Wall clock time and date at job start Mon Mar 30 2020 01:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 120.00336 * 2 1 4 4 H 1.07993 * 119.99834 * 203.04612 * 3 2 1 5 5 C 1.38808 * 119.99826 * 23.04469 * 3 2 1 6 6 N 1.31621 * 120.00366 * 12.93004 * 5 3 2 7 7 Si 1.86796 * 119.99983 * 192.93213 * 5 3 2 8 8 H 1.48495 * 109.47752 * 89.99994 * 7 5 3 9 9 H 1.48504 * 109.47202 * 209.99925 * 7 5 3 10 10 H 1.48496 * 109.47195 * 329.99839 * 7 5 3 11 11 C 1.46501 * 119.99623 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47412 * 90.00074 * 11 2 1 13 13 N 1.46503 * 109.47033 * 179.97438 * 12 11 2 14 14 C 1.34781 * 119.99847 * 180.27288 * 13 12 11 15 15 O 1.21283 * 120.00098 * 359.72391 * 14 13 12 16 16 C 1.50697 * 119.99887 * 179.72198 * 14 13 12 17 17 C 1.53002 * 109.47103 * 180.02562 * 16 14 13 18 18 C 1.53002 * 110.01771 * 58.60838 * 17 16 14 19 19 C 1.54268 * 110.03095 * 297.16656 * 17 16 14 20 20 C 1.54890 * 104.19752 * 217.10329 * 19 17 16 21 21 C 1.54885 * 102.74557 * 37.94512 * 20 19 17 22 22 C 1.53873 * 110.03255 * 180.02562 * 17 16 14 23 23 H 1.08998 * 109.47416 * 275.12592 * 1 2 3 24 24 H 1.09002 * 109.46944 * 35.11997 * 1 2 3 25 25 H 1.09003 * 109.47531 * 155.12212 * 1 2 3 26 26 H 0.97000 * 120.00186 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.47087 * 329.99470 * 11 2 1 28 28 H 1.09007 * 109.46708 * 210.00230 * 11 2 1 29 29 H 1.08994 * 109.47620 * 59.99428 * 12 11 2 30 30 H 1.09001 * 109.46954 * 299.99569 * 12 11 2 31 31 H 0.96995 * 120.00353 * 359.97438 * 13 12 11 32 32 H 1.08996 * 109.47452 * 299.99924 * 16 14 13 33 33 H 1.08998 * 109.47051 * 60.00593 * 16 14 13 34 34 H 1.08999 * 109.46608 * 60.70252 * 18 17 16 35 35 H 1.08995 * 109.47348 * 180.70332 * 18 17 16 36 36 H 1.09002 * 109.46788 * 300.70269 * 18 17 16 37 37 H 1.08997 * 110.48942 * 335.78865 * 19 17 16 38 38 H 1.09003 * 110.48689 * 98.42472 * 19 17 16 39 39 H 1.08996 * 110.75616 * 279.62668 * 20 19 17 40 40 H 1.09005 * 110.75434 * 156.25835 * 20 19 17 41 41 H 1.09003 * 110.48397 * 203.37754 * 21 20 19 42 42 H 1.09001 * 110.60026 * 80.79059 * 21 20 19 43 43 H 1.08994 * 110.03040 * 238.56364 * 22 17 16 44 44 H 1.08993 * 110.03308 * 359.95432 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2231 -0.3661 5 6 1.5388 2.3400 0.4706 6 7 0.4119 2.2598 1.1458 7 14 2.3160 4.0072 0.1455 8 1 1.7990 4.5533 -1.1350 9 1 1.9760 4.9363 1.2530 10 1 3.7909 3.8576 0.0601 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 7 3.1854 -2.9784 -1.4437 14 6 3.5273 -3.5587 -2.6111 15 8 3.2237 -3.0333 -3.6613 16 6 4.2867 -4.8603 -2.6116 17 6 4.5470 -5.2983 -4.0543 18 6 5.3409 -4.2196 -4.7940 19 6 3.2093 -5.5602 -4.7766 20 6 3.5005 -6.7806 -5.6847 21 6 4.4288 -7.6503 -4.8011 22 6 5.3219 -6.6276 -4.0698 23 1 -0.3634 0.0918 1.0235 24 1 -0.3633 0.8406 -0.5912 25 1 -0.3634 -0.9323 -0.4323 26 1 -0.0152 3.0663 1.4743 27 1 1.6083 -2.0286 0.5130 28 1 3.1499 -1.1387 0.5134 29 1 3.0415 -0.9501 -1.9568 30 1 1.5000 -1.8400 -1.9571 31 1 3.4285 -3.3984 -0.6038 32 1 5.2375 -4.7265 -2.0957 33 1 3.7000 -5.6234 -2.1001 34 1 6.2995 -4.0693 -4.2973 35 1 5.5105 -4.5350 -5.8234 36 1 4.7782 -3.2861 -4.7880 37 1 2.4270 -5.7987 -4.0561 38 1 2.9249 -4.6965 -5.3778 39 1 4.0129 -6.4709 -6.5955 40 1 2.5801 -7.3148 -5.9207 41 1 5.0345 -8.3121 -5.4202 42 1 3.8452 -8.2281 -4.0844 43 1 6.2634 -6.5047 -4.6050 44 1 5.5132 -6.9603 -3.0497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267194969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:29 Heat of formation + Delta-G solvation = -37.610760 kcal Electronic energy + Delta-G solvation = -20857.126508 eV Core-core repulsion = 17809.199087 eV Total energy + Delta-G solvation = -3047.927421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.17345 -38.12927 -36.01387 -34.12205 -32.29103 -31.32328 -28.90369 -28.81140 -27.16865 -25.84626 -24.85048 -23.08003 -20.84438 -20.66172 -20.22042 -18.71475 -16.93398 -16.54972 -15.91226 -15.40016 -15.23420 -14.96091 -14.53303 -13.98797 -13.92534 -13.45798 -13.43558 -13.06449 -12.88736 -12.43947 -12.36483 -11.81348 -11.63149 -11.30450 -11.17157 -11.10487 -10.96337 -10.86657 -10.83833 -10.65375 -10.59528 -10.52917 -10.47517 -10.33204 -9.93866 -9.91907 -9.33400 -8.63570 -8.55479 -6.79636 -5.74180 -3.22448 2.90824 3.38740 3.44206 3.45835 3.50553 4.43175 4.46252 4.51178 4.61117 5.01772 5.07952 5.15071 5.32283 5.37371 5.40162 5.46441 5.52543 5.56922 5.63300 5.66457 5.74226 5.77209 5.83315 5.88128 5.92952 6.02305 6.10900 6.20391 6.26349 6.30910 6.36886 6.51300 6.65833 6.69756 6.79045 6.94023 7.36377 7.70790 7.79876 7.82272 8.37205 8.54643 9.21235 9.83668 10.31849 11.30622 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038619 B = 0.003266 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.856208 B = 8572.184048 C = 8832.002993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.259 4.259 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.727 5.727 14 C 0.506 3.494 15 O -0.536 6.536 16 C -0.132 4.132 17 C -0.046 4.046 18 C -0.152 4.152 19 C -0.107 4.107 20 C -0.127 4.127 21 C -0.124 4.124 22 C -0.118 4.118 23 H 0.033 0.967 24 H 0.042 0.958 25 H -0.001 1.001 26 H 0.253 0.747 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.395 0.605 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.074 -19.239 -8.037 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.321 5.321 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.015 3.985 12 C -0.031 4.031 13 N -0.378 5.378 14 C 0.293 3.707 15 O -0.414 6.414 16 C -0.172 4.172 17 C -0.046 4.046 18 C -0.209 4.209 19 C -0.145 4.145 20 C -0.165 4.165 21 C -0.162 4.162 22 C -0.155 4.155 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.228 0.772 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.716 -18.672 -8.685 21.991 hybrid contribution 0.472 0.761 0.358 0.964 sum 8.188 -17.911 -8.327 21.382 Atomic orbital electron populations 1.20834 0.82345 0.95575 0.99590 1.43785 1.01939 1.00342 1.86000 1.19202 0.98377 0.85547 1.35758 0.91336 1.25031 0.97857 0.98619 0.98000 1.70073 1.19413 1.27280 1.38379 0.86226 0.78787 0.83927 0.77428 1.21396 1.21712 1.20432 1.20840 0.96645 0.89109 0.91885 1.22368 0.95590 0.83257 1.01852 1.46160 1.58262 1.25284 1.08143 1.20626 0.79758 0.86444 0.83921 1.90610 1.54578 1.65218 1.30968 1.21883 1.01007 0.95528 0.98758 1.20889 0.95910 0.94767 0.93056 1.22168 0.99251 1.00489 0.98993 1.22431 0.95875 0.97886 0.98298 1.22531 0.99047 0.96635 0.98288 1.22336 0.97844 0.97426 0.98550 1.22299 0.98492 0.94258 1.00481 0.94880 0.93957 0.98292 0.93689 0.94182 0.93036 0.91729 0.92395 0.77166 0.89283 0.89237 0.93704 0.93254 0.89356 0.92229 0.90412 0.91726 0.91950 0.92088 0.91856 0.91657 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.98 59.85 0.54 4.54 16 2 N -0.60 -15.08 2.92 -181.12 -0.53 -15.61 16 3 C -0.26 -7.18 9.65 -15.06 -0.15 -7.32 16 4 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 5 C 0.00 0.10 5.10 -17.43 -0.09 0.01 16 6 N -0.91 -26.56 10.71 55.49 0.59 -25.96 16 7 Si 0.91 22.05 29.57 -169.99 -5.03 17.03 16 8 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.14 2.85 5.76 -4.04 -0.02 2.83 16 12 C 0.10 1.75 6.00 -4.04 -0.02 1.72 16 13 N -0.73 -10.30 5.56 -60.30 -0.33 -10.64 16 14 C 0.51 7.23 7.29 -10.98 -0.08 7.15 16 15 O -0.54 -9.56 12.16 5.55 0.07 -9.49 16 16 C -0.13 -1.34 4.40 -27.88 -0.12 -1.46 16 17 C -0.05 -0.48 0.63 -153.39 -0.10 -0.57 16 18 C -0.15 -1.78 7.83 37.16 0.29 -1.49 16 19 C -0.11 -1.21 4.74 -25.07 -0.12 -1.33 16 20 C -0.13 -1.16 6.91 -24.74 -0.17 -1.33 16 21 C -0.12 -0.99 6.83 -25.10 -0.17 -1.16 16 22 C -0.12 -0.99 6.11 -25.64 -0.16 -1.14 16 23 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 24 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 25 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 26 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 28 H 0.05 1.00 8.04 -51.92 -0.42 0.58 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.40 4.37 8.47 -40.82 -0.35 4.02 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.30 5.43 -51.93 -0.28 1.02 16 37 H 0.06 0.69 7.84 -51.93 -0.41 0.28 16 38 H 0.08 1.05 7.15 -51.93 -0.37 0.68 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.53 7.67 -51.93 -0.40 0.14 16 44 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 LS Contribution 343.09 15.07 5.17 5.17 Total: -1.00 -31.17 343.09 -8.42 -39.59 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.99 Total: -0.52 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -0.37 Total: 0.43 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.27 Total: -52.21 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.17 -8.42 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267194969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.978 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds