Wall clock time and date at job start Mon Mar 30 2020 01:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00174 * 2 1 4 4 C 1.53000 * 109.46929 * 270.00165 * 3 2 1 5 5 N 1.46502 * 109.46838 * 180.02562 * 4 3 2 6 6 C 1.36939 * 120.00050 * 179.97438 * 5 4 3 7 7 H 1.08003 * 119.99642 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00398 * 179.97438 * 6 5 4 9 9 N 1.31623 * 119.99667 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00282 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47165 * 89.99880 * 10 8 6 12 12 H 1.48505 * 109.46878 * 210.00099 * 10 8 6 13 13 H 1.48499 * 109.46988 * 329.99629 * 10 8 6 14 14 C 1.34777 * 119.99836 * 180.02562 * 2 1 3 15 15 O 1.21280 * 120.00186 * 179.97438 * 14 2 1 16 16 C 1.50701 * 119.99923 * 359.97438 * 14 2 1 17 17 H 1.09006 * 110.43652 * 57.46232 * 16 14 2 18 18 C 1.54887 * 110.48726 * 294.78220 * 16 14 2 19 19 C 1.54975 * 102.77628 * 203.40490 * 18 16 14 20 20 C 1.54261 * 104.15832 * 37.88686 * 19 18 16 21 21 C 1.53006 * 110.03063 * 217.13902 * 20 19 18 22 22 C 1.52998 * 110.03513 * 95.75442 * 20 19 18 23 23 C 1.53877 * 106.64292 * 336.44478 * 20 19 18 24 24 H 1.08998 * 109.47180 * 270.00393 * 1 2 3 25 25 H 1.09002 * 109.46727 * 29.99788 * 1 2 3 26 26 H 1.08998 * 109.47778 * 149.99840 * 1 2 3 27 27 H 1.08991 * 109.46953 * 30.00156 * 3 2 1 28 28 H 1.09002 * 109.46846 * 150.00636 * 3 2 1 29 29 H 1.09004 * 109.47074 * 299.99779 * 4 3 2 30 30 H 1.08997 * 109.47638 * 59.99959 * 4 3 2 31 31 H 0.96993 * 120.00342 * 359.97438 * 5 4 3 32 32 H 0.96997 * 120.00091 * 180.02562 * 9 8 6 33 33 H 1.09005 * 110.75389 * 321.68870 * 18 16 14 34 34 H 1.08998 * 110.75928 * 84.87840 * 18 16 14 35 35 H 1.08996 * 110.47209 * 279.23426 * 19 18 16 36 36 H 1.09001 * 110.53100 * 156.56626 * 19 18 16 37 37 H 1.09001 * 109.47002 * 297.90527 * 21 20 19 38 38 H 1.08993 * 109.46955 * 57.90964 * 21 20 19 39 39 H 1.09000 * 109.47050 * 177.90793 * 21 20 19 40 40 H 1.08998 * 109.47554 * 182.08642 * 22 20 19 41 41 H 1.09000 * 109.47092 * 302.09446 * 22 20 19 42 42 H 1.09001 * 109.46666 * 62.09117 * 22 20 19 43 43 H 1.08998 * 110.03190 * 119.26423 * 23 20 19 44 44 H 1.08998 * 110.03276 * 240.69218 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1856 2.9788 -1.4425 6 6 3.5285 3.5714 -2.6284 7 1 3.2581 3.1040 -3.5637 8 6 4.2226 4.7736 -2.6285 9 7 4.5508 5.3440 -1.4886 10 14 4.6897 5.5824 -4.2462 11 1 3.6011 6.4967 -4.6749 12 1 5.9449 6.3560 -4.0685 13 1 4.8948 4.5373 -5.2811 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1673 -0.0010 16 6 1.3853 -2.4723 -0.0005 17 1 0.7189 -2.5270 -0.8614 18 6 0.5881 -2.6379 1.3170 19 6 0.4101 -4.1741 1.4191 20 6 1.7467 -4.7440 0.9009 21 6 1.4947 -6.0188 0.0932 22 6 2.6793 -5.0442 2.0761 23 6 2.3668 -3.6625 -0.0011 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6085 2.0283 0.5138 28 1 3.1500 1.1383 0.5138 29 1 3.0416 0.9507 -1.9564 30 1 1.5001 1.8407 -1.9564 31 1 3.4281 3.3988 -0.6025 32 1 5.0355 6.1842 -1.4885 33 1 1.1593 -2.2587 2.1644 34 1 -0.3781 -2.1378 1.2495 35 1 -0.4155 -4.5049 0.7892 36 1 0.2443 -4.4717 2.4545 37 1 1.0446 -6.7741 0.7374 38 1 0.8201 -5.7976 -0.7337 39 1 2.4403 -6.3930 -0.2994 40 1 3.6335 -5.4112 1.6982 41 1 2.8426 -4.1334 2.6522 42 1 2.2260 -5.8020 2.7151 43 1 3.3317 -3.3509 0.3989 44 1 2.4882 -4.0458 -1.0142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266830372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:25 Heat of formation + Delta-G solvation = -65.742150 kcal Electronic energy + Delta-G solvation = -21001.917510 eV Core-core repulsion = 17952.770220 eV Total energy + Delta-G solvation = -3049.147290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.46844 -39.26322 -37.36984 -36.12359 -33.81720 -32.93677 -30.11754 -29.64988 -28.13440 -27.52917 -26.34836 -25.07848 -23.46035 -22.16582 -20.10477 -19.53454 -19.21784 -18.25541 -17.25907 -16.75859 -16.40135 -15.94590 -15.65278 -15.19061 -15.09791 -14.97783 -14.65670 -14.28625 -14.12680 -14.01720 -13.77222 -13.11740 -13.08728 -12.98885 -12.87768 -12.74991 -12.57087 -12.38885 -12.32927 -12.15568 -12.01845 -11.90141 -11.60894 -11.40723 -11.38602 -11.25788 -11.00846 -10.72753 -9.69130 -9.10164 -8.00511 -5.31870 1.44287 1.47503 1.55993 1.62613 1.98620 2.53886 3.32456 3.42690 3.53961 3.75211 3.96593 4.03925 4.17814 4.21410 4.28056 4.31014 4.35805 4.45524 4.52875 4.55170 4.63954 4.70306 4.73140 4.85042 4.90376 4.94541 4.97711 5.01675 5.06237 5.07824 5.15674 5.18465 5.22204 5.36066 5.40073 5.42487 5.49765 5.55489 5.60542 6.20916 6.43241 7.19219 7.26828 7.98013 8.23888 9.22953 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038065 B = 0.003330 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.402214 B = 8405.929557 C = 8626.134871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.610 5.610 3 C 0.121 3.879 4 C 0.150 3.850 5 N -0.744 5.744 6 C -0.254 4.254 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.980 3.020 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.272 1.272 14 C 0.506 3.494 15 O -0.591 6.591 16 C -0.104 4.104 17 H 0.122 0.878 18 C -0.109 4.109 19 C -0.106 4.106 20 C -0.069 4.069 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.108 4.108 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.055 0.945 29 H -0.004 1.004 30 H 0.031 0.969 31 H 0.375 0.625 32 H 0.254 0.746 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.087 -22.656 7.053 28.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.342 5.342 3 C -0.003 4.003 4 C 0.022 3.978 5 N -0.387 5.387 6 C -0.385 4.385 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.808 3.192 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.197 1.197 14 C 0.296 3.704 15 O -0.471 6.471 16 C -0.125 4.125 17 H 0.140 0.860 18 C -0.146 4.146 19 C -0.144 4.144 20 C -0.069 4.069 21 C -0.193 4.193 22 C -0.196 4.196 23 C -0.146 4.146 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.014 0.986 30 H 0.049 0.951 31 H 0.207 0.793 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.474 -22.653 6.875 27.747 hybrid contribution 1.104 1.111 -0.564 1.665 sum -13.369 -21.543 6.311 26.128 Atomic orbital electron populations 1.22231 0.76554 1.04755 1.03674 1.47900 1.08766 1.04743 1.72745 1.21314 0.97264 0.85589 0.96124 1.20939 0.94232 0.86711 0.95875 1.42406 1.67620 1.23043 1.05633 1.19599 1.29287 1.02721 0.86906 0.90928 1.25658 1.01510 0.98774 1.00623 1.69823 1.45952 1.19862 1.26183 0.85055 0.77191 0.78202 0.78774 1.20624 1.21857 1.19685 1.21469 0.87649 0.86754 0.74525 1.90684 1.16750 1.87956 1.51743 1.22194 0.98131 0.89657 1.02484 0.85981 1.22582 1.00173 0.98004 0.93875 1.22496 0.96333 0.93296 1.02225 1.21194 0.95758 0.94991 0.94990 1.21894 1.01504 0.96122 0.99796 1.21906 0.98988 1.01106 0.97567 1.22253 0.98193 0.93804 1.00375 0.90106 0.90603 0.88411 0.88668 0.92660 0.98583 0.95081 0.79264 0.93711 0.92752 0.87985 0.89292 0.90279 0.91445 0.91824 0.93391 0.93515 0.93946 0.91137 0.93030 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 8.98 127.77 1.15 2.31 16 2 N -0.61 -17.22 2.87 -846.77 -2.43 -19.65 16 3 C 0.12 4.39 5.52 86.38 0.48 4.87 16 4 C 0.15 6.69 6.58 86.38 0.57 7.26 16 5 N -0.74 -40.80 5.60 -343.44 -1.92 -42.73 16 6 C -0.25 -15.03 9.99 84.03 0.84 -14.19 16 7 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 8 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 9 N -0.97 -61.05 13.06 21.65 0.28 -60.77 16 10 Si 0.98 47.49 29.55 68.60 2.03 49.52 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 13 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 14 C 0.51 15.68 7.04 87.66 0.62 16.30 16 15 O -0.59 -24.96 15.00 -3.03 -0.05 -25.01 16 16 C -0.10 -2.10 2.31 -10.47 -0.02 -2.12 16 17 H 0.12 1.90 7.30 -2.38 -0.02 1.88 16 18 C -0.11 -1.55 5.58 31.91 0.18 -1.38 16 19 C -0.11 -1.21 5.91 31.70 0.19 -1.02 16 20 C -0.07 -1.07 0.94 -51.46 -0.05 -1.12 16 21 C -0.14 -1.68 8.16 71.98 0.59 -1.09 16 22 C -0.14 -2.28 8.14 71.98 0.59 -1.70 16 23 C -0.11 -2.38 5.49 31.32 0.17 -2.21 16 24 H 0.08 1.00 7.66 -2.39 -0.02 0.98 16 25 H 0.08 1.30 8.07 -2.39 -0.02 1.28 16 26 H 0.10 1.12 6.01 -2.39 -0.01 1.10 16 27 H 0.10 3.07 8.07 -2.39 -0.02 3.05 16 28 H 0.05 2.32 7.42 -2.39 -0.02 2.31 16 29 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.38 21.51 7.67 -92.71 -0.71 20.80 16 32 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.05 0.98 8.05 -2.38 -0.02 0.96 16 34 H 0.10 0.93 6.43 -2.39 -0.02 0.91 16 35 H 0.09 0.72 7.84 -2.39 -0.02 0.70 16 36 H 0.08 0.78 7.84 -2.39 -0.02 0.76 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 39 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.05 1.51 6.38 -2.39 -0.02 1.49 16 44 H 0.07 1.42 7.67 -2.39 -0.02 1.40 16 Total: -1.00 -76.32 345.24 3.91 -72.41 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.25 Total: 24.22 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 5.75 Total: 2.01 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -4.07 Total: -123.15 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.05 Total: -25.01 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -76.32 3.91 -72.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266830372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.670 kcal (2) G-P(sol) polarization free energy of solvation -76.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds