3.60813 3.69871 3.79211 4.00776 4.11147 4.19540 4.23200 4.40639 4.48095 4.50624 4.57942 4.64231 4.67504 4.70367 4.80086 4.88876 4.89405 4.96447 4.98673 5.01815 5.11523 5.14053 5.18010 5.23274 5.25251 5.28908 5.38077 5.43148 5.50809 5.53373 5.58223 5.67615 5.70686 5.87668 6.09619 6.71583 7.05963 7.34324 8.85453 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.044862 B = 0.003536 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.983914 B = 7917.047232 C = 8213.426246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.050 3.950 3 H 0.050 0.950 4 C -0.542 4.542 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.471 3.529 13 O -0.546 6.546 14 O -0.359 6.359 15 C 0.061 3.939 16 C -0.075 4.075 17 C -0.115 4.115 18 C -0.103 4.103 19 C -0.066 4.066 20 C -0.138 4.138 21 C -0.145 4.145 22 C -0.101 4.101 23 C -0.111 4.111 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.027 0.973 27 H 0.269 0.731 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.326 -0.695 -21.792 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.031 3.969 3 H 0.068 0.932 4 C -0.580 4.580 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.197 1.197 11 H -0.199 1.199 12 C 0.317 3.683 13 O -0.436 6.436 14 O -0.276 6.276 15 C -0.013 4.013 16 C -0.094 4.094 17 C -0.153 4.153 18 C -0.141 4.141 19 C -0.066 4.066 20 C -0.195 4.195 21 C -0.203 4.203 22 C -0.139 4.139 23 C -0.149 4.149 24 H 0.096 0.904 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.207 -0.868 -21.671 21.801 hybrid contribution 0.474 -0.527 1.126 1.330 sum -1.734 -1.395 -20.545 20.665 Atomic orbital electron populations 1.21544 0.94329 0.99802 1.01968 1.18666 0.95939 0.96073 0.86241 0.93246 1.21238 1.32782 1.13359 0.90617 0.92647 1.25642 0.94841 0.95644 1.01562 1.69951 1.36583 1.23348 1.24853 0.85523 0.78726 0.78685 0.78211 1.19923 1.19748 1.19860 1.24847 0.75971 0.82505 0.85021 1.90467 1.37656 1.27952 1.87562 1.86553 1.70010 1.55907 1.15159 1.23290 0.98481 0.95530 0.83961 1.21170 0.96738 1.00546 0.90906 1.21583 0.94208 1.01262 0.98214 1.21572 1.00092 0.99309 0.93116 1.20563 0.95171 0.95760 0.95118 1.21832 1.01166 1.00417 0.96120 1.21977 1.01212 0.95231 1.01831 1.21548 0.94735 1.01013 0.96564 1.21552 1.00054 1.00059 0.93208 0.90374 0.93296 0.95349 0.92193 0.92127 0.92288 0.90339 0.91881 0.92955 0.91905 0.91595 0.92017 0.92545 0.92558 0.92858 0.92717 0.92051 0.91660 0.90546 0.91297 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.90 71.98 0.64 -5.07 16 2 C 0.05 2.62 2.74 -12.29 -0.03 2.59 16 3 H 0.05 2.71 8.14 -2.39 -0.02 2.69 16 4 C -0.54 -31.48 8.37 25.60 0.21 -31.26 16 5 H 0.06 3.37 6.76 -2.91 -0.02 3.35 16 6 C 0.02 1.29 5.30 84.65 0.45 1.74 16 7 N -0.91 -51.07 11.32 21.44 0.24 -50.82 16 8 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.47 22.98 7.25 71.24 0.52 23.49 16 13 O -0.55 -29.09 15.21 21.94 0.33 -28.76 16 14 O -0.36 -14.54 9.66 -51.37 -0.50 -15.03 16 15 C 0.06 1.97 4.84 71.98 0.35 2.31 16 16 C -0.08 -1.80 2.44 -10.79 -0.03 -1.83 16 17 C -0.12 -2.68 4.83 30.59 0.15 -2.53 16 18 C -0.10 -1.89 4.73 30.59 0.14 -1.75 16 19 C -0.07 -1.00 0.77 -52.18 -0.04 -1.04 16 20 C -0.14 -1.74 8.47 71.98 0.61 -1.13 16 21 C -0.15 -2.20 7.78 71.98 0.56 -1.64 16 22 C -0.10 -1.53 4.73 30.59 0.14 -1.38 16 23 C -0.11 -2.06 4.93 30.59 0.15 -1.91 16 24 H 0.08 4.05 6.07 -2.39 -0.01 4.03 16 25 H 0.05 2.05 8.11 -2.39 -0.02 2.03 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 28 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 29 H 0.06 1.92 8.13 -2.39 -0.02 1.90 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.46 6.43 -2.38 -0.02 1.44 16 32 H 0.05 1.43 7.82 -2.39 -0.02 1.41 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.05 0.91 4.81 -2.39 -0.01 0.90 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.28 6.43 -2.39 -0.02 1.27 16 Total: -1.00 -62.62 339.99 6.88 -55.74 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.94 Total: 11.93 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 3.83 Total: -19.41 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.24 Total: -50.82 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -0.16 Total: -43.79 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -62.62 6.88 -55.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263385278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.154 kcal (2) G-P(sol) polarization free energy of solvation -62.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds