Wall clock time and date at job start Mon Mar 30 2020 01:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 120.00336 * 2 1 4 4 H 1.07993 * 119.99834 * 203.04612 * 3 2 1 5 5 C 1.38808 * 119.99826 * 23.04469 * 3 2 1 6 6 N 1.31621 * 120.00366 * 12.93004 * 5 3 2 7 7 Si 1.86796 * 119.99983 * 192.93213 * 5 3 2 8 8 H 1.48495 * 109.47752 * 89.99994 * 7 5 3 9 9 H 1.48504 * 109.47202 * 209.99925 * 7 5 3 10 10 H 1.48496 * 109.47195 * 329.99839 * 7 5 3 11 11 C 1.46501 * 119.99623 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47412 * 90.00074 * 11 2 1 13 13 N 1.46503 * 109.47033 * 179.97438 * 12 11 2 14 14 C 1.34781 * 119.99847 * 180.27288 * 13 12 11 15 15 O 1.21283 * 120.00098 * 359.72391 * 14 13 12 16 16 C 1.50697 * 119.99887 * 179.72198 * 14 13 12 17 17 C 1.53002 * 109.47103 * 180.02562 * 16 14 13 18 18 C 1.53002 * 110.01771 * 58.60838 * 17 16 14 19 19 C 1.54268 * 110.03095 * 297.16656 * 17 16 14 20 20 C 1.54890 * 104.19752 * 217.10329 * 19 17 16 21 21 C 1.54885 * 102.74557 * 37.94512 * 20 19 17 22 22 C 1.53873 * 110.03255 * 180.02562 * 17 16 14 23 23 H 1.08998 * 109.47416 * 275.12592 * 1 2 3 24 24 H 1.09002 * 109.46944 * 35.11997 * 1 2 3 25 25 H 1.09003 * 109.47531 * 155.12212 * 1 2 3 26 26 H 0.97000 * 120.00186 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.47087 * 329.99470 * 11 2 1 28 28 H 1.09007 * 109.46708 * 210.00230 * 11 2 1 29 29 H 1.08994 * 109.47620 * 59.99428 * 12 11 2 30 30 H 1.09001 * 109.46954 * 299.99569 * 12 11 2 31 31 H 0.96995 * 120.00353 * 359.97438 * 13 12 11 32 32 H 1.08996 * 109.47452 * 299.99924 * 16 14 13 33 33 H 1.08998 * 109.47051 * 60.00593 * 16 14 13 34 34 H 1.08999 * 109.46608 * 60.70252 * 18 17 16 35 35 H 1.08995 * 109.47348 * 180.70332 * 18 17 16 36 36 H 1.09002 * 109.46788 * 300.70269 * 18 17 16 37 37 H 1.08997 * 110.48942 * 335.78865 * 19 17 16 38 38 H 1.09003 * 110.48689 * 98.42472 * 19 17 16 39 39 H 1.08996 * 110.75616 * 279.62668 * 20 19 17 40 40 H 1.09005 * 110.75434 * 156.25835 * 20 19 17 41 41 H 1.09003 * 110.48397 * 203.37754 * 21 20 19 42 42 H 1.09001 * 110.60026 * 80.79059 * 21 20 19 43 43 H 1.08994 * 110.03040 * 238.56364 * 22 17 16 44 44 H 1.08993 * 110.03308 * 359.95432 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2231 -0.3661 5 6 1.5388 2.3400 0.4706 6 7 0.4119 2.2598 1.1458 7 14 2.3160 4.0072 0.1455 8 1 1.7990 4.5533 -1.1350 9 1 1.9760 4.9363 1.2530 10 1 3.7909 3.8576 0.0601 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 7 3.1854 -2.9784 -1.4437 14 6 3.5273 -3.5587 -2.6111 15 8 3.2237 -3.0333 -3.6613 16 6 4.2867 -4.8603 -2.6116 17 6 4.5470 -5.2983 -4.0543 18 6 5.3409 -4.2196 -4.7940 19 6 3.2093 -5.5602 -4.7766 20 6 3.5005 -6.7806 -5.6847 21 6 4.4288 -7.6503 -4.8011 22 6 5.3219 -6.6276 -4.0698 23 1 -0.3634 0.0918 1.0235 24 1 -0.3633 0.8406 -0.5912 25 1 -0.3634 -0.9323 -0.4323 26 1 -0.0152 3.0663 1.4743 27 1 1.6083 -2.0286 0.5130 28 1 3.1499 -1.1387 0.5134 29 1 3.0415 -0.9501 -1.9568 30 1 1.5000 -1.8400 -1.9571 31 1 3.4285 -3.3984 -0.6038 32 1 5.2375 -4.7265 -2.0957 33 1 3.7000 -5.6234 -2.1001 34 1 6.2995 -4.0693 -4.2973 35 1 5.5105 -4.5350 -5.8234 36 1 4.7782 -3.2861 -4.7880 37 1 2.4270 -5.7987 -4.0561 38 1 2.9249 -4.6965 -5.3778 39 1 4.0129 -6.4709 -6.5955 40 1 2.5801 -7.3148 -5.9207 41 1 5.0345 -8.3121 -5.4202 42 1 3.8452 -8.2281 -4.0844 43 1 6.2634 -6.5047 -4.6050 44 1 5.5132 -6.9603 -3.0497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267194969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:29 Heat of formation + Delta-G solvation = -56.586574 kcal Electronic energy + Delta-G solvation = -20857.949361 eV Core-core repulsion = 17809.199087 eV Total energy + Delta-G solvation = -3048.750274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20957 -39.12188 -37.77543 -35.63725 -33.38887 -32.99706 -30.30820 -29.54197 -28.41757 -27.89872 -25.81741 -24.69434 -22.38382 -21.60789 -21.40101 -19.58025 -18.78174 -17.84350 -17.17798 -16.65422 -16.59811 -16.09616 -15.77426 -15.48680 -15.15961 -14.89619 -14.48990 -14.43305 -14.16194 -14.04547 -13.56870 -13.06533 -12.83606 -12.77118 -12.67199 -12.49312 -12.42932 -12.18812 -12.05241 -11.97626 -11.86923 -11.80166 -11.62211 -11.45038 -11.33649 -11.23446 -10.70330 -10.48714 -9.94775 -8.84933 -7.86390 -5.36987 1.44794 1.47250 1.55232 1.78309 2.27177 2.53096 3.27494 3.62616 3.69799 3.78239 3.86212 4.10346 4.22759 4.32022 4.39741 4.42463 4.55254 4.59395 4.66229 4.67980 4.75696 4.80071 4.87446 4.89111 5.02483 5.05978 5.09039 5.13434 5.17898 5.23412 5.29385 5.31415 5.44713 5.47956 5.54910 5.56793 5.60533 5.67518 5.72504 6.29547 6.71461 7.11228 7.43239 7.81874 8.24721 9.16737 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038619 B = 0.003266 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.856208 B = 8572.184048 C = 8832.002993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.617 5.617 3 C -0.268 4.268 4 H 0.069 0.931 5 C -0.051 4.051 6 N -0.936 5.936 7 Si 0.968 3.032 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.268 1.268 11 C 0.147 3.853 12 C 0.118 3.882 13 N -0.718 5.718 14 C 0.501 3.499 15 O -0.576 6.576 16 C -0.123 4.123 17 C -0.048 4.048 18 C -0.149 4.149 19 C -0.110 4.110 20 C -0.126 4.126 21 C -0.120 4.120 22 C -0.112 4.112 23 H 0.012 0.988 24 H 0.012 0.988 25 H 0.030 0.970 26 H 0.250 0.750 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.414 0.586 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.791 -21.502 -7.662 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.341 5.341 3 C -0.398 4.398 4 H 0.087 0.913 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.796 3.204 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.192 1.192 11 C 0.020 3.980 12 C -0.009 4.009 13 N -0.371 5.371 14 C 0.289 3.711 15 O -0.456 6.456 16 C -0.162 4.162 17 C -0.048 4.048 18 C -0.207 4.207 19 C -0.147 4.147 20 C -0.164 4.164 21 C -0.157 4.157 22 C -0.149 4.149 23 H 0.030 0.970 24 H 0.031 0.969 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.251 0.749 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.470 -20.989 -8.300 24.477 hybrid contribution -0.064 1.413 0.178 1.426 sum 9.406 -19.576 -8.122 23.188 Atomic orbital electron populations 1.20588 0.82624 0.95904 0.97962 1.44031 1.02233 1.01622 1.86197 1.19502 0.98525 0.86865 1.34939 0.91290 1.25789 0.98601 1.01893 0.98313 1.70220 1.20712 1.27743 1.39576 0.85250 0.78499 0.79783 0.76820 1.21587 1.21757 1.19217 1.20954 0.96752 0.87515 0.92759 1.21752 0.94658 0.84506 1.00018 1.45968 1.57821 1.23850 1.09440 1.21471 0.79191 0.87458 0.82971 1.90624 1.55993 1.66507 1.32455 1.21942 1.01821 0.93295 0.99181 1.20932 0.95427 0.95607 0.92863 1.22102 0.99374 0.99420 0.99760 1.22389 0.96424 0.97559 0.98366 1.22524 0.99762 0.96011 0.98094 1.22336 0.97618 0.97249 0.98543 1.22260 0.98210 0.92647 1.01825 0.96977 0.96875 0.95124 0.94125 0.91758 0.92358 0.94778 0.94227 0.74931 0.86732 0.86587 0.92629 0.92979 0.92845 0.92666 0.93738 0.92005 0.91468 0.90838 0.90967 0.91235 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.74 8.98 127.77 1.15 9.88 16 2 N -0.62 -31.14 2.92 -726.94 -2.12 -33.27 16 3 C -0.27 -14.91 9.65 84.03 0.81 -14.10 16 4 H 0.07 3.74 7.86 -2.91 -0.02 3.72 16 5 C -0.05 -2.87 5.10 84.86 0.43 -2.44 16 6 N -0.94 -55.76 10.71 21.65 0.23 -55.52 16 7 Si 0.97 45.69 29.57 68.60 2.03 47.72 16 8 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 9 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 C 0.15 5.65 5.76 86.38 0.50 6.15 16 12 C 0.12 4.28 6.00 86.38 0.52 4.80 16 13 N -0.72 -19.15 5.56 -463.06 -2.57 -21.72 16 14 C 0.50 13.73 7.29 87.66 0.64 14.37 16 15 O -0.58 -20.95 12.16 -3.04 -0.04 -20.99 16 16 C -0.12 -2.14 4.40 29.85 0.13 -2.01 16 17 C -0.05 -0.90 0.63 -51.46 -0.03 -0.94 16 18 C -0.15 -3.39 7.83 71.98 0.56 -2.83 16 19 C -0.11 -2.41 4.74 31.67 0.15 -2.26 16 20 C -0.13 -2.12 6.91 31.88 0.22 -1.90 16 21 C -0.12 -1.53 6.83 31.65 0.22 -1.31 16 22 C -0.11 -1.48 6.11 31.30 0.19 -1.29 16 23 H 0.01 0.65 7.34 -2.39 -0.02 0.63 16 24 H 0.01 0.69 7.34 -2.39 -0.02 0.67 16 25 H 0.03 1.30 8.03 -2.39 -0.02 1.28 16 26 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.06 2.18 8.07 -2.39 -0.02 2.16 16 28 H 0.06 2.17 8.04 -2.38 -0.02 2.15 16 29 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.41 7.92 8.47 -92.71 -0.79 7.14 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.12 1.48 8.12 -2.39 -0.02 1.46 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.05 1.62 5.43 -2.39 -0.01 1.60 16 37 H 0.05 1.23 7.84 -2.39 -0.02 1.21 16 38 H 0.04 1.25 7.15 -2.39 -0.02 1.24 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.89 7.67 -2.39 -0.02 0.87 16 44 H 0.08 0.82 7.67 -2.39 -0.02 0.80 16 Total: -1.00 -69.16 343.09 3.18 -65.98 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.17 Total: 11.67 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.49 Total: 6.14 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -4.47 Total: -110.51 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.04 Total: -20.99 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -69.16 3.18 -65.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267194969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.389 kcal (2) G-P(sol) polarization free energy of solvation -69.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds