Wall clock time and date at job start Mon Mar 30 2020 01:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 120.00121 * 2 1 4 4 C 1.53004 * 109.46860 * 269.99685 * 3 2 1 5 5 N 1.46497 * 109.47143 * 180.02562 * 4 3 2 6 6 C 1.36930 * 120.00037 * 180.02562 * 5 4 3 7 7 H 1.08001 * 120.00388 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00115 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99886 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00085 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47166 * 59.99962 * 10 8 6 12 12 H 1.48502 * 109.47415 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47285 * 299.99838 * 10 8 6 14 14 C 1.34777 * 119.99802 * 179.97438 * 2 1 3 15 15 O 1.21283 * 119.99718 * 184.77715 * 14 2 1 16 16 C 1.50695 * 120.00107 * 4.78460 * 14 2 1 17 17 H 1.08997 * 110.43430 * 329.02296 * 16 14 2 18 18 C 1.54893 * 110.48743 * 91.56441 * 16 14 2 19 19 C 1.54894 * 102.74700 * 156.75315 * 18 16 14 20 20 C 1.54261 * 104.19451 * 322.05690 * 19 18 16 21 21 C 1.53008 * 110.03048 * 142.89758 * 20 19 18 22 22 C 1.53002 * 110.03209 * 264.27593 * 20 19 18 23 23 C 1.53870 * 106.64386 * 23.58794 * 20 19 18 24 24 H 1.08996 * 109.47036 * 264.66308 * 1 2 3 25 25 H 1.09010 * 109.46731 * 24.65883 * 1 2 3 26 26 H 1.08995 * 109.47049 * 144.65700 * 1 2 3 27 27 H 1.09004 * 109.46967 * 29.99532 * 3 2 1 28 28 H 1.08994 * 109.47078 * 149.99567 * 3 2 1 29 29 H 1.09003 * 109.46741 * 299.99953 * 4 3 2 30 30 H 1.09003 * 109.46804 * 60.00041 * 4 3 2 31 31 H 0.97004 * 119.99782 * 359.97438 * 5 4 3 32 32 H 0.96996 * 120.00112 * 179.97438 * 9 8 6 33 33 H 1.08995 * 110.75477 * 38.43879 * 18 16 14 34 34 H 1.08998 * 110.91391 * 275.13928 * 18 16 14 35 35 H 1.09001 * 110.48060 * 203.37710 * 19 18 16 36 36 H 1.08994 * 110.48243 * 80.73768 * 19 18 16 37 37 H 1.08997 * 109.47000 * 182.09264 * 21 20 19 38 38 H 1.08993 * 109.46991 * 62.09166 * 21 20 19 39 39 H 1.08999 * 109.47030 * 302.09005 * 21 20 19 40 40 H 1.09000 * 109.47453 * 297.90800 * 22 20 19 41 41 H 1.08996 * 109.47250 * 57.91155 * 22 20 19 42 42 H 1.09002 * 109.46631 * 177.90900 * 22 20 19 43 43 H 1.09000 * 110.03345 * 119.30661 * 23 20 19 44 44 H 1.09000 * 110.03566 * 240.73782 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 7 3.1856 2.9787 -1.4426 6 6 3.5277 3.5718 -2.6285 7 1 3.2574 3.1043 -3.5638 8 6 4.2218 4.7739 -2.6286 9 7 4.5508 5.3439 -1.4888 10 14 4.6890 5.5825 -4.2463 11 1 3.4597 5.8781 -5.0252 12 1 5.4196 6.8466 -3.9751 13 1 5.5597 4.6655 -5.0249 14 6 2.1388 -1.1672 0.0005 15 8 3.3485 -1.1690 0.0880 16 6 1.3893 -2.4700 -0.1077 17 1 0.4050 -2.3821 0.3521 18 6 1.2587 -2.8987 -1.5904 19 6 1.0506 -4.4301 -1.4864 20 6 1.9758 -4.8597 -0.3291 21 6 1.3106 -5.9680 0.4897 22 6 3.3151 -5.3499 -0.8831 23 6 2.1922 -3.6140 0.5478 24 1 -0.3633 -0.0956 1.0232 25 1 -0.3633 0.9341 -0.4288 26 1 -0.3633 -0.8382 -0.5944 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5139 29 1 3.0417 0.9506 -1.9563 30 1 1.5001 1.8406 -1.9564 31 1 3.4281 3.3988 -0.6026 32 1 5.0361 6.1837 -1.4888 33 1 2.1711 -2.6694 -2.1406 34 1 0.3970 -2.4228 -2.0586 35 1 1.3477 -4.9193 -2.4141 36 1 0.0116 -4.6586 -1.2492 37 1 1.9552 -6.2385 1.3260 38 1 1.1506 -6.8410 -0.1429 39 1 0.3523 -5.6138 0.8695 40 1 3.1499 -6.2246 -1.5122 41 1 3.7751 -4.5585 -1.4748 42 1 3.9745 -5.6159 -0.0569 43 1 1.8234 -3.7989 1.5567 44 1 3.2513 -3.3581 0.5780 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266830373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:29 Heat of formation + Delta-G solvation = -44.481495 kcal Electronic energy + Delta-G solvation = -21042.545867 eV Core-core repulsion = 17994.320509 eV Total energy + Delta-G solvation = -3048.225358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.36777 -38.34156 -35.82348 -34.32990 -32.59475 -31.25846 -29.21268 -28.16668 -27.47802 -26.46080 -25.05015 -23.56616 -21.92854 -20.99686 -18.96502 -18.67185 -17.38178 -17.05762 -15.91615 -15.32045 -15.13692 -14.67761 -14.37041 -13.97076 -13.74670 -13.43881 -13.37859 -13.25626 -13.10436 -12.84009 -12.81290 -12.28367 -12.20521 -11.77694 -11.66555 -11.29469 -11.17691 -10.96252 -10.88158 -10.85917 -10.71493 -10.67437 -10.60792 -10.53971 -10.12219 -9.74255 -9.48210 -8.84357 -8.43670 -6.90678 -5.73451 -3.02675 2.77795 3.15687 3.46766 3.50704 3.52264 4.30274 4.36054 4.50833 4.63939 4.82429 5.01853 5.05450 5.11094 5.21345 5.27082 5.34052 5.36349 5.41838 5.47646 5.54202 5.60890 5.64315 5.66674 5.68931 5.77118 5.79503 5.88712 5.90114 5.94705 6.06401 6.07376 6.12148 6.16934 6.23409 6.33027 6.61419 6.78342 6.95256 7.57950 7.72082 8.37915 8.45376 9.55813 10.12369 10.47591 11.49500 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030902 B = 0.003538 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.869408 B = 7912.681769 C = 8204.459873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.613 5.613 3 C 0.106 3.894 4 C 0.144 3.856 5 N -0.730 5.730 6 C -0.239 4.239 7 H 0.069 0.931 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.517 3.483 15 O -0.533 6.533 16 C -0.112 4.112 17 H 0.092 0.908 18 C -0.109 4.109 19 C -0.113 4.113 20 C -0.070 4.070 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.106 4.106 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.021 0.979 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.256 0.744 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.712 -21.633 4.525 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.346 5.346 3 C -0.017 4.017 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.305 3.695 15 O -0.409 6.409 16 C -0.134 4.134 17 H 0.110 0.890 18 C -0.147 4.147 19 C -0.150 4.150 20 C -0.070 4.070 21 C -0.195 4.195 22 C -0.196 4.196 23 C -0.144 4.144 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.217 0.783 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.040 -21.583 4.412 24.641 hybrid contribution 0.202 0.779 -0.612 1.011 sum -10.838 -20.804 3.800 23.764 Atomic orbital electron populations 1.21810 0.79876 1.03463 1.01379 1.47821 1.06832 1.06375 1.73606 1.21710 0.97585 0.83322 0.99051 1.20900 0.94996 0.89343 0.93229 1.42207 1.67072 1.21656 1.06577 1.19166 1.29514 1.02372 0.85958 0.91270 1.24749 1.01252 0.98039 0.96936 1.69650 1.44976 1.19622 1.24009 0.86234 0.78128 0.78648 0.82982 1.21259 1.21633 1.21225 1.20537 0.87977 0.85146 0.75878 1.90699 1.14211 1.87042 1.48962 1.22171 0.99851 0.92759 0.98606 0.88990 1.22422 1.02611 0.95781 0.93906 1.22484 0.99271 0.95100 0.98162 1.21166 0.95648 0.94991 0.95150 1.21917 1.00208 0.97874 0.99549 1.21911 0.96056 1.00851 1.00812 1.22299 1.02064 0.92070 0.97925 0.92785 0.90466 0.91341 0.90589 0.89696 0.96121 0.96488 0.78256 0.93428 0.90648 0.90991 0.91284 0.91363 0.92715 0.92798 0.92665 0.92920 0.92181 0.92682 0.91631 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.82 59.85 0.59 1.38 16 2 N -0.61 -9.00 2.87 -181.57 -0.52 -9.53 16 3 C 0.11 1.90 5.53 -4.04 -0.02 1.88 16 4 C 0.14 3.14 6.58 -4.04 -0.03 3.11 16 5 N -0.73 -19.55 5.60 -59.91 -0.34 -19.89 16 6 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 7 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.99 13.06 55.49 0.72 -28.27 16 10 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 C 0.52 8.00 6.81 -10.99 -0.07 7.92 16 15 O -0.53 -10.58 15.21 5.55 0.08 -10.49 16 16 C -0.11 -1.24 2.32 -90.06 -0.21 -1.45 16 17 H 0.09 0.81 6.65 -51.93 -0.35 0.47 16 18 C -0.11 -1.11 6.22 -24.73 -0.15 -1.27 16 19 C -0.11 -0.94 5.90 -25.07 -0.15 -1.08 16 20 C -0.07 -0.62 0.94 -153.39 -0.14 -0.76 16 21 C -0.14 -1.00 8.16 37.16 0.30 -0.70 16 22 C -0.14 -1.28 8.14 37.16 0.30 -0.98 16 23 C -0.11 -1.14 5.64 -25.56 -0.14 -1.28 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.78 8.03 -51.92 -0.42 0.36 16 26 H 0.07 0.56 6.21 -51.93 -0.32 0.23 16 27 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 28 H 0.08 1.70 7.36 -51.93 -0.38 1.32 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.38 10.65 7.67 -40.82 -0.31 10.34 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 34 H 0.07 0.64 7.77 -51.93 -0.40 0.24 16 35 H 0.07 0.55 7.84 -51.93 -0.41 0.14 16 36 H 0.07 0.48 7.84 -51.93 -0.41 0.08 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.05 0.37 8.13 -51.93 -0.42 -0.05 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 44 H 0.09 1.17 6.36 -51.93 -0.33 0.84 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -33.80 348.11 -7.72 -41.51 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.91 Total: 4.34 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 0.02 Total: -0.88 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.13 Total: -57.68 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.80 -7.72 -41.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266830373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.968 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds