Wall clock time and date at job start Mon Mar 30 2020 00:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 O 1.45194 * 109.47550 * 64.99895 * 3 2 1 6 6 C 1.34227 * 117.00195 * 270.00175 * 5 3 2 7 7 O 1.20824 * 120.00013 * 359.97438 * 6 5 3 8 8 C 1.50698 * 120.00334 * 179.97438 * 6 5 3 9 9 C 1.52998 * 109.47360 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47143 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47143 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47360 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99955 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00310 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00039 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00200 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47020 * 90.00217 * 16 14 12 18 18 H 1.48497 * 109.47237 * 210.00175 * 16 14 12 19 19 H 1.48495 * 109.47060 * 329.99908 * 16 14 12 20 20 C 1.53006 * 109.46846 * 185.00166 * 3 2 1 21 21 C 1.53780 * 113.60898 * 279.13276 * 20 3 2 22 22 C 1.53953 * 87.01917 * 220.04840 * 21 20 3 23 23 C 1.53776 * 113.61311 * 181.52724 * 20 3 2 24 24 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47203 * 300.00119 * 8 6 5 30 30 H 1.09002 * 109.47085 * 59.99308 * 8 6 5 31 31 H 1.09005 * 109.46619 * 299.99831 * 9 8 6 32 32 H 1.08993 * 109.47115 * 59.99710 * 9 8 6 33 33 H 1.09005 * 109.47024 * 299.99337 * 10 9 8 34 34 H 1.09002 * 109.47382 * 59.99710 * 10 9 8 35 35 H 1.09002 * 109.46874 * 299.99133 * 11 10 9 36 36 H 1.09002 * 109.47667 * 59.99320 * 11 10 9 37 37 H 0.97002 * 119.99969 * 180.02562 * 15 14 12 38 38 H 1.09000 * 112.85012 * 50.33226 * 20 3 2 39 39 H 1.09000 * 113.61939 * 334.56909 * 21 20 3 40 40 H 1.09000 * 113.61492 * 105.47760 * 21 20 3 41 41 H 1.09004 * 113.54210 * 270.81920 * 22 21 20 42 42 H 1.08998 * 113.74670 * 139.94670 * 22 21 20 43 43 H 1.09003 * 113.61674 * 254.52717 * 23 20 3 44 44 H 1.09006 * 113.61609 * 25.43431 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6559 2.0917 1.2406 6 6 0.4727 2.7255 1.2559 7 8 -0.2189 2.7378 0.2652 8 6 0.0069 3.4218 2.5086 9 6 -1.3617 4.0585 2.2593 10 6 -1.8343 4.7659 3.5310 11 6 -3.2027 5.4032 3.2816 12 6 -3.6685 6.0995 4.5343 13 1 -3.0505 6.0882 5.4200 14 6 -4.8835 6.7509 4.5498 15 7 -5.6363 6.7642 3.4715 16 14 -5.4612 7.6133 6.1028 17 1 -4.9876 9.0208 6.0927 18 1 -6.9449 7.5907 6.1589 19 1 -4.9102 6.9141 7.2914 20 6 3.5648 1.4443 -0.1258 21 6 4.2927 1.1810 1.2030 22 6 5.3055 2.2560 0.7686 23 6 4.1835 2.8518 -0.0981 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 -0.0720 2.6972 3.3191 30 1 0.7240 4.1959 2.7820 31 1 -1.2831 4.7831 1.4488 32 1 -2.0784 3.2841 1.9862 33 1 -1.9128 4.0417 4.3419 34 1 -1.1175 5.5405 3.8037 35 1 -3.1238 6.1276 2.4709 36 1 -3.9198 4.6290 3.0085 37 1 -6.4910 7.2229 3.4823 38 1 3.9223 0.8263 -0.9494 39 1 3.7112 1.4589 2.0820 40 1 4.7204 0.1811 1.2760 41 1 6.1401 1.8595 0.1902 42 1 5.6256 2.9107 1.5792 43 1 4.5231 3.1988 -1.0740 44 1 3.5721 3.5874 0.4247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263530808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:41 Heat of formation + Delta-G solvation = -108.952458 kcal Electronic energy + Delta-G solvation = -20578.461568 eV Core-core repulsion = 17495.147787 eV Total energy + Delta-G solvation = -3083.313780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.84259 -38.91614 -36.39615 -34.93898 -33.68080 -32.62966 -29.93789 -28.46894 -25.89828 -25.85690 -23.71073 -22.96080 -21.28577 -20.52848 -20.01249 -19.38623 -17.53017 -16.80138 -16.27067 -16.12575 -15.65734 -14.88890 -14.80712 -14.43679 -14.09849 -13.50336 -13.06438 -12.78596 -12.67088 -12.58463 -12.39387 -12.31681 -11.98204 -11.80611 -11.70778 -11.63075 -11.08671 -10.99785 -10.84995 -10.72545 -10.58869 -10.53374 -10.45368 -10.38241 -10.24121 -10.00656 -9.64233 -9.27798 -9.01456 -8.31328 -5.96113 -3.98697 2.37357 2.72769 3.33975 3.40061 3.43341 4.18112 4.37290 4.42055 4.48627 4.60142 4.77039 4.86458 4.87961 4.97172 5.23040 5.29714 5.33644 5.39463 5.40240 5.43065 5.53990 5.58718 5.64972 5.69937 5.74872 5.75446 5.78737 5.92972 6.01744 6.07190 6.19473 6.22796 6.27875 6.47266 6.58710 6.77892 6.96234 7.17015 7.72602 7.87630 7.92299 8.04824 8.46599 9.08916 9.65162 11.15241 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.032498 B = 0.002988 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.372092 B = 9368.106423 C = 9855.964718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C 0.096 3.904 4 H 0.085 0.915 5 O -0.352 6.352 6 C 0.457 3.543 7 O -0.502 6.502 8 C -0.113 4.113 9 C -0.107 4.107 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.112 4.112 21 C -0.130 4.130 22 C -0.143 4.143 23 C -0.136 4.136 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.005 -13.200 -6.996 25.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.174 4.174 3 C 0.041 3.959 4 H 0.103 0.897 5 O -0.269 6.269 6 C 0.301 3.699 7 O -0.388 6.388 8 C -0.150 4.150 9 C -0.145 4.145 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.131 4.131 21 C -0.167 4.167 22 C -0.180 4.180 23 C -0.173 4.173 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 20.641 -13.154 -7.387 25.567 hybrid contribution -0.462 0.456 0.621 0.899 sum 20.179 -12.699 -6.766 24.783 Atomic orbital electron populations 1.21844 0.94794 1.01380 1.02937 1.21919 0.97038 0.95553 1.02866 1.22569 0.94585 0.92944 0.85807 0.89719 1.86537 1.37555 1.63791 1.39046 1.24106 0.78835 0.75828 0.91153 1.90661 1.54676 1.57516 1.35992 1.21597 1.00120 1.00399 0.92931 1.21557 0.92594 1.00070 1.00259 1.21649 1.00111 0.98436 0.94565 1.19092 0.90153 0.95514 0.96919 1.21278 1.03344 1.33173 0.98108 0.92703 1.25039 0.96815 0.96541 0.96164 1.69973 1.12087 1.43558 1.27876 0.86605 0.77802 0.79985 0.83669 1.20695 1.21252 1.19887 1.22762 0.91942 0.98738 0.99609 1.22899 0.97361 0.98791 0.97670 1.22823 0.96668 0.98648 0.99857 1.22923 0.97860 0.96233 1.00326 0.91863 0.92835 0.92823 0.90585 0.91053 0.88105 0.88098 0.91601 0.91600 0.93253 0.93257 0.96574 0.96567 0.93031 0.87781 0.88796 0.91773 0.90472 0.91346 0.91596 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.57 37.16 0.32 -1.41 16 2 C -0.14 -1.28 5.63 -26.73 -0.15 -1.43 16 3 C 0.10 1.00 2.26 -26.73 -0.06 0.94 16 4 H 0.08 1.01 7.16 -51.93 -0.37 0.64 16 5 O -0.35 -4.22 7.93 -39.25 -0.31 -4.54 16 6 C 0.46 6.42 6.41 36.00 0.23 6.65 16 7 O -0.50 -8.37 13.13 -18.75 -0.25 -8.61 16 8 C -0.11 -1.52 5.81 -27.88 -0.16 -1.68 16 9 C -0.11 -1.86 4.50 -26.73 -0.12 -1.98 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 13 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 16 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 C -0.11 -0.92 3.58 -89.81 -0.32 -1.24 16 21 C -0.13 -1.03 7.49 -25.83 -0.19 -1.22 16 22 C -0.14 -1.05 8.09 -25.83 -0.21 -1.26 16 23 C -0.14 -1.15 7.54 -25.92 -0.20 -1.34 16 24 H 0.06 0.79 7.80 -51.93 -0.40 0.38 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.71 6.06 -51.93 -0.31 0.39 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.07 1.21 8.10 -51.93 -0.42 0.78 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.86 7.01 -51.93 -0.36 0.50 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.83 7.72 -51.93 -0.40 0.43 16 LS Contribution 351.75 15.07 5.30 5.30 Total: -1.00 -31.42 351.75 -9.25 -40.67 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -8.16 Total: -3.23 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -1.55 Total: -19.71 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.74 Total: -26.73 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.56 Total: -13.15 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.42 -9.25 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263530808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.287 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds