Wall clock time and date at job start Mon Mar 30 2020 00:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 O 1.45194 * 109.47550 * 64.99895 * 3 2 1 6 6 C 1.34227 * 117.00195 * 270.00175 * 5 3 2 7 7 O 1.20824 * 120.00013 * 359.97438 * 6 5 3 8 8 C 1.50698 * 120.00334 * 179.97438 * 6 5 3 9 9 C 1.52998 * 109.47360 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47143 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47143 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47360 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99955 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00310 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00039 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00200 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47020 * 90.00217 * 16 14 12 18 18 H 1.48497 * 109.47237 * 210.00175 * 16 14 12 19 19 H 1.48495 * 109.47060 * 329.99908 * 16 14 12 20 20 C 1.53006 * 109.46846 * 185.00166 * 3 2 1 21 21 C 1.53780 * 113.60898 * 279.13276 * 20 3 2 22 22 C 1.53953 * 87.01917 * 220.04840 * 21 20 3 23 23 C 1.53776 * 113.61311 * 181.52724 * 20 3 2 24 24 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47203 * 300.00119 * 8 6 5 30 30 H 1.09002 * 109.47085 * 59.99308 * 8 6 5 31 31 H 1.09005 * 109.46619 * 299.99831 * 9 8 6 32 32 H 1.08993 * 109.47115 * 59.99710 * 9 8 6 33 33 H 1.09005 * 109.47024 * 299.99337 * 10 9 8 34 34 H 1.09002 * 109.47382 * 59.99710 * 10 9 8 35 35 H 1.09002 * 109.46874 * 299.99133 * 11 10 9 36 36 H 1.09002 * 109.47667 * 59.99320 * 11 10 9 37 37 H 0.97002 * 119.99969 * 180.02562 * 15 14 12 38 38 H 1.09000 * 112.85012 * 50.33226 * 20 3 2 39 39 H 1.09000 * 113.61939 * 334.56909 * 21 20 3 40 40 H 1.09000 * 113.61492 * 105.47760 * 21 20 3 41 41 H 1.09004 * 113.54210 * 270.81920 * 22 21 20 42 42 H 1.08998 * 113.74670 * 139.94670 * 22 21 20 43 43 H 1.09003 * 113.61674 * 254.52717 * 23 20 3 44 44 H 1.09006 * 113.61609 * 25.43431 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6559 2.0917 1.2406 6 6 0.4727 2.7255 1.2559 7 8 -0.2189 2.7378 0.2652 8 6 0.0069 3.4218 2.5086 9 6 -1.3617 4.0585 2.2593 10 6 -1.8343 4.7659 3.5310 11 6 -3.2027 5.4032 3.2816 12 6 -3.6685 6.0995 4.5343 13 1 -3.0505 6.0882 5.4200 14 6 -4.8835 6.7509 4.5498 15 7 -5.6363 6.7642 3.4715 16 14 -5.4612 7.6133 6.1028 17 1 -4.9876 9.0208 6.0927 18 1 -6.9449 7.5907 6.1589 19 1 -4.9102 6.9141 7.2914 20 6 3.5648 1.4443 -0.1258 21 6 4.2927 1.1810 1.2030 22 6 5.3055 2.2560 0.7686 23 6 4.1835 2.8518 -0.0981 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 -0.0720 2.6972 3.3191 30 1 0.7240 4.1959 2.7820 31 1 -1.2831 4.7831 1.4488 32 1 -2.0784 3.2841 1.9862 33 1 -1.9128 4.0417 4.3419 34 1 -1.1175 5.5405 3.8037 35 1 -3.1238 6.1276 2.4709 36 1 -3.9198 4.6290 3.0085 37 1 -6.4910 7.2229 3.4823 38 1 3.9223 0.8263 -0.9494 39 1 3.7112 1.4589 2.0820 40 1 4.7204 0.1811 1.2760 41 1 6.1401 1.8595 0.1902 42 1 5.6256 2.9107 1.5792 43 1 4.5231 3.1988 -1.0740 44 1 3.5721 3.5874 0.4247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263530808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:40 Heat of formation + Delta-G solvation = -124.070540 kcal Electronic energy + Delta-G solvation = -20579.117137 eV Core-core repulsion = 17495.147787 eV Total energy + Delta-G solvation = -3083.969350 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.84372 -39.71802 -37.44137 -36.57753 -34.75435 -34.41367 -31.64171 -29.35210 -27.63354 -26.50914 -24.78916 -24.28204 -22.47116 -21.75984 -21.39983 -20.11420 -18.61913 -18.39035 -17.80190 -17.23189 -16.50766 -16.35554 -16.13552 -15.63988 -15.15482 -14.62703 -14.55456 -13.85004 -13.82284 -13.71516 -13.46377 -13.37200 -13.32061 -13.08935 -12.84651 -12.80780 -12.58376 -12.35851 -12.19880 -12.18798 -11.90871 -11.66209 -11.46946 -11.40742 -11.36700 -11.28353 -11.04281 -11.00661 -10.78339 -10.55111 -8.19121 -6.31054 1.26570 1.40585 1.42612 1.53727 1.73502 2.41940 3.13888 3.47131 3.66401 3.73581 3.81466 3.97068 3.99849 4.06630 4.07935 4.19964 4.20761 4.41107 4.59512 4.62365 4.65679 4.77254 4.78130 4.83155 4.85096 4.92122 4.96422 4.98155 5.05787 5.12500 5.13608 5.17405 5.25617 5.30716 5.32820 5.35843 5.54730 5.61778 5.66509 5.76879 5.87562 6.25073 6.84115 6.87501 7.38667 8.93124 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.032498 B = 0.002988 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.372092 B = 9368.106423 C = 9855.964718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C 0.090 3.910 4 H 0.065 0.935 5 O -0.345 6.345 6 C 0.461 3.539 7 O -0.535 6.535 8 C -0.105 4.105 9 C -0.098 4.098 10 C -0.096 4.096 11 C 0.020 3.980 12 C -0.542 4.542 13 H 0.066 0.934 14 C -0.006 4.006 15 N -0.938 5.938 16 Si 0.968 3.032 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.259 1.259 20 C -0.107 4.107 21 C -0.129 4.129 22 C -0.136 4.136 23 C -0.144 4.144 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.030 0.970 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.062 0.938 35 H -0.014 1.014 36 H -0.014 1.014 37 H 0.263 0.737 38 H 0.126 0.874 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.179 -14.041 -5.646 27.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.035 3.965 4 H 0.084 0.916 5 O -0.262 6.262 6 C 0.306 3.694 7 O -0.425 6.425 8 C -0.142 4.142 9 C -0.135 4.135 10 C -0.134 4.134 11 C -0.017 4.017 12 C -0.580 4.580 13 H 0.084 0.916 14 C -0.203 4.203 15 N -0.578 5.578 16 Si 0.793 3.207 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.183 1.183 20 C -0.125 4.125 21 C -0.166 4.166 22 C -0.173 4.173 23 C -0.181 4.181 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.118 0.882 28 H 0.099 0.901 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.004 0.996 36 H 0.005 0.995 37 H 0.072 0.928 38 H 0.144 0.856 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 22.849 -14.007 -6.026 27.469 hybrid contribution -1.138 0.697 0.131 1.340 sum 21.711 -13.311 -5.895 26.140 Atomic orbital electron populations 1.21821 0.96501 1.01635 1.00944 1.21926 0.95373 0.95048 1.04474 1.22797 0.96202 0.93126 0.84339 0.91640 1.86523 1.36289 1.63409 1.39968 1.24134 0.79027 0.75485 0.90743 1.90660 1.55744 1.58877 1.37210 1.21471 0.97964 1.01436 0.93341 1.21320 0.94819 0.99167 0.98231 1.21442 0.96783 0.98912 0.96235 1.19042 0.93082 0.94197 0.95422 1.21758 1.03868 1.33341 0.99050 0.91607 1.26072 0.97005 0.97348 0.99893 1.70126 1.12622 1.44599 1.30467 0.85397 0.77199 0.78871 0.79280 1.19720 1.20941 1.18342 1.22851 0.89981 0.98976 1.00723 1.22872 0.97257 0.99760 0.96733 1.22824 0.96648 0.98210 0.99648 1.22942 0.98331 0.96077 1.00787 0.93655 0.91395 0.95039 0.88218 0.90055 0.85757 0.85735 0.93233 0.93230 0.91951 0.91936 0.99557 0.99549 0.92843 0.85568 0.90200 0.90289 0.88863 0.91481 0.90942 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.57 71.98 0.62 -2.79 16 2 C -0.13 -2.24 5.63 30.59 0.17 -2.07 16 3 C 0.09 1.78 2.26 30.60 0.07 1.85 16 4 H 0.07 1.57 7.16 -2.39 -0.02 1.55 16 5 O -0.34 -8.00 7.93 -51.39 -0.41 -8.40 16 6 C 0.46 12.88 6.41 71.24 0.46 13.34 16 7 O -0.54 -18.45 13.13 21.97 0.29 -18.16 16 8 C -0.10 -2.69 5.81 29.85 0.17 -2.52 16 9 C -0.10 -3.44 4.50 30.59 0.14 -3.30 16 10 C -0.10 -3.89 5.15 30.59 0.16 -3.73 16 11 C 0.02 1.07 4.97 29.85 0.15 1.22 16 12 C -0.54 -31.39 9.11 25.60 0.23 -31.15 16 13 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 14 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 15 N -0.94 -58.89 13.29 21.44 0.28 -58.61 16 16 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 20 C -0.11 -1.54 3.58 -10.27 -0.04 -1.57 16 21 C -0.13 -1.72 7.49 31.18 0.23 -1.49 16 22 C -0.14 -1.69 8.09 31.18 0.25 -1.44 16 23 C -0.14 -2.22 7.54 31.12 0.23 -1.99 16 24 H 0.04 1.16 7.80 -2.39 -0.02 1.14 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.03 0.83 6.06 -2.39 -0.01 0.81 16 27 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.05 1.88 8.10 -2.38 -0.02 1.86 16 32 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 33 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 35 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 36 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 37 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.31 7.01 -2.39 -0.02 1.29 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.26 7.72 -2.38 -0.02 1.24 16 Total: -1.00 -69.72 351.75 6.43 -63.28 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.93 Total: 10.60 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 3.31 Total: -35.53 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.28 Total: -58.61 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.12 Total: -26.57 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -69.72 6.43 -63.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263530808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.786 kcal (2) G-P(sol) polarization free energy of solvation -69.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds