Wall clock time and date at job start Mon Mar 30 2020 01:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 120.00121 * 2 1 4 4 C 1.53004 * 109.46860 * 269.99685 * 3 2 1 5 5 N 1.46497 * 109.47143 * 180.02562 * 4 3 2 6 6 C 1.36930 * 120.00037 * 180.02562 * 5 4 3 7 7 H 1.08001 * 120.00388 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00115 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99886 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00085 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47166 * 59.99962 * 10 8 6 12 12 H 1.48502 * 109.47415 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47285 * 299.99838 * 10 8 6 14 14 C 1.34777 * 119.99802 * 179.97438 * 2 1 3 15 15 O 1.21283 * 119.99718 * 184.77715 * 14 2 1 16 16 C 1.50695 * 120.00107 * 4.78460 * 14 2 1 17 17 H 1.08997 * 110.43430 * 329.02296 * 16 14 2 18 18 C 1.54893 * 110.48743 * 91.56441 * 16 14 2 19 19 C 1.54894 * 102.74700 * 156.75315 * 18 16 14 20 20 C 1.54261 * 104.19451 * 322.05690 * 19 18 16 21 21 C 1.53008 * 110.03048 * 142.89758 * 20 19 18 22 22 C 1.53002 * 110.03209 * 264.27593 * 20 19 18 23 23 C 1.53870 * 106.64386 * 23.58794 * 20 19 18 24 24 H 1.08996 * 109.47036 * 264.66308 * 1 2 3 25 25 H 1.09010 * 109.46731 * 24.65883 * 1 2 3 26 26 H 1.08995 * 109.47049 * 144.65700 * 1 2 3 27 27 H 1.09004 * 109.46967 * 29.99532 * 3 2 1 28 28 H 1.08994 * 109.47078 * 149.99567 * 3 2 1 29 29 H 1.09003 * 109.46741 * 299.99953 * 4 3 2 30 30 H 1.09003 * 109.46804 * 60.00041 * 4 3 2 31 31 H 0.97004 * 119.99782 * 359.97438 * 5 4 3 32 32 H 0.96996 * 120.00112 * 179.97438 * 9 8 6 33 33 H 1.08995 * 110.75477 * 38.43879 * 18 16 14 34 34 H 1.08998 * 110.91391 * 275.13928 * 18 16 14 35 35 H 1.09001 * 110.48060 * 203.37710 * 19 18 16 36 36 H 1.08994 * 110.48243 * 80.73768 * 19 18 16 37 37 H 1.08997 * 109.47000 * 182.09264 * 21 20 19 38 38 H 1.08993 * 109.46991 * 62.09166 * 21 20 19 39 39 H 1.08999 * 109.47030 * 302.09005 * 21 20 19 40 40 H 1.09000 * 109.47453 * 297.90800 * 22 20 19 41 41 H 1.08996 * 109.47250 * 57.91155 * 22 20 19 42 42 H 1.09002 * 109.46631 * 177.90900 * 22 20 19 43 43 H 1.09000 * 110.03345 * 119.30661 * 23 20 19 44 44 H 1.09000 * 110.03566 * 240.73782 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 7 3.1856 2.9787 -1.4426 6 6 3.5277 3.5718 -2.6285 7 1 3.2574 3.1043 -3.5638 8 6 4.2218 4.7739 -2.6286 9 7 4.5508 5.3439 -1.4888 10 14 4.6890 5.5825 -4.2463 11 1 3.4597 5.8781 -5.0252 12 1 5.4196 6.8466 -3.9751 13 1 5.5597 4.6655 -5.0249 14 6 2.1388 -1.1672 0.0005 15 8 3.3485 -1.1690 0.0880 16 6 1.3893 -2.4700 -0.1077 17 1 0.4050 -2.3821 0.3521 18 6 1.2587 -2.8987 -1.5904 19 6 1.0506 -4.4301 -1.4864 20 6 1.9758 -4.8597 -0.3291 21 6 1.3106 -5.9680 0.4897 22 6 3.3151 -5.3499 -0.8831 23 6 2.1922 -3.6140 0.5478 24 1 -0.3633 -0.0956 1.0232 25 1 -0.3633 0.9341 -0.4288 26 1 -0.3633 -0.8382 -0.5944 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5139 29 1 3.0417 0.9506 -1.9563 30 1 1.5001 1.8406 -1.9564 31 1 3.4281 3.3988 -0.6026 32 1 5.0361 6.1837 -1.4888 33 1 2.1711 -2.6694 -2.1406 34 1 0.3970 -2.4228 -2.0586 35 1 1.3477 -4.9193 -2.4141 36 1 0.0116 -4.6586 -1.2492 37 1 1.9552 -6.2385 1.3260 38 1 1.1506 -6.8410 -0.1429 39 1 0.3523 -5.6138 0.8695 40 1 3.1499 -6.2246 -1.5122 41 1 3.7751 -4.5585 -1.4748 42 1 3.9745 -5.6159 -0.0569 43 1 1.8234 -3.7989 1.5567 44 1 3.2513 -3.3581 0.5780 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266830373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:28 Heat of formation + Delta-G solvation = -66.110568 kcal Electronic energy + Delta-G solvation = -21043.483774 eV Core-core repulsion = 17994.320509 eV Total energy + Delta-G solvation = -3049.163265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.44687 -39.29177 -37.36021 -36.09742 -33.75472 -32.99642 -30.28831 -29.55590 -28.13143 -27.52695 -26.34075 -25.12407 -23.45564 -22.22604 -19.98239 -19.56880 -19.21505 -18.38997 -17.22713 -16.73332 -16.23282 -16.10093 -15.64711 -15.23647 -15.13983 -14.90414 -14.64501 -14.30577 -14.10702 -14.06567 -13.77120 -13.19101 -13.10016 -13.00179 -12.87605 -12.77992 -12.56827 -12.37595 -12.30601 -12.19030 -12.06169 -11.90031 -11.62929 -11.40151 -11.39390 -11.28867 -11.00158 -10.74847 -9.69604 -9.10439 -8.00304 -5.31799 1.44211 1.48854 1.54795 1.58382 1.98568 2.54049 3.32510 3.42641 3.58289 3.70354 3.96653 4.04051 4.18776 4.20539 4.29801 4.30443 4.34102 4.43943 4.51358 4.52628 4.61376 4.65141 4.72226 4.84916 4.90137 4.92421 4.97209 4.99428 5.04727 5.06488 5.12985 5.16976 5.21838 5.32472 5.39814 5.42505 5.47683 5.55209 5.61184 6.20829 6.42418 7.18405 7.26791 7.97995 8.23840 9.22976 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030902 B = 0.003538 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.869408 B = 7912.681769 C = 8204.459873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.612 5.612 3 C 0.119 3.881 4 C 0.151 3.849 5 N -0.743 5.743 6 C -0.255 4.255 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.980 3.020 11 H -0.272 1.272 12 H -0.291 1.291 13 H -0.280 1.280 14 C 0.508 3.492 15 O -0.590 6.590 16 C -0.103 4.103 17 H 0.128 0.872 18 C -0.110 4.110 19 C -0.105 4.105 20 C -0.068 4.068 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.108 4.108 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.055 0.945 29 H -0.004 1.004 30 H 0.032 0.968 31 H 0.375 0.625 32 H 0.254 0.746 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.050 0.950 43 H 0.079 0.921 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.500 -23.010 3.969 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C -0.004 4.004 4 C 0.024 3.976 5 N -0.387 5.387 6 C -0.387 4.387 7 H 0.091 0.909 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.198 1.198 12 H -0.217 1.217 13 H -0.206 1.206 14 C 0.298 3.702 15 O -0.470 6.470 16 C -0.124 4.124 17 H 0.146 0.854 18 C -0.148 4.148 19 C -0.142 4.142 20 C -0.069 4.069 21 C -0.191 4.191 22 C -0.197 4.197 23 C -0.146 4.146 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.014 0.986 30 H 0.050 0.950 31 H 0.207 0.793 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.893 -22.995 3.848 27.140 hybrid contribution 1.077 1.173 -0.421 1.647 sum -12.816 -21.822 3.427 25.538 Atomic orbital electron populations 1.22165 0.76506 1.04851 1.03682 1.47947 1.08800 1.04815 1.72855 1.21331 0.97361 0.85566 0.96190 1.20932 0.94249 0.86710 0.95756 1.42397 1.67638 1.23029 1.05629 1.19568 1.29443 1.02739 0.86913 0.90884 1.25658 1.01476 0.98759 1.00622 1.69813 1.45826 1.19928 1.26258 0.85130 0.78113 0.77292 0.78718 1.19751 1.21661 1.20631 1.21459 0.87631 0.86671 0.74483 1.90675 1.16956 1.87912 1.51451 1.22257 1.00646 0.89877 0.99640 0.85398 1.22444 1.01835 0.97675 0.92856 1.22484 1.00475 0.93214 0.98043 1.21176 0.95594 0.94707 0.95373 1.21881 1.00482 0.97415 0.99328 1.21919 0.96520 1.00630 1.00658 1.22313 0.99911 0.93048 0.99295 0.90221 0.90232 0.88647 0.88697 0.92611 0.98628 0.95023 0.79274 0.93698 0.93955 0.89047 0.90866 0.88779 0.92955 0.91713 0.91346 0.91322 0.94630 0.93059 0.90241 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 9.82 127.77 1.25 2.43 16 2 N -0.61 -17.47 2.87 -846.75 -2.43 -19.91 16 3 C 0.12 4.36 5.53 86.38 0.48 4.83 16 4 C 0.15 6.72 6.58 86.38 0.57 7.29 16 5 N -0.74 -40.74 5.60 -343.45 -1.92 -42.67 16 6 C -0.26 -15.09 9.99 84.04 0.84 -14.25 16 7 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 8 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 9 N -0.97 -61.05 13.06 21.65 0.28 -60.77 16 10 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 14 C 0.51 15.82 6.81 87.66 0.60 16.42 16 15 O -0.59 -24.90 15.21 -3.04 -0.05 -24.95 16 16 C -0.10 -2.11 2.32 -10.43 -0.02 -2.13 16 17 H 0.13 1.71 6.65 -2.39 -0.02 1.70 16 18 C -0.11 -2.06 6.22 31.89 0.20 -1.86 16 19 C -0.10 -1.45 5.90 31.67 0.19 -1.26 16 20 C -0.07 -1.10 0.94 -51.46 -0.05 -1.15 16 21 C -0.13 -1.54 8.16 71.98 0.59 -0.95 16 22 C -0.14 -2.57 8.14 71.98 0.59 -1.99 16 23 C -0.11 -2.25 5.64 31.35 0.18 -2.07 16 24 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 1.36 8.03 -2.38 -0.02 1.34 16 26 H 0.10 1.13 6.21 -2.39 -0.01 1.12 16 27 H 0.09 3.08 8.07 -2.38 -0.02 3.07 16 28 H 0.06 2.36 7.36 -2.39 -0.02 2.34 16 29 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.38 21.51 7.67 -92.71 -0.71 20.80 16 32 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.04 1.07 8.05 -2.39 -0.02 1.05 16 34 H 0.09 1.34 7.77 -2.39 -0.02 1.32 16 35 H 0.07 0.98 7.84 -2.39 -0.02 0.96 16 36 H 0.09 0.88 7.84 -2.39 -0.02 0.86 16 37 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.63 8.13 -2.39 -0.02 0.61 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 1.40 7.67 -2.39 -0.02 1.38 16 44 H 0.05 1.45 6.36 -2.39 -0.02 1.43 16 Total: -1.00 -76.18 348.11 4.02 -72.16 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.25 Total: 25.27 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 5.87 Total: 1.45 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -4.07 Total: -123.34 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.95 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -76.18 4.02 -72.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266830373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.053 kcal (2) G-P(sol) polarization free energy of solvation -76.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds