Wall clock time and date at job start Mon Mar 30 2020 01:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00174 * 2 1 4 4 C 1.53000 * 109.46929 * 270.00165 * 3 2 1 5 5 N 1.46502 * 109.46838 * 180.02562 * 4 3 2 6 6 C 1.36939 * 120.00050 * 179.97438 * 5 4 3 7 7 H 1.08003 * 119.99642 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00398 * 179.97438 * 6 5 4 9 9 N 1.31623 * 119.99667 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00282 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47165 * 89.99880 * 10 8 6 12 12 H 1.48505 * 109.46878 * 210.00099 * 10 8 6 13 13 H 1.48499 * 109.46988 * 329.99629 * 10 8 6 14 14 C 1.34777 * 119.99836 * 180.02562 * 2 1 3 15 15 O 1.21280 * 120.00186 * 179.97438 * 14 2 1 16 16 C 1.50701 * 119.99923 * 359.97438 * 14 2 1 17 17 H 1.09006 * 110.43652 * 57.46232 * 16 14 2 18 18 C 1.54887 * 110.48726 * 294.78220 * 16 14 2 19 19 C 1.54975 * 102.77628 * 203.40490 * 18 16 14 20 20 C 1.54261 * 104.15832 * 37.88686 * 19 18 16 21 21 C 1.53006 * 110.03063 * 217.13902 * 20 19 18 22 22 C 1.52998 * 110.03513 * 95.75442 * 20 19 18 23 23 C 1.53877 * 106.64292 * 336.44478 * 20 19 18 24 24 H 1.08998 * 109.47180 * 270.00393 * 1 2 3 25 25 H 1.09002 * 109.46727 * 29.99788 * 1 2 3 26 26 H 1.08998 * 109.47778 * 149.99840 * 1 2 3 27 27 H 1.08991 * 109.46953 * 30.00156 * 3 2 1 28 28 H 1.09002 * 109.46846 * 150.00636 * 3 2 1 29 29 H 1.09004 * 109.47074 * 299.99779 * 4 3 2 30 30 H 1.08997 * 109.47638 * 59.99959 * 4 3 2 31 31 H 0.96993 * 120.00342 * 359.97438 * 5 4 3 32 32 H 0.96997 * 120.00091 * 180.02562 * 9 8 6 33 33 H 1.09005 * 110.75389 * 321.68870 * 18 16 14 34 34 H 1.08998 * 110.75928 * 84.87840 * 18 16 14 35 35 H 1.08996 * 110.47209 * 279.23426 * 19 18 16 36 36 H 1.09001 * 110.53100 * 156.56626 * 19 18 16 37 37 H 1.09001 * 109.47002 * 297.90527 * 21 20 19 38 38 H 1.08993 * 109.46955 * 57.90964 * 21 20 19 39 39 H 1.09000 * 109.47050 * 177.90793 * 21 20 19 40 40 H 1.08998 * 109.47554 * 182.08642 * 22 20 19 41 41 H 1.09000 * 109.47092 * 302.09446 * 22 20 19 42 42 H 1.09001 * 109.46666 * 62.09117 * 22 20 19 43 43 H 1.08998 * 110.03190 * 119.26423 * 23 20 19 44 44 H 1.08998 * 110.03276 * 240.69218 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1856 2.9788 -1.4425 6 6 3.5285 3.5714 -2.6284 7 1 3.2581 3.1040 -3.5637 8 6 4.2226 4.7736 -2.6285 9 7 4.5508 5.3440 -1.4886 10 14 4.6897 5.5824 -4.2462 11 1 3.6011 6.4967 -4.6749 12 1 5.9449 6.3560 -4.0685 13 1 4.8948 4.5373 -5.2811 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1673 -0.0010 16 6 1.3853 -2.4723 -0.0005 17 1 0.7189 -2.5270 -0.8614 18 6 0.5881 -2.6379 1.3170 19 6 0.4101 -4.1741 1.4191 20 6 1.7467 -4.7440 0.9009 21 6 1.4947 -6.0188 0.0932 22 6 2.6793 -5.0442 2.0761 23 6 2.3668 -3.6625 -0.0011 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6085 2.0283 0.5138 28 1 3.1500 1.1383 0.5138 29 1 3.0416 0.9507 -1.9564 30 1 1.5001 1.8407 -1.9564 31 1 3.4281 3.3988 -0.6025 32 1 5.0355 6.1842 -1.4885 33 1 1.1593 -2.2587 2.1644 34 1 -0.3781 -2.1378 1.2495 35 1 -0.4155 -4.5049 0.7892 36 1 0.2443 -4.4717 2.4545 37 1 1.0446 -6.7741 0.7374 38 1 0.8201 -5.7976 -0.7337 39 1 2.4403 -6.3930 -0.2994 40 1 3.6335 -5.4112 1.6982 41 1 2.8426 -4.1334 2.6522 42 1 2.2260 -5.8020 2.7151 43 1 3.3317 -3.3509 0.3989 44 1 2.4882 -4.0458 -1.0142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266830372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:26 Heat of formation + Delta-G solvation = -43.876516 kcal Electronic energy + Delta-G solvation = -21000.969345 eV Core-core repulsion = 17952.770220 eV Total energy + Delta-G solvation = -3048.199125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.41276 -38.33717 -35.84270 -34.36647 -32.65419 -31.20533 -29.15506 -28.22040 -27.50833 -26.46546 -25.05567 -23.53459 -21.97661 -20.98178 -19.04642 -18.70872 -17.29866 -17.04811 -15.88053 -15.60837 -15.03158 -14.55701 -14.47204 -14.00193 -13.73279 -13.48759 -13.42071 -13.29010 -13.08642 -12.82910 -12.78790 -12.28211 -12.17729 -11.78562 -11.69776 -11.26251 -11.22930 -10.98545 -10.90542 -10.84679 -10.73581 -10.67929 -10.61775 -10.58170 -10.08397 -9.74062 -9.47681 -8.84291 -8.43817 -6.90019 -5.73247 -3.02341 2.81274 3.15224 3.46315 3.51245 3.53636 4.27018 4.28440 4.49783 4.64166 4.81149 4.99086 5.01266 5.06758 5.16518 5.29095 5.32333 5.38429 5.40428 5.45303 5.54888 5.58115 5.59025 5.64531 5.68687 5.73687 5.79700 5.87023 5.88509 5.91818 6.03951 6.07198 6.08949 6.16999 6.22242 6.32891 6.61724 6.78838 6.96313 7.58087 7.73075 8.38080 8.45660 9.56165 10.12732 10.47948 11.49781 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038065 B = 0.003330 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.402214 B = 8405.929557 C = 8626.134871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.107 3.893 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.515 3.485 15 O -0.533 6.533 16 C -0.111 4.111 17 H 0.097 0.903 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.071 4.071 21 C -0.139 4.139 22 C -0.138 4.138 23 C -0.105 4.105 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.087 0.913 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.317 -21.436 7.475 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.345 5.345 3 C -0.015 4.015 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.303 3.697 15 O -0.409 6.409 16 C -0.133 4.133 17 H 0.116 0.884 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.071 4.071 21 C -0.196 4.196 22 C -0.195 4.195 23 C -0.142 4.142 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.637 -21.399 7.300 25.429 hybrid contribution 0.232 0.769 -0.708 1.071 sum -11.405 -20.630 6.591 24.477 Atomic orbital electron populations 1.21870 0.79907 1.03247 1.01508 1.47790 1.06818 1.06333 1.73524 1.21694 0.97451 0.83327 0.99064 1.20902 0.95007 0.89353 0.93270 1.42217 1.67062 1.21676 1.06579 1.19215 1.29329 1.02346 0.85979 0.91221 1.24752 1.01288 0.98060 0.96942 1.69664 1.45125 1.19532 1.23945 0.86155 0.77663 0.79232 0.82961 1.21718 1.21712 1.20740 1.20538 0.88002 0.85208 0.75954 1.90709 1.13972 1.87071 1.49155 1.22123 0.98225 0.92873 1.00047 0.88449 1.22556 0.99766 0.96650 0.96187 1.22497 0.96795 0.94652 1.01141 1.21194 0.95216 0.95191 0.95513 1.21918 1.01531 0.96623 0.99519 1.21903 0.99001 1.01343 0.97287 1.22242 0.99372 0.92626 1.00008 0.92653 0.90744 0.91204 0.90593 0.89791 0.95996 0.96512 0.78273 0.93495 0.91065 0.90693 0.91311 0.91397 0.92852 0.92607 0.92648 0.92598 0.92481 0.92924 0.89489 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 8.98 59.85 0.54 1.32 16 2 N -0.61 -8.89 2.87 -181.58 -0.52 -9.41 16 3 C 0.11 1.92 5.52 -4.04 -0.02 1.89 16 4 C 0.14 3.14 6.58 -4.04 -0.03 3.11 16 5 N -0.73 -19.61 5.60 -59.90 -0.34 -19.95 16 6 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 7 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -29.03 13.06 55.49 0.72 -28.31 16 10 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 14 C 0.52 7.93 7.04 -10.98 -0.08 7.85 16 15 O -0.53 -10.60 15.00 5.56 0.08 -10.52 16 16 C -0.11 -1.21 2.31 -90.11 -0.21 -1.42 16 17 H 0.10 0.92 7.30 -51.93 -0.38 0.54 16 18 C -0.11 -0.98 5.58 -24.69 -0.14 -1.11 16 19 C -0.11 -0.84 5.91 -25.03 -0.15 -0.99 16 20 C -0.07 -0.60 0.94 -153.39 -0.14 -0.75 16 21 C -0.14 -1.02 8.16 37.16 0.30 -0.71 16 22 C -0.14 -1.17 8.14 37.16 0.30 -0.87 16 23 C -0.10 -1.15 5.49 -25.61 -0.14 -1.29 16 24 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 25 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 26 H 0.07 0.55 6.01 -51.93 -0.31 0.24 16 27 H 0.08 1.24 8.07 -51.93 -0.42 0.83 16 28 H 0.08 1.67 7.42 -51.93 -0.39 1.29 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.38 10.66 7.67 -40.82 -0.31 10.35 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 34 H 0.07 0.52 6.43 -51.93 -0.33 0.18 16 35 H 0.07 0.45 7.84 -51.93 -0.41 0.04 16 36 H 0.07 0.46 7.84 -51.93 -0.41 0.06 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.05 0.39 8.13 -51.93 -0.42 -0.03 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 1.18 6.38 -51.93 -0.33 0.85 16 44 H 0.07 0.72 7.67 -51.93 -0.40 0.32 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -33.97 345.24 -7.73 -41.70 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.85 Total: 3.88 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -0.01 Total: -0.62 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.13 Total: -57.67 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.97 -7.73 -41.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266830372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.180 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds