Wall clock time and date at job start Mon Mar 30 2020 01:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 120.00303 * 2 1 4 4 H 1.07999 * 119.99927 * 202.34179 * 3 2 1 5 5 C 1.38806 * 119.99656 * 22.34790 * 3 2 1 6 6 N 1.31624 * 120.00059 * 11.34304 * 5 3 2 7 7 Si 1.86800 * 119.99909 * 191.34258 * 5 3 2 8 8 H 1.48495 * 109.47379 * 90.00155 * 7 5 3 9 9 H 1.48511 * 109.47104 * 209.99823 * 7 5 3 10 10 H 1.48500 * 109.47066 * 329.99686 * 7 5 3 11 11 C 1.46506 * 119.99696 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47030 * 270.00043 * 11 2 1 13 13 N 1.46498 * 109.47123 * 180.02562 * 12 11 2 14 14 C 1.34774 * 120.00152 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00079 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.00115 * 180.02562 * 14 13 12 17 17 C 1.52998 * 109.47086 * 179.97438 * 16 14 13 18 18 C 1.53777 * 113.61692 * 274.13542 * 17 16 14 19 19 C 1.53955 * 87.02125 * 220.05131 * 18 17 16 20 20 C 1.53002 * 113.53632 * 270.81064 * 19 18 17 21 21 C 1.52997 * 113.74473 * 139.94178 * 19 18 17 22 22 C 1.53782 * 87.11338 * 25.35914 * 19 18 17 23 23 H 1.08996 * 109.46954 * 274.21202 * 1 2 3 24 24 H 1.09003 * 109.46575 * 34.21046 * 1 2 3 25 25 H 1.09001 * 109.47311 * 154.20447 * 1 2 3 26 26 H 0.97005 * 119.99993 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.46542 * 150.00334 * 11 2 1 28 28 H 1.09000 * 109.47187 * 30.00128 * 11 2 1 29 29 H 1.08993 * 109.47379 * 60.00197 * 12 11 2 30 30 H 1.09000 * 109.47205 * 300.00074 * 12 11 2 31 31 H 0.97001 * 119.99860 * 0.02562 * 13 12 11 32 32 H 1.09002 * 109.47334 * 59.99594 * 16 14 13 33 33 H 1.09000 * 109.46796 * 299.99696 * 16 14 13 34 34 H 1.08999 * 112.84895 * 45.33061 * 17 16 14 35 35 H 1.09003 * 113.61076 * 334.56456 * 18 17 16 36 36 H 1.08992 * 113.61832 * 105.46753 * 18 17 16 37 37 H 1.08996 * 109.47502 * 157.49365 * 20 19 18 38 38 H 1.09002 * 109.47068 * 277.49706 * 20 19 18 39 39 H 1.09003 * 109.47056 * 37.49256 * 20 19 18 40 40 H 1.09000 * 109.47087 * 322.39755 * 21 19 18 41 41 H 1.08994 * 109.47041 * 82.40276 * 21 19 18 42 42 H 1.09004 * 109.46939 * 202.39755 * 21 19 18 43 43 H 1.08990 * 113.61808 * 220.09478 * 22 19 18 44 44 H 1.09001 * 113.61549 * 89.18634 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1689 1.2209 -0.3555 5 6 1.5339 2.3429 0.4571 6 7 0.3842 2.2690 1.0936 7 14 2.3368 4.0047 0.1689 8 1 1.8681 4.5632 -1.1247 9 1 1.9682 4.9302 1.2702 10 1 3.8124 3.8418 0.1321 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4417 13 7 3.1854 -2.9796 1.4412 14 6 3.5219 -3.5639 2.6081 15 8 3.2184 -3.0394 3.6586 16 6 4.2764 -4.8685 2.6075 17 6 4.5313 -5.3109 4.0498 18 6 5.8024 -4.7025 4.6653 19 6 6.0525 -6.0785 5.3090 20 6 5.4004 -6.2375 6.6839 21 6 7.5210 -6.5076 5.2947 22 6 5.2240 -6.6793 4.1612 23 1 -0.3633 0.0755 1.0249 24 1 -0.3632 0.8499 -0.5778 25 1 -0.3634 -0.9253 -0.4472 26 1 -0.0464 3.0775 1.4127 27 1 3.1499 -1.1382 -0.5143 28 1 1.6083 -2.0282 -0.5148 29 1 1.5001 -1.8417 1.9555 30 1 3.0415 -0.9517 1.9559 31 1 3.4284 -3.3989 0.6009 32 1 5.2291 -4.7370 2.0944 33 1 3.6882 -5.6281 2.0927 34 1 3.6500 -5.2147 4.6840 35 1 6.5541 -4.4228 3.9272 36 1 5.6022 -3.9114 5.3878 37 1 5.2640 -7.2968 6.9011 38 1 6.0413 -5.7903 7.4438 39 1 4.4314 -5.7384 6.6863 40 1 7.9830 -6.1909 4.3596 41 1 8.0427 -6.0453 6.1326 42 1 7.5834 -7.5923 5.3817 43 1 4.5574 -7.4817 4.4772 44 1 5.8171 -6.9410 3.2849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317457044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:47 Heat of formation + Delta-G solvation = -14.726531 kcal Electronic energy + Delta-G solvation = -20450.843158 eV Core-core repulsion = 17403.908071 eV Total energy + Delta-G solvation = -3046.935086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.22375 -38.76920 -36.00446 -34.03711 -32.39340 -31.26709 -28.88268 -27.62401 -27.18693 -25.84325 -25.80637 -23.27506 -21.21549 -20.61602 -19.70642 -18.41876 -16.89685 -16.60564 -15.74419 -15.44349 -14.91363 -14.75091 -14.38652 -14.34242 -13.87360 -13.50118 -13.37568 -12.99541 -12.84001 -12.61216 -12.24582 -12.16482 -11.97076 -11.93528 -11.52879 -11.18678 -10.88317 -10.86642 -10.83325 -10.65910 -10.57610 -10.26290 -10.15186 -10.08697 -9.98130 -9.89119 -9.42935 -8.59137 -8.52359 -6.81398 -5.73558 -3.20957 3.00198 3.38448 3.44413 3.46591 3.57519 4.32637 4.46473 4.50782 4.54058 4.67966 4.98353 5.14321 5.20270 5.39381 5.41615 5.42293 5.48292 5.55033 5.61655 5.64548 5.67723 5.71511 5.78814 5.79931 5.86171 5.90401 6.02494 6.06721 6.10310 6.29461 6.34345 6.48488 6.71766 6.74881 6.79497 7.02984 7.37392 7.72586 7.80703 7.90608 8.37904 8.62251 9.21842 9.83907 10.32056 11.31510 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031137 B = 0.003123 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.035513 B = 8964.270668 C = 9308.840455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.729 5.729 14 C 0.504 3.496 15 O -0.542 6.542 16 C -0.132 4.132 17 C -0.091 4.091 18 C -0.124 4.124 19 C -0.092 4.092 20 C -0.129 4.129 21 C -0.134 4.134 22 C -0.129 4.129 23 H 0.029 0.971 24 H 0.047 0.953 25 H -0.003 1.003 26 H 0.253 0.747 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.394 0.606 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.290 -19.312 3.775 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.320 5.320 3 C -0.389 4.389 4 H 0.088 0.912 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.031 4.031 13 N -0.380 5.380 14 C 0.290 3.710 15 O -0.419 6.419 16 C -0.172 4.172 17 C -0.110 4.110 18 C -0.161 4.161 19 C -0.092 4.092 20 C -0.186 4.186 21 C -0.192 4.192 22 C -0.166 4.166 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.016 0.984 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.227 0.773 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.924 -18.742 4.588 21.697 hybrid contribution 0.447 0.824 -0.436 1.034 sum 10.371 -17.918 4.152 21.115 Atomic orbital electron populations 1.20846 0.82176 0.95717 0.99474 1.43929 1.02068 1.00381 1.85619 1.19229 0.98133 0.85244 1.36322 0.91216 1.25073 0.97684 0.98703 0.98117 1.70074 1.17800 1.27210 1.39985 0.86207 0.78835 0.83879 0.77319 1.21438 1.21663 1.20446 1.20987 0.96266 0.88865 0.92283 1.22466 0.95694 0.83047 1.01907 1.46240 1.58459 1.25339 1.07977 1.20677 0.79729 0.86569 0.84055 1.90696 1.54666 1.65219 1.31328 1.21699 1.01120 0.95443 0.98930 1.22252 0.98444 0.95475 0.94838 1.23135 0.97042 0.96085 0.99867 1.21802 0.95161 0.97247 0.94960 1.21599 1.00699 1.01431 0.94884 1.21721 0.94942 1.00832 1.01663 1.23132 0.98600 0.96565 0.98309 0.95233 0.93431 0.98410 0.93633 0.93403 0.94056 0.92367 0.91499 0.77335 0.89225 0.89171 0.88345 0.90407 0.91172 0.92635 0.92524 0.92103 0.92636 0.92767 0.92806 0.91571 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 9.01 59.85 0.54 4.59 16 2 N -0.60 -15.12 2.93 -181.12 -0.53 -15.65 16 3 C -0.26 -7.19 9.67 -15.06 -0.15 -7.33 16 4 H 0.07 1.88 7.84 -52.49 -0.41 1.46 16 5 C 0.00 0.08 5.13 -17.43 -0.09 -0.01 16 6 N -0.91 -26.80 10.58 55.49 0.59 -26.21 16 7 Si 0.91 22.09 29.57 -169.99 -5.03 17.07 16 8 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.14 2.89 5.82 -4.04 -0.02 2.86 16 12 C 0.09 1.88 6.00 -4.04 -0.02 1.86 16 13 N -0.73 -11.06 5.56 -60.30 -0.33 -11.39 16 14 C 0.50 7.88 7.83 -10.98 -0.09 7.79 16 15 O -0.54 -11.01 15.79 5.56 0.09 -10.93 16 16 C -0.13 -1.40 5.52 -27.88 -0.15 -1.55 16 17 C -0.09 -1.00 2.76 -89.81 -0.25 -1.25 16 18 C -0.12 -1.36 6.76 -25.83 -0.17 -1.53 16 19 C -0.09 -0.82 1.39 -153.60 -0.21 -1.04 16 20 C -0.13 -1.13 9.07 37.16 0.34 -0.79 16 21 C -0.13 -1.04 9.20 37.16 0.34 -0.70 16 22 C -0.13 -1.10 6.79 -25.92 -0.18 -1.27 16 23 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 24 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 25 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 26 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 28 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.39 4.52 8.47 -40.82 -0.35 4.18 16 32 H 0.09 0.79 7.87 -51.93 -0.41 0.39 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 1.27 7.25 -51.93 -0.38 0.89 16 35 H 0.08 0.80 7.75 -51.93 -0.40 0.40 16 36 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.59 7.34 -51.93 -0.38 0.21 16 40 H 0.05 0.41 7.96 -51.93 -0.41 0.00 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 44 H 0.08 0.60 8.06 -51.93 -0.42 0.19 16 LS Contribution 353.09 15.07 5.32 5.32 Total: -1.00 -32.35 353.09 -8.10 -40.45 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.08 Total: -0.29 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.12 Total: 1.63 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.28 Total: -53.26 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.35 -8.10 -40.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317457044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.723 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds